Wall clock time and date at job start Tue Mar 31 2020 06:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46785 * 2 1 4 4 C 1.52997 * 109.47239 * 179.97438 * 3 2 1 5 5 C 1.50692 * 109.47310 * 179.97438 * 4 3 2 6 6 N 1.29031 * 124.91756 * 90.00267 * 5 4 3 7 7 C 1.31780 * 117.12647 * 179.97438 * 6 5 4 8 8 C 1.50702 * 122.74858 * 179.97438 * 7 6 5 9 9 N 1.46895 * 109.46960 * 275.00200 * 8 7 6 10 10 C 1.46905 * 111.00088 * 293.95181 * 9 8 7 11 11 C 1.46906 * 110.99789 * 169.99981 * 9 8 7 12 12 H 1.09004 * 109.47040 * 59.99976 * 11 9 8 13 13 C 1.52993 * 109.47378 * 300.00188 * 11 9 8 14 14 C 1.50703 * 109.47109 * 179.97438 * 11 9 8 15 15 H 1.08005 * 119.99876 * 0.02562 * 14 11 9 16 16 C 1.37875 * 119.99989 * 180.02562 * 14 11 9 17 17 N 1.31518 * 119.99944 * 359.97438 * 16 14 11 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 11 19 19 H 1.48493 * 109.47285 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47233 * 119.99722 * 18 16 14 21 21 H 1.48500 * 109.46790 * 239.99650 * 18 16 14 22 22 C 1.33641 * 114.49850 * 0.23462 * 7 6 5 23 23 S 1.70982 * 124.91779 * 269.99972 * 5 4 3 24 24 H 1.08996 * 109.46847 * 60.00526 * 1 2 3 25 25 H 1.09001 * 109.46776 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47155 * 300.00368 * 1 2 3 27 27 H 1.08993 * 109.47045 * 240.00172 * 2 1 3 28 28 H 1.08996 * 109.46847 * 119.99473 * 2 1 3 29 29 H 1.08999 * 109.47239 * 59.99547 * 3 2 1 30 30 H 1.09004 * 109.46994 * 299.99993 * 3 2 1 31 31 H 1.09008 * 109.46900 * 59.99773 * 4 3 2 32 32 H 1.08999 * 109.47350 * 300.00522 * 4 3 2 33 33 H 1.08998 * 109.46793 * 155.00374 * 8 7 6 34 34 H 1.09001 * 109.47154 * 35.00514 * 8 7 6 35 35 H 1.08991 * 109.47190 * 296.04768 * 10 9 8 36 36 H 1.09001 * 109.46809 * 56.05384 * 10 9 8 37 37 H 1.08997 * 109.46774 * 176.04528 * 10 9 8 38 38 H 1.08992 * 109.47715 * 179.97438 * 13 11 9 39 39 H 1.09004 * 109.46862 * 299.99897 * 13 11 9 40 40 H 1.09004 * 109.46998 * 59.99419 * 13 11 9 41 41 H 0.96997 * 119.99752 * 180.02562 * 17 16 14 42 42 H 1.08004 * 126.03215 * 179.76501 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4427 0.0006 5 6 4.0722 2.8635 0.0000 6 7 4.3180 3.5604 1.0577 7 6 4.7537 4.7911 0.8785 8 6 5.0793 5.7155 2.0234 9 7 3.8537 6.3896 2.4721 10 6 3.3370 7.2896 1.4324 11 6 4.0816 7.1139 3.7297 12 1 4.8587 7.8638 3.5814 13 6 4.5242 6.1284 4.8130 14 6 2.8053 7.7916 4.1575 15 1 1.9139 7.6937 3.5556 16 6 2.7757 8.5367 5.3172 17 7 3.8611 8.6556 6.0504 18 14 1.1935 9.3761 5.8478 19 1 0.1246 9.0887 4.8579 20 1 0.7849 8.8649 7.1808 21 1 1.4136 10.8426 5.9263 22 6 4.8780 5.1541 -0.4016 23 16 4.3990 3.7854 -1.4024 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 1.6766 1.9564 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 3.9337 0.9287 -0.8892 32 1 3.9330 0.9289 0.8908 33 1 5.8039 6.4602 1.6942 34 1 5.4995 5.1391 2.8475 35 1 4.0578 8.0867 1.2509 36 1 3.1771 6.7277 0.5122 37 1 2.3925 7.7220 1.7628 38 1 4.6938 6.6658 5.7459 39 1 3.7471 5.3785 4.9613 40 1 5.4474 5.6385 4.5033 41 1 3.8401 9.1794 6.8664 42 1 5.2140 6.1161 -0.7594 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161902865.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:40 Heat of formation + Delta-G solvation = 32.124512 kcal Electronic energy + Delta-G solvation = -19936.231052 eV Core-core repulsion = 17042.709737 eV Total energy + Delta-G solvation = -2893.521315 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.79673 -36.89822 -35.87588 -32.98214 -31.84068 -29.59496 -28.70613 -27.33976 -25.40939 -24.67508 -23.43530 -21.82551 -21.14637 -19.65922 -19.33697 -17.32789 -16.26752 -15.64454 -15.33967 -15.11716 -14.71392 -14.04166 -13.97088 -13.81020 -13.62238 -13.21285 -12.90738 -12.49599 -12.44659 -12.29532 -11.81684 -11.46203 -11.40974 -11.38055 -11.12527 -11.08366 -10.97103 -10.71310 -10.64132 -10.48304 -10.09245 -10.02100 -9.83112 -9.36184 -9.18796 -8.87391 -8.54083 -8.36684 -7.15731 -5.99547 -4.03671 0.89558 1.52879 1.89163 3.05130 3.30877 3.38672 3.43488 4.14942 4.43210 4.73099 4.80383 4.87944 5.14214 5.16163 5.23244 5.32606 5.39324 5.47157 5.52355 5.64860 5.66093 5.73765 5.80615 5.99140 5.99610 6.09547 6.17539 6.20669 6.24644 6.40739 6.44445 6.77958 6.89480 7.10517 7.17347 7.53629 7.73446 7.85049 8.05610 8.23371 8.33759 8.60571 9.02702 9.61124 11.07398 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.017043 B = 0.004056 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.508934 B = 6901.310751 C = 7793.214382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.115 4.115 4 C -0.040 4.040 5 C 0.052 3.948 6 N -0.448 5.448 7 C 0.100 3.900 8 C 0.118 3.882 9 N -0.528 5.528 10 C 0.036 3.964 11 C 0.214 3.786 12 H -0.001 1.001 13 C -0.133 4.133 14 C -0.501 4.501 15 H 0.063 0.937 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.896 3.104 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.259 4.259 23 S 0.080 5.920 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.038 0.962 34 H 0.093 0.907 35 H 0.011 0.989 36 H 0.041 0.959 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.036 0.964 40 H 0.009 0.991 41 H 0.260 0.740 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.115 -13.619 -14.974 20.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.154 4.154 4 C -0.081 4.081 5 C -0.227 4.227 6 N -0.162 5.162 7 C -0.032 4.032 8 C -0.013 4.013 9 N -0.253 5.253 10 C -0.112 4.112 11 C 0.108 3.892 12 H 0.016 0.984 13 C -0.191 4.191 14 C -0.540 4.540 15 H 0.082 0.918 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.212 1.212 22 C -0.398 4.398 23 S 0.334 5.666 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.056 0.944 34 H 0.111 0.889 35 H 0.030 0.970 36 H 0.060 0.940 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.055 0.945 40 H 0.027 0.973 41 H 0.069 0.931 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.316 -14.295 -15.261 20.913 hybrid contribution 0.021 1.843 0.839 2.025 sum -0.295 -12.452 -14.422 19.056 Atomic orbital electron populations 1.21772 0.95726 1.01487 1.02114 1.21509 0.96069 0.96336 1.02049 1.21635 0.93222 0.97313 1.03262 1.20257 0.96227 0.87737 1.03893 1.27032 1.03495 1.01574 0.90603 1.66077 1.13148 1.06016 1.30911 1.20401 0.97804 0.90888 0.94073 1.20690 0.92916 0.94119 0.93539 1.62083 1.26403 1.31941 1.04827 1.22248 1.00811 0.94285 0.93900 1.19275 0.96182 0.90144 0.83597 0.98361 1.21852 0.96520 0.98512 1.02214 1.21182 0.96222 1.29082 1.07486 0.91840 1.24924 0.96381 0.96539 0.96389 1.69905 1.27334 1.40895 1.15153 0.86466 0.83551 0.78984 0.78563 1.19776 1.21003 1.21168 1.26795 1.13614 1.03663 0.95737 1.83698 1.62188 1.06804 1.13917 0.92777 0.92829 0.92455 0.92061 0.91711 0.90771 0.91784 0.90056 0.88849 0.94392 0.88924 0.97021 0.93982 0.90567 0.89632 0.94507 0.97252 0.93055 0.81065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16 2 C -0.12 -0.99 5.93 -26.73 -0.16 -1.15 16 3 C -0.12 -1.17 5.20 -26.73 -0.14 -1.30 16 4 C -0.04 -0.42 5.80 -27.89 -0.16 -0.58 16 5 C 0.05 0.72 6.64 -13.46 -0.09 0.63 16 6 N -0.45 -7.83 10.53 -8.06 -0.08 -7.92 16 7 C 0.10 1.75 5.59 -84.22 -0.47 1.28 16 8 C 0.12 2.31 5.22 -4.98 -0.03 2.28 16 9 N -0.53 -11.89 4.61 -237.73 -1.10 -12.99 16 10 C 0.04 0.74 8.99 60.07 0.54 1.28 16 11 C 0.21 5.51 2.06 -68.86 -0.14 5.37 16 12 H 0.00 -0.03 8.14 -51.93 -0.42 -0.46 16 13 C -0.13 -3.35 8.77 37.15 0.33 -3.02 16 14 C -0.50 -13.94 7.93 -34.44 -0.27 -14.21 16 15 H 0.06 1.77 6.39 -52.48 -0.34 1.44 16 16 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 17 N -0.89 -25.67 11.32 55.43 0.63 -25.04 16 18 Si 0.90 21.56 29.54 -169.99 -5.02 16.53 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 C -0.26 -3.80 9.76 29.12 0.28 -3.52 16 23 S 0.08 0.98 23.18 -107.50 -2.49 -1.51 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.09 1.88 5.83 -51.93 -0.30 1.58 16 35 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.04 0.77 6.23 -51.93 -0.32 0.45 16 37 H 0.08 1.67 6.23 -51.93 -0.32 1.34 16 38 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.01 0.20 6.20 -51.93 -0.32 -0.12 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.17 2.21 8.06 -52.48 -0.42 1.78 16 LS Contribution 346.71 15.07 5.22 5.22 Total: -1.00 -30.01 346.71 -9.85 -39.86 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -6.97 Total: -1.92 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: -0.04 Total: -12.25 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.55 Total: -45.94 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.49 Total: -1.51 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.01 -9.85 -39.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161902865.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.989 kcal (2) G-P(sol) polarization free energy of solvation -30.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds