Wall clock time and date at job start Tue Mar 31 2020 06:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53010 * 109.47187 * 2 1 4 4 C 1.53000 * 109.46917 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.46924 * 180.02562 * 4 3 2 6 6 N 1.29023 * 124.91305 * 89.99074 * 5 4 3 7 7 C 1.31791 * 117.12119 * 179.97438 * 6 5 4 8 8 C 1.50700 * 122.74978 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.47327 * 275.00662 * 8 7 6 10 10 C 1.46894 * 111.00123 * 293.95332 * 9 8 7 11 11 C 1.46902 * 110.99644 * 169.99950 * 9 8 7 12 12 H 1.08996 * 109.47149 * 309.99327 * 11 9 8 13 13 C 1.52997 * 109.47094 * 70.00221 * 11 9 8 14 14 C 1.50706 * 109.46577 * 190.00011 * 11 9 8 15 15 H 1.07999 * 120.00196 * 359.97438 * 14 11 9 16 16 C 1.37879 * 119.99394 * 180.02562 * 14 11 9 17 17 N 1.31514 * 120.00338 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99424 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.47347 * 59.99862 * 18 16 14 20 20 H 1.48503 * 109.46845 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47399 * 299.99813 * 18 16 14 22 22 C 1.33631 * 114.49805 * 0.24454 * 7 6 5 23 23 S 1.70972 * 124.91331 * 269.99818 * 5 4 3 24 24 H 1.09005 * 109.47310 * 59.99757 * 1 2 3 25 25 H 1.08999 * 109.46990 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46900 * 300.00155 * 1 2 3 27 27 H 1.09004 * 109.47293 * 240.00350 * 2 1 3 28 28 H 1.08997 * 109.47511 * 119.99968 * 2 1 3 29 29 H 1.08996 * 109.46850 * 60.00340 * 3 2 1 30 30 H 1.08996 * 109.46886 * 299.99809 * 3 2 1 31 31 H 1.08996 * 109.47409 * 59.99698 * 4 3 2 32 32 H 1.08996 * 109.46812 * 299.99396 * 4 3 2 33 33 H 1.08997 * 109.46811 * 155.00657 * 8 7 6 34 34 H 1.09000 * 109.46771 * 35.00800 * 8 7 6 35 35 H 1.09007 * 109.47149 * 296.05065 * 10 9 8 36 36 H 1.09002 * 109.47016 * 56.04488 * 10 9 8 37 37 H 1.08993 * 109.47669 * 176.04501 * 10 9 8 38 38 H 1.09002 * 109.47153 * 299.99508 * 13 11 9 39 39 H 1.09001 * 109.46832 * 179.97438 * 13 11 9 40 40 H 1.09004 * 109.47261 * 59.99681 * 13 11 9 41 41 H 0.96996 * 119.99730 * 179.97438 * 17 16 14 42 42 H 1.07999 * 126.03912 * 179.76752 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0724 2.8634 0.0000 6 7 4.3188 3.5590 1.0583 7 6 4.7545 4.7900 0.8802 8 6 5.0809 5.7131 2.0258 9 7 3.8556 6.3867 2.4763 10 6 3.3382 7.2878 1.4380 11 6 4.0846 7.1096 3.7344 12 1 4.5668 6.4461 4.4522 13 6 4.9854 8.3180 3.4717 14 6 2.7651 7.5784 4.2916 15 1 1.8483 7.3614 3.7636 16 6 2.7286 8.2853 5.4748 17 7 3.8451 8.5508 6.1170 18 14 1.0930 8.8657 6.1658 19 1 0.2193 7.6925 6.4215 20 1 1.3245 9.5977 7.4370 21 1 0.4350 9.7690 5.1878 22 6 4.8778 5.1544 -0.3995 23 16 4.3980 3.7868 -1.4016 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9330 0.9288 -0.8908 32 1 3.9336 0.9286 0.8891 33 1 5.8053 6.4582 1.6970 34 1 5.5017 5.1357 2.8490 35 1 4.0590 8.0852 1.2567 36 1 3.1777 6.7270 0.5172 37 1 2.3941 7.7200 1.7694 38 1 5.9398 7.9790 3.0687 39 1 5.1549 8.8547 4.4052 40 1 4.5031 8.9816 2.7539 41 1 3.8194 9.0484 6.9492 42 1 5.2136 6.1168 -0.7566 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161902720.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:36 Heat of formation + Delta-G solvation = 31.726699 kcal Electronic energy + Delta-G solvation = -19922.017317 eV Core-core repulsion = 17028.478752 eV Total energy + Delta-G solvation = -2893.538566 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.80628 -37.06325 -35.90681 -32.95044 -31.85719 -29.59611 -28.22258 -27.15510 -25.36024 -25.16838 -23.79086 -21.84445 -21.14481 -19.62640 -19.17894 -17.33415 -16.09968 -15.64303 -15.46578 -15.05437 -14.67717 -14.20626 -13.86551 -13.77878 -13.51833 -13.30027 -12.93913 -12.55871 -12.51997 -12.32589 -11.72653 -11.41911 -11.39975 -11.20557 -11.12552 -11.07318 -10.89088 -10.75067 -10.70431 -10.65010 -10.43624 -10.02660 -9.82302 -9.37051 -9.19143 -8.89837 -8.51559 -8.35206 -7.12744 -5.97855 -4.01123 0.89384 1.52661 1.88884 3.04855 3.35162 3.39010 3.42724 4.14820 4.45007 4.73315 4.80625 4.88148 5.14655 5.18493 5.23371 5.34039 5.38973 5.47432 5.52454 5.64646 5.66290 5.74026 5.80945 5.99329 5.99700 6.09474 6.16595 6.20893 6.25381 6.39188 6.44556 6.67577 6.81720 6.89301 7.12013 7.46667 7.72412 7.86320 8.04771 8.16502 8.39745 8.60876 9.04229 9.63484 11.09350 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.016416 B = 0.004149 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.223838 B = 6746.748005 C = 7953.207063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.115 4.115 4 C -0.040 4.040 5 C 0.052 3.948 6 N -0.448 5.448 7 C 0.100 3.900 8 C 0.123 3.877 9 N -0.525 5.525 10 C 0.032 3.968 11 C 0.213 3.787 12 H 0.040 0.960 13 C -0.173 4.173 14 C -0.496 4.496 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.897 3.103 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.258 4.258 23 S 0.080 5.920 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.019 0.981 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.006 0.994 39 H 0.089 0.911 40 H 0.032 0.968 41 H 0.260 0.740 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.312 -12.803 -15.519 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.154 4.154 4 C -0.081 4.081 5 C -0.227 4.227 6 N -0.162 5.162 7 C -0.032 4.032 8 C -0.008 4.008 9 N -0.249 5.249 10 C -0.116 4.116 11 C 0.107 3.893 12 H 0.058 0.942 13 C -0.232 4.232 14 C -0.535 4.535 15 H 0.079 0.921 16 C -0.143 4.143 17 N -0.535 5.535 18 Si 0.725 3.275 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.398 4.398 23 S 0.334 5.666 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.037 0.963 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.025 0.975 39 H 0.108 0.892 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.120 -13.487 -15.804 20.777 hybrid contribution 0.005 1.750 0.908 1.971 sum -0.114 -11.737 -14.896 18.965 Atomic orbital electron populations 1.21771 0.95725 1.01487 1.02118 1.21510 0.96070 0.96335 1.02049 1.21636 0.93215 0.97319 1.03266 1.20261 0.96236 0.87733 1.03897 1.27032 1.03471 1.01579 0.90600 1.66084 1.13144 1.06068 1.30896 1.20410 0.97832 0.90871 0.94119 1.20590 0.93043 0.93784 0.93359 1.62296 1.26058 1.31611 1.04903 1.22275 1.00590 0.94698 0.94047 1.19332 0.95551 0.89735 0.84716 0.94190 1.22426 0.96379 1.01754 1.02684 1.21052 0.92531 1.33615 1.06315 0.92073 1.24913 0.96454 0.96171 0.96728 1.69871 1.25938 1.40867 1.16868 0.86578 0.84011 0.78785 0.78125 1.20235 1.21398 1.20414 1.26783 1.13584 1.03665 0.95723 1.83701 1.62193 1.06790 1.13919 0.92780 0.92831 0.92448 0.92066 0.91705 0.90750 0.91793 0.90046 0.88846 0.93958 0.89765 0.96267 0.94068 0.90972 0.97475 0.89220 0.94908 0.92975 0.81071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.12 -0.99 5.93 -26.73 -0.16 -1.15 16 3 C -0.12 -1.17 5.20 -26.73 -0.14 -1.31 16 4 C -0.04 -0.42 5.80 -27.88 -0.16 -0.58 16 5 C 0.05 0.73 6.64 -13.45 -0.09 0.64 16 6 N -0.45 -7.84 10.53 -8.06 -0.08 -7.92 16 7 C 0.10 1.73 5.59 -84.22 -0.47 1.26 16 8 C 0.12 2.38 4.98 -4.98 -0.02 2.36 16 9 N -0.52 -11.72 4.69 -237.73 -1.12 -12.84 16 10 C 0.03 0.66 8.56 60.06 0.51 1.17 16 11 C 0.21 5.43 2.31 -68.86 -0.16 5.27 16 12 H 0.04 1.12 7.93 -51.93 -0.41 0.71 16 13 C -0.17 -4.19 8.22 37.16 0.31 -3.88 16 14 C -0.50 -13.82 7.97 -34.44 -0.27 -14.09 16 15 H 0.06 1.72 7.10 -52.49 -0.37 1.35 16 16 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 17 N -0.90 -25.70 11.32 55.43 0.63 -25.07 16 18 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 22 C -0.26 -3.77 9.76 29.12 0.28 -3.49 16 23 S 0.08 0.98 23.18 -107.50 -2.49 -1.51 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.04 0.77 7.02 -51.93 -0.36 0.41 16 34 H 0.08 1.69 7.93 -51.93 -0.41 1.28 16 35 H 0.02 0.37 6.21 -51.92 -0.32 0.05 16 36 H 0.04 0.75 6.23 -51.93 -0.32 0.43 16 37 H 0.07 1.56 6.86 -51.93 -0.36 1.21 16 38 H 0.01 0.14 6.91 -51.93 -0.36 -0.22 16 39 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 40 H 0.03 0.76 6.33 -51.93 -0.33 0.44 16 41 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 42 H 0.17 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 344.97 15.07 5.20 5.20 Total: -1.00 -29.79 344.97 -9.91 -39.70 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -6.93 Total: -1.03 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -0.10 Total: -13.15 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.57 Total: -45.83 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.49 Total: -1.51 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.79 -9.91 -39.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161902720.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.429 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds