Wall clock time and date at job start Tue Mar 31 2020 06:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00255 * 2 1 4 4 C 1.50701 * 109.47066 * 66.04153 * 3 2 1 5 5 H 1.07992 * 120.00385 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99478 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00324 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99461 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47177 * 60.00462 * 8 6 4 10 10 H 1.48504 * 109.46888 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47400 * 299.99967 * 8 6 4 12 12 C 1.46893 * 111.00485 * 236.04038 * 2 1 3 13 13 C 1.50701 * 109.47438 * 293.95822 * 12 2 1 14 14 C 1.38346 * 119.93647 * 89.99172 * 13 12 2 15 15 C 1.38311 * 120.24706 * 180.02562 * 14 13 12 16 16 C 1.38038 * 120.11960 * 0.02866 * 15 14 13 17 17 C 1.39331 * 119.87525 * 359.97438 * 16 15 14 18 18 C 1.48350 * 120.11920 * 180.02562 * 17 16 15 19 19 C 1.39338 * 119.72639 * 4.99843 * 18 17 16 20 20 C 1.38403 * 119.06401 * 179.97438 * 19 18 17 21 21 C 1.38786 * 118.51385 * 0.02562 * 20 19 18 22 22 C 1.38244 * 119.36302 * 0.27707 * 21 20 19 23 23 N 1.31763 * 120.89586 * 359.41825 * 22 21 20 24 24 C 1.37993 * 119.93871 * 270.27855 * 13 12 2 25 25 H 1.08991 * 109.47268 * 183.95740 * 1 2 3 26 26 H 1.09005 * 109.46881 * 303.95912 * 1 2 3 27 27 H 1.09004 * 109.46399 * 63.95535 * 1 2 3 28 28 H 1.09000 * 109.47214 * 186.03979 * 3 2 1 29 29 H 1.09000 * 109.46581 * 306.04364 * 3 2 1 30 30 H 0.96996 * 119.99621 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.47582 * 173.95298 * 12 2 1 32 32 H 1.09006 * 109.47150 * 53.95533 * 12 2 1 33 33 H 1.07995 * 119.87948 * 359.97438 * 14 13 12 34 34 H 1.08003 * 119.93729 * 180.02562 * 15 14 13 35 35 H 1.07995 * 120.05471 * 179.97438 * 16 15 14 36 36 H 1.07997 * 120.46766 * 359.95873 * 19 18 17 37 37 H 1.08001 * 120.74366 * 180.02562 * 20 19 18 38 38 H 1.08002 * 120.31398 * 179.97438 * 21 20 19 39 39 H 1.08008 * 119.55009 * 179.70404 * 22 21 20 40 40 H 1.08002 * 120.06135 * 0.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5114 2.0487 6 6 2.0269 3.3496 1.5283 7 7 2.7112 4.0022 0.6144 8 14 1.5817 4.1874 3.1375 9 1 2.1734 3.4306 4.2699 10 1 2.1130 5.5742 3.1370 11 1 0.1045 4.2239 3.2846 12 6 1.9955 -0.7660 -1.1374 13 6 1.6370 -2.2205 -0.9727 14 6 0.4499 -2.7023 -1.4947 15 6 0.1142 -4.0359 -1.3468 16 6 0.9629 -4.8936 -0.6762 17 6 2.1597 -4.4136 -0.1484 18 6 3.0760 -5.3307 0.5728 19 6 2.7866 -6.6925 0.6301 20 6 3.6512 -7.5357 1.3061 21 6 4.7779 -6.9887 1.9039 22 6 5.0001 -5.6272 1.8130 23 7 4.1638 -4.8475 1.1582 24 6 2.4906 -3.0678 -0.2963 25 1 -0.3633 -1.0251 0.0709 26 1 -0.3633 0.5741 0.8524 27 1 -0.3632 0.4513 -0.9234 28 1 3.0798 1.3444 -0.1081 29 1 1.5612 1.9273 -0.8310 30 1 2.9852 4.9185 0.7761 31 1 3.0798 -0.6611 -1.1755 32 1 1.5612 -0.3874 -2.0627 33 1 -0.2176 -2.0346 -2.0190 34 1 -0.8136 -4.4068 -1.7568 35 1 0.6995 -5.9346 -0.5610 36 1 1.9000 -7.0844 0.1539 37 1 3.4534 -8.5957 1.3671 38 1 5.4718 -7.6198 2.4392 39 1 5.8734 -5.1976 2.2812 40 1 3.4147 -2.6895 0.1152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157802556.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:50 Heat of formation + Delta-G solvation = 64.616440 kcal Electronic energy + Delta-G solvation = -20658.714972 eV Core-core repulsion = 17631.158661 eV Total energy + Delta-G solvation = -3027.556311 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 282.143 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.41475 -38.94304 -36.32588 -33.10684 -32.74353 -32.28833 -31.06326 -29.38162 -27.14584 -26.59288 -24.20265 -24.07914 -23.30091 -21.55455 -20.88949 -19.94986 -17.42171 -16.42802 -16.30354 -16.00820 -15.80154 -14.93704 -14.83177 -14.33595 -14.24585 -14.08267 -13.64898 -13.57106 -13.28738 -13.14786 -12.41095 -12.32243 -11.91039 -11.87629 -11.44142 -11.19734 -11.04089 -10.88301 -10.72525 -10.57835 -10.39452 -10.10599 -9.81974 -9.69041 -9.50980 -9.20226 -8.57418 -8.39205 -8.16837 -7.19280 -5.99036 -4.00053 0.54329 1.12848 1.59609 1.83422 3.36671 3.40150 3.43777 3.61051 4.06345 4.14977 4.46919 4.50479 4.68496 4.85907 4.94469 5.02102 5.05562 5.26024 5.27788 5.35089 5.38769 5.51769 5.62191 5.66337 5.85719 5.88017 6.00637 6.04858 6.21039 6.27616 6.31315 6.39569 6.46520 6.60850 6.68029 6.79346 6.93270 7.14349 7.32430 7.37071 7.83535 7.90815 8.11948 8.23785 8.58287 9.07308 9.63789 11.11881 Molecular weight = 282.14amu Principal moments of inertia in cm(-1) A = 0.018472 B = 0.003665 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.411676 B = 7637.275448 C = 8633.935788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.534 5.534 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.089 3.911 13 C -0.067 4.067 14 C -0.100 4.100 15 C -0.128 4.128 16 C -0.108 4.108 17 C -0.063 4.063 18 C 0.180 3.820 19 C -0.169 4.169 20 C -0.074 4.074 21 C -0.185 4.185 22 C 0.107 3.893 23 N -0.475 5.475 24 C -0.054 4.054 25 H 0.048 0.952 26 H 0.073 0.927 27 H 0.010 0.990 28 H 0.031 0.969 29 H -0.009 1.009 30 H 0.261 0.739 31 H 0.078 0.922 32 H 0.032 0.968 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.157 0.843 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.486 -22.985 -2.617 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.258 5.258 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.039 4.039 13 C -0.067 4.067 14 C -0.119 4.119 15 C -0.146 4.146 16 C -0.127 4.127 17 C -0.063 4.063 18 C 0.044 3.956 19 C -0.189 4.189 20 C -0.100 4.100 21 C -0.204 4.204 22 C -0.051 4.051 23 N -0.183 5.183 24 C -0.073 4.073 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.028 0.972 28 H 0.049 0.951 29 H 0.009 0.991 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.175 0.825 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.044 -22.117 -2.260 22.232 hybrid contribution -0.620 -0.010 0.234 0.663 sum -0.664 -22.127 -2.027 22.230 Atomic orbital electron populations 1.22279 0.88955 0.99728 1.00373 1.62132 1.07023 1.17606 1.39054 1.19754 0.95446 0.81340 0.96662 1.21127 1.34807 0.96858 1.01684 0.91904 1.24984 0.95322 0.97329 0.96974 1.69949 1.38447 1.11463 1.34089 0.86558 0.78671 0.78297 0.83867 1.20138 1.21372 1.20311 1.21061 1.00621 0.88999 0.93243 1.19988 0.94100 0.96052 0.96569 1.21224 0.96182 0.95338 0.99133 1.20937 0.99593 0.93611 1.00450 1.21052 0.93651 0.99481 0.98512 1.18447 0.94211 0.93222 1.00465 1.19872 0.91455 0.90797 0.93446 1.22088 1.01253 0.93964 1.01614 1.21506 0.93529 1.00161 0.94811 1.22166 0.99068 0.96973 1.02239 1.22792 0.97460 0.90342 0.94473 1.67705 1.03034 1.39687 1.07889 1.21212 0.99864 0.91308 0.94948 0.93356 0.90796 0.97195 0.95132 0.99099 0.92897 0.90369 0.94954 0.86179 0.86022 0.86173 0.84635 0.84882 0.84889 0.82527 0.84591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 8.95 60.06 0.54 1.25 16 2 N -0.53 -11.97 4.74 -245.82 -1.17 -13.13 16 3 C 0.19 5.14 4.72 -4.97 -0.02 5.12 16 4 C -0.51 -14.54 8.46 -34.44 -0.29 -14.83 16 5 H 0.06 1.79 7.12 -52.49 -0.37 1.42 16 6 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 8 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 C 0.09 1.67 5.11 -4.98 -0.03 1.64 16 13 C -0.07 -1.09 4.88 -104.67 -0.51 -1.60 16 14 C -0.10 -1.41 7.96 -39.51 -0.31 -1.72 16 15 C -0.13 -1.54 10.03 -39.63 -0.40 -1.94 16 16 C -0.11 -1.30 9.41 -39.25 -0.37 -1.67 16 17 C -0.06 -0.90 5.87 -104.91 -0.62 -1.52 16 18 C 0.18 2.46 6.72 -82.94 -0.56 1.90 16 19 C -0.17 -1.77 9.46 -39.11 -0.37 -2.14 16 20 C -0.07 -0.65 10.17 -39.32 -0.40 -1.05 16 21 C -0.18 -1.63 10.11 -39.38 -0.40 -2.03 16 22 C 0.11 1.20 11.17 -17.58 -0.20 1.00 16 23 N -0.47 -6.87 9.44 -9.78 -0.09 -6.96 16 24 C -0.05 -0.89 9.22 -39.25 -0.36 -1.25 16 25 H 0.05 0.86 6.16 -51.93 -0.32 0.54 16 26 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 27 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.03 0.86 7.93 -51.93 -0.41 0.45 16 29 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 31 H 0.08 1.47 7.87 -51.93 -0.41 1.06 16 32 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 33 H 0.12 1.56 8.03 -52.49 -0.42 1.14 16 34 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 35 H 0.12 1.09 6.21 -52.49 -0.33 0.77 16 36 H 0.14 1.09 6.22 -52.49 -0.33 0.76 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.16 1.36 8.06 -52.48 -0.42 0.93 16 40 H 0.14 2.39 7.55 -52.49 -0.40 2.00 16 LS Contribution 334.77 15.07 5.04 5.04 Total: -1.00 -32.49 334.77 -10.32 -42.80 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -5.43 Total: -1.03 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -4.39 Total: -17.35 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -0.52 Total: -46.47 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.49 -10.32 -42.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157802556.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.418 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds