Wall clock time and date at job start Tue Mar 31 2020 05:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47067 * 2 1 4 4 C 1.52998 * 109.47012 * 119.99859 * 2 1 3 5 5 O 1.42904 * 109.47133 * 65.00133 * 4 2 1 6 6 N 1.41598 * 113.99949 * 180.02562 * 5 4 2 7 7 C 1.34779 * 119.99627 * 179.97438 * 6 5 4 8 8 O 1.21589 * 120.00349 * 359.97438 * 7 6 5 9 9 N 1.34787 * 119.99663 * 179.97438 * 7 6 5 10 10 C 1.40196 * 119.99563 * 179.97438 * 9 7 6 11 11 C 1.40395 * 125.97533 * 359.97438 * 10 9 7 12 12 C 1.35243 * 107.86535 * 179.71691 * 11 10 9 13 13 N 1.34960 * 107.86064 * 0.42509 * 12 11 10 14 14 C 1.46500 * 125.97985 * 179.83521 * 13 12 11 15 15 C 1.50706 * 109.47299 * 124.71356 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 N 1.31213 * 125.96849 * 179.97438 * 10 9 7 24 24 H 1.09001 * 109.47277 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46723 * 299.99992 * 1 2 3 26 26 H 1.09001 * 109.46521 * 59.99869 * 1 2 3 27 27 H 1.09001 * 109.46723 * 240.00008 * 2 1 3 28 28 H 1.09005 * 109.46599 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46668 * 299.99676 * 3 2 1 30 30 H 1.08991 * 109.47244 * 60.00277 * 3 2 1 31 31 H 1.08996 * 109.47369 * 305.00205 * 4 2 1 32 32 H 1.09001 * 109.47494 * 184.99672 * 4 2 1 33 33 H 0.96998 * 120.00271 * 359.97438 * 6 5 4 34 34 H 0.96998 * 119.99666 * 359.97438 * 9 7 6 35 35 H 1.08003 * 126.06887 * 0.02562 * 11 10 9 36 36 H 1.08007 * 126.06985 * 180.26350 * 12 11 10 37 37 H 1.09004 * 109.47078 * 4.72118 * 14 13 12 38 38 H 1.08993 * 109.47364 * 244.71890 * 14 13 12 39 39 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6620 -2.0982 1.1920 6 7 2.0874 -2.8590 2.3078 7 6 1.7953 -4.1729 2.3784 8 8 1.1660 -4.7047 1.4842 9 7 2.2007 -4.8973 3.4403 10 6 1.8964 -6.2638 3.5139 11 6 1.1799 -7.0019 2.5583 12 6 1.1051 -8.2805 2.9924 13 7 1.7399 -8.3519 4.1812 14 6 1.8933 -9.5541 5.0042 15 6 3.3552 -9.7855 5.2881 16 1 4.0959 -9.1048 4.8951 17 6 3.7471 -10.8661 6.0495 18 7 2.8447 -11.6920 6.5325 19 14 5.5590 -11.1525 6.4019 20 1 5.7141 -12.3678 7.2411 21 1 6.2889 -11.3382 5.1220 22 1 6.1145 -9.9790 7.1227 23 7 2.2314 -7.0766 4.4880 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6768 1.9563 0.8899 31 1 1.6054 -0.2617 2.1369 32 1 3.1263 -0.6444 1.2952 33 1 2.5891 -2.4347 3.0214 34 1 2.7031 -4.4731 4.1534 35 1 0.7665 -6.6178 1.6374 36 1 0.6209 -9.0987 2.4800 37 1 1.4863 -10.4136 4.4714 38 1 1.3572 -9.4220 5.9440 39 1 1.9038 -11.5432 6.3497 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160418043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:14 Heat of formation + Delta-G solvation = 29.637493 kcal Electronic energy + Delta-G solvation = -21176.300710 eV Core-core repulsion = 17736.378335 eV Total energy + Delta-G solvation = -3439.922375 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.30949 -40.87299 -38.98895 -36.47520 -36.11477 -35.56678 -33.39978 -32.00189 -30.99213 -28.14563 -28.06294 -26.96383 -25.15601 -23.49802 -22.27567 -21.69345 -21.06555 -19.52133 -19.28174 -19.02626 -17.96839 -17.22957 -16.80354 -16.39237 -16.23933 -15.79997 -15.55411 -15.34310 -15.02544 -14.84807 -14.25705 -14.08044 -13.90944 -13.69394 -13.50893 -13.21686 -13.01507 -12.61095 -12.43326 -12.13645 -12.05722 -11.94132 -11.79389 -11.71369 -11.61691 -11.24364 -10.99959 -10.67570 -10.13191 -9.81595 -9.17032 -8.75341 -6.53625 0.23102 0.98416 1.52538 1.59044 1.60094 1.66758 1.81181 2.29510 2.49664 2.65191 3.03221 3.49678 3.78719 3.84802 3.87143 4.13747 4.15824 4.39815 4.52035 4.56929 4.61190 4.65721 4.78344 4.79294 4.85970 4.96132 4.99891 5.10413 5.19364 5.31463 5.38623 5.42392 5.59683 5.80720 5.88022 5.95288 6.28577 6.43140 6.58474 7.01464 7.21966 7.35938 8.60539 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.039766 B = 0.002620 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.943966 B =10682.994007 C =11186.247044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 C -0.139 4.139 4 C 0.026 3.974 5 O -0.147 6.147 6 N -0.593 5.593 7 C 0.731 3.269 8 O -0.591 6.591 9 N -0.623 5.623 10 C 0.290 3.710 11 C -0.291 4.291 12 C 0.058 3.942 13 N -0.343 5.343 14 C 0.259 3.741 15 C -0.620 4.620 16 H 0.046 0.954 17 C -0.020 4.020 18 N -0.924 5.924 19 Si 1.120 2.880 20 H -0.276 1.276 21 H -0.272 1.272 22 H -0.274 1.274 23 N -0.341 5.341 24 H 0.039 0.961 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.426 0.574 34 H 0.426 0.574 35 H 0.167 0.833 36 H 0.203 0.797 37 H 0.055 0.945 38 H 0.018 0.982 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.044 25.257 -10.097 27.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 C -0.197 4.197 4 C -0.050 4.050 5 O -0.150 6.150 6 N -0.298 5.298 7 C 0.430 3.570 8 O -0.467 6.467 9 N -0.279 5.279 10 C 0.034 3.966 11 C -0.322 4.322 12 C -0.090 4.090 13 N -0.125 5.125 14 C 0.140 3.860 15 C -0.658 4.658 16 H 0.064 0.936 17 C -0.220 4.220 18 N -0.560 5.560 19 Si 0.941 3.059 20 H -0.201 1.201 21 H -0.197 1.197 22 H -0.200 1.200 23 N -0.172 5.172 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.270 0.730 34 H 0.264 0.736 35 H 0.184 0.816 36 H 0.219 0.781 37 H 0.072 0.928 38 H 0.036 0.964 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.089 23.566 -9.129 25.272 hybrid contribution -1.204 1.472 -0.720 2.034 sum -1.293 25.038 -9.849 26.937 Atomic orbital electron populations 1.21854 0.94645 1.01472 1.02724 1.21106 0.96659 0.96851 0.96059 1.21761 1.01688 0.92890 1.03329 1.23505 1.01312 0.79212 1.01002 1.90604 1.76756 1.21471 1.26216 1.45560 1.61060 1.04454 1.18736 1.14990 0.79944 0.80249 0.81820 1.90858 1.45393 1.70345 1.40066 1.40901 1.58816 1.04626 1.23551 1.18930 0.98347 0.84600 0.94676 1.21707 1.13368 0.92272 1.04882 1.23159 0.98108 0.99815 0.87915 1.48565 1.40446 1.06713 1.16786 1.19438 0.98190 0.78717 0.89668 1.22288 0.91924 1.14021 1.37610 0.93552 1.27280 1.10526 0.91841 0.92334 1.70946 1.02568 1.38392 1.44075 0.82874 0.68979 0.76773 0.77273 1.20102 1.19692 1.19971 1.77266 1.26129 0.90276 1.23523 0.94157 0.91859 0.91373 0.90793 0.91532 0.90983 0.91463 0.90230 0.90130 0.73036 0.73630 0.81588 0.78064 0.92775 0.96417 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.09 71.98 0.65 -1.32 16 2 C -0.09 -0.99 3.16 -10.79 -0.03 -1.03 16 3 C -0.14 -0.91 9.19 71.98 0.66 -0.25 16 4 C 0.03 0.33 5.61 71.98 0.40 0.73 16 5 O -0.15 -3.28 10.64 -21.43 -0.23 -3.51 16 6 N -0.59 -12.42 6.39 -184.73 -1.18 -13.60 16 7 C 0.73 22.15 8.68 179.05 1.55 23.70 16 8 O -0.59 -23.10 13.88 13.36 0.19 -22.92 16 9 N -0.62 -18.75 5.46 -321.22 -1.75 -20.51 16 10 C 0.29 11.66 8.11 133.31 1.08 12.74 16 11 C -0.29 -11.70 9.61 22.10 0.21 -11.49 16 12 C 0.06 2.32 11.44 83.52 0.96 3.27 16 13 N -0.34 -16.18 3.67 -351.84 -1.29 -17.47 16 14 C 0.26 13.32 5.57 85.64 0.48 13.80 16 15 C -0.62 -35.20 9.24 25.60 0.24 -34.97 16 16 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 17 C -0.02 -1.13 5.46 84.65 0.46 -0.67 16 18 N -0.92 -53.96 13.65 21.45 0.29 -53.67 16 19 Si 1.12 49.53 29.90 68.60 2.05 51.58 16 20 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 23 N -0.34 -15.83 12.42 -54.44 -0.68 -16.51 16 24 H 0.04 0.74 7.82 -2.39 -0.02 0.72 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.43 5.00 8.56 -92.71 -0.79 4.21 16 34 H 0.43 9.53 8.84 -92.71 -0.82 8.71 16 35 H 0.17 6.64 5.91 -2.91 -0.02 6.62 16 36 H 0.20 6.33 8.06 -2.91 -0.02 6.31 16 37 H 0.05 2.67 7.94 -2.39 -0.02 2.65 16 38 H 0.02 0.97 8.00 -2.39 -0.02 0.95 16 39 H 0.26 15.07 7.22 -92.71 -0.67 14.40 16 Total: -1.00 -76.19 337.78 3.63 -72.57 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -0.44 Total: 19.51 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 6.66 Total: 4.52 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -4.61 Total: -121.75 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.04 Total: -26.42 kcal Atomic # 14 Polarization: 49.53 SS G_CDS: 2.05 Total: 51.58 kcal Total: -76.19 3.63 -72.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160418043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.204 kcal (2) G-P(sol) polarization free energy of solvation -76.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds