Wall clock time and date at job start Tue Mar 31 2020 05:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47067 * 2 1 4 4 C 1.52998 * 109.47012 * 119.99859 * 2 1 3 5 5 O 1.42904 * 109.47133 * 65.00133 * 4 2 1 6 6 N 1.41598 * 113.99949 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99627 * 179.97438 * 6 5 4 8 8 O 1.21589 * 120.00349 * 359.97438 * 7 6 5 9 9 N 1.34787 * 119.99663 * 179.97438 * 7 6 5 10 10 C 1.40196 * 119.99563 * 179.97438 * 9 7 6 11 11 C 1.40395 * 125.97533 * 359.97438 * 10 9 7 12 12 C 1.35243 * 107.86535 * 179.71691 * 11 10 9 13 13 N 1.34960 * 107.86064 * 0.42509 * 12 11 10 14 14 C 1.46500 * 125.97985 * 179.83521 * 13 12 11 15 15 C 1.50706 * 109.47299 * 124.71356 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 N 1.31213 * 125.96849 * 179.97438 * 10 9 7 24 24 H 1.09001 * 109.47277 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46723 * 299.99992 * 1 2 3 26 26 H 1.09001 * 109.46521 * 59.99869 * 1 2 3 27 27 H 1.09001 * 109.46723 * 240.00008 * 2 1 3 28 28 H 1.09005 * 109.46599 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46668 * 299.99676 * 3 2 1 30 30 H 1.08991 * 109.47244 * 60.00277 * 3 2 1 31 31 H 1.08996 * 109.47369 * 305.00205 * 4 2 1 32 32 H 1.09001 * 109.47494 * 184.99672 * 4 2 1 33 33 H 0.96998 * 120.00271 * 359.97438 * 6 5 4 34 34 H 0.96998 * 119.99666 * 359.97438 * 9 7 6 35 35 H 1.08003 * 126.06887 * 0.02562 * 11 10 9 36 36 H 1.08007 * 126.06985 * 180.26350 * 12 11 10 37 37 H 1.09004 * 109.47078 * 4.72118 * 14 13 12 38 38 H 1.08993 * 109.47364 * 244.71890 * 14 13 12 39 39 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6620 -2.0982 1.1920 6 7 2.0874 -2.8590 2.3078 7 6 1.7953 -4.1729 2.3784 8 8 1.1660 -4.7047 1.4842 9 7 2.2007 -4.8973 3.4403 10 6 1.8964 -6.2638 3.5139 11 6 1.1799 -7.0019 2.5583 12 6 1.1051 -8.2805 2.9924 13 7 1.7399 -8.3519 4.1812 14 6 1.8933 -9.5541 5.0042 15 6 3.3552 -9.7855 5.2881 16 1 4.0959 -9.1048 4.8951 17 6 3.7471 -10.8661 6.0495 18 7 2.8447 -11.6920 6.5325 19 14 5.5590 -11.1525 6.4019 20 1 5.7141 -12.3678 7.2411 21 1 6.2889 -11.3382 5.1220 22 1 6.1145 -9.9790 7.1227 23 7 2.2314 -7.0766 4.4880 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6768 1.9563 0.8899 31 1 1.6054 -0.2617 2.1369 32 1 3.1263 -0.6444 1.2952 33 1 2.5891 -2.4347 3.0214 34 1 2.7031 -4.4731 4.1534 35 1 0.7665 -6.6178 1.6374 36 1 0.6209 -9.0987 2.4800 37 1 1.4863 -10.4136 4.4714 38 1 1.3572 -9.4220 5.9440 39 1 1.9038 -11.5432 6.3497 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160418043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:15 Heat of formation + Delta-G solvation = 52.788598 kcal Electronic energy + Delta-G solvation = -21175.296803 eV Core-core repulsion = 17736.378335 eV Total energy + Delta-G solvation = -3438.918468 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.75498 -39.56098 -38.14332 -35.53510 -34.75458 -33.71403 -32.07681 -30.44573 -29.34501 -27.58733 -26.53029 -26.05450 -23.24275 -22.11005 -20.98408 -20.52879 -19.89709 -18.46106 -17.92114 -17.16774 -16.42584 -16.37914 -15.56788 -15.14764 -14.93349 -14.39582 -14.31130 -13.98318 -13.77259 -13.48959 -13.16191 -12.94354 -12.60698 -12.44088 -12.27042 -11.86540 -11.76498 -11.57000 -11.24437 -11.16447 -11.05818 -10.80618 -10.47544 -10.15948 -10.14614 -9.74683 -9.14383 -8.96834 -8.57146 -8.18902 -7.48610 -6.56926 -4.30888 1.29454 2.58297 3.04477 3.16451 3.38506 3.40003 3.59156 3.75960 3.95325 4.24456 4.31532 4.36871 4.42041 4.67110 4.92719 4.99059 5.11678 5.16671 5.22812 5.40663 5.40966 5.48530 5.62163 5.70477 5.81042 5.94089 6.09181 6.34493 6.45797 6.51392 6.63899 6.79887 6.95771 7.38690 7.62293 7.83695 7.85874 8.35654 8.54404 8.55740 8.63491 9.37231 10.80567 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.039766 B = 0.002620 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.943966 B =10682.994007 C =11186.247044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 C -0.145 4.145 4 C 0.033 3.967 5 O -0.121 6.121 6 N -0.614 5.614 7 C 0.731 3.269 8 O -0.548 6.548 9 N -0.635 5.635 10 C 0.280 3.720 11 C -0.283 4.283 12 C 0.052 3.948 13 N -0.318 5.318 14 C 0.249 3.751 15 C -0.607 4.607 16 H 0.063 0.937 17 C 0.022 3.978 18 N -0.905 5.905 19 Si 1.077 2.923 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.285 1.285 23 N -0.303 5.303 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.404 0.596 34 H 0.408 0.592 35 H 0.163 0.837 36 H 0.169 0.831 37 H 0.047 0.953 38 H 0.035 0.965 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.004 23.456 -9.708 25.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 C -0.202 4.202 4 C -0.045 4.045 5 O -0.124 6.124 6 N -0.319 5.319 7 C 0.430 3.570 8 O -0.420 6.420 9 N -0.289 5.289 10 C 0.026 3.974 11 C -0.315 4.315 12 C -0.098 4.098 13 N -0.100 5.100 14 C 0.131 3.869 15 C -0.645 4.645 16 H 0.082 0.918 17 C -0.183 4.183 18 N -0.540 5.540 19 Si 0.904 3.096 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.212 1.212 23 N -0.134 5.134 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.243 0.757 34 H 0.243 0.757 35 H 0.181 0.819 36 H 0.186 0.814 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.060 21.678 -8.754 23.402 hybrid contribution -0.842 1.846 -0.747 2.162 sum -1.903 23.524 -9.501 25.441 Atomic orbital electron populations 1.21861 0.94041 1.03015 1.01830 1.21061 0.97161 0.95691 0.96819 1.21791 1.01239 0.94575 1.02618 1.23188 0.99967 0.81384 0.99933 1.90587 1.76228 1.19333 1.26238 1.45925 1.62199 1.05643 1.18180 1.14910 0.80356 0.79192 0.82535 1.90892 1.43497 1.69039 1.38618 1.41010 1.58862 1.06216 1.22797 1.18667 0.99913 0.83065 0.95736 1.21546 1.13115 0.92104 1.04687 1.22560 0.99425 0.98667 0.89132 1.48766 1.38553 1.06948 1.15741 1.19759 0.99806 0.77508 0.89798 1.22105 0.90782 1.14214 1.37448 0.91838 1.25924 1.07167 0.92218 0.92945 1.70850 1.02539 1.37627 1.43026 0.83416 0.73187 0.76390 0.76609 1.20550 1.21239 1.21170 1.77346 1.24214 0.89902 1.21916 0.91487 0.92628 0.92315 0.89758 0.92279 0.91546 0.92287 0.91912 0.91917 0.75666 0.75692 0.81934 0.81424 0.93571 0.94766 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.09 37.16 0.34 -0.73 16 2 C -0.09 -0.57 3.16 -90.62 -0.29 -0.86 16 3 C -0.14 -0.66 9.19 37.16 0.34 -0.31 16 4 C 0.03 0.24 5.61 37.16 0.21 0.45 16 5 O -0.12 -1.43 10.64 -29.62 -0.32 -1.75 16 6 N -0.61 -7.00 6.39 27.64 0.18 -6.82 16 7 C 0.73 11.47 8.68 -86.91 -0.75 10.72 16 8 O -0.55 -10.81 13.88 -12.86 -0.18 -10.99 16 9 N -0.64 -9.90 5.46 -15.50 -0.08 -9.99 16 10 C 0.28 5.69 8.11 -154.36 -1.25 4.44 16 11 C -0.28 -5.76 9.61 -39.84 -0.38 -6.14 16 12 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 13 N -0.32 -7.48 3.67 -62.56 -0.23 -7.71 16 14 C 0.25 6.32 5.57 -5.19 -0.03 6.29 16 15 C -0.61 -17.08 9.24 -34.44 -0.32 -17.40 16 16 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 17 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 18 N -0.90 -26.36 13.65 55.43 0.76 -25.60 16 19 Si 1.08 24.91 29.90 -169.99 -5.08 19.82 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 23 N -0.30 -7.01 12.42 31.44 0.39 -6.62 16 24 H 0.07 0.62 7.82 -51.93 -0.41 0.21 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.40 2.90 8.56 -40.82 -0.35 2.55 16 34 H 0.41 4.89 8.84 -40.82 -0.36 4.53 16 35 H 0.16 3.28 5.91 -52.48 -0.31 2.97 16 36 H 0.17 2.77 8.06 -52.48 -0.42 2.35 16 37 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 38 H 0.03 0.90 8.00 -51.93 -0.42 0.49 16 39 H 0.27 7.61 7.22 -40.82 -0.29 7.31 16 LS Contribution 337.78 15.07 5.09 5.09 Total: -1.00 -35.20 337.78 -7.46 -42.67 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.56 Total: 4.06 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.43 Total: -2.18 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 1.01 Total: -56.73 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.49 Total: -12.73 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.08 Total: 19.82 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.20 -7.46 -42.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160418043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.457 kcal (2) G-P(sol) polarization free energy of solvation -35.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds