Wall clock time and date at job start Tue Mar 31 2020 06:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.29030 * 124.91995 * 2 1 4 4 C 1.31776 * 117.12877 * 179.97438 * 3 2 1 5 5 C 1.33635 * 114.50416 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.04002 * 180.02562 * 5 4 3 7 7 N 1.46904 * 109.47199 * 89.99675 * 6 5 4 8 8 C 1.46907 * 110.99601 * 66.04892 * 7 6 5 9 9 C 1.50693 * 109.47444 * 62.89359 * 8 7 6 10 10 H 1.07998 * 120.00435 * 4.66300 * 9 8 7 11 11 C 1.37876 * 119.99874 * 184.65785 * 9 8 7 12 12 N 1.31511 * 120.00137 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99793 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47488 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46761 * 120.00578 * 13 11 9 16 16 H 1.48499 * 109.47147 * 240.00234 * 13 11 9 17 17 C 1.46899 * 110.99965 * 189.99860 * 7 6 5 18 18 C 1.52994 * 109.47400 * 163.94637 * 17 7 6 19 19 C 1.52997 * 109.47392 * 178.06761 * 18 17 7 20 20 C 1.53001 * 109.47026 * 65.00304 * 19 18 17 21 21 C 1.53008 * 109.47144 * 184.99839 * 19 18 17 22 22 S 1.70978 * 124.91832 * 179.97438 * 2 1 3 23 23 H 1.08996 * 109.47138 * 269.99645 * 1 2 3 24 24 H 1.08997 * 109.47367 * 30.00235 * 1 2 3 25 25 H 1.09003 * 109.46926 * 149.99622 * 1 2 3 26 26 H 1.08005 * 122.75045 * 180.26755 * 4 3 2 27 27 H 1.09011 * 109.46921 * 209.99601 * 6 5 4 28 28 H 1.08998 * 109.47320 * 329.99522 * 6 5 4 29 29 H 1.09007 * 109.46511 * 182.89661 * 8 7 6 30 30 H 1.08996 * 109.47036 * 302.88595 * 8 7 6 31 31 H 0.97000 * 120.00324 * 179.97438 * 12 11 9 32 32 H 1.09009 * 109.47239 * 283.94841 * 17 7 6 33 33 H 1.09001 * 109.47071 * 43.94490 * 17 7 6 34 34 H 1.09005 * 109.47170 * 298.07235 * 18 17 7 35 35 H 1.09010 * 109.46940 * 58.06727 * 18 17 7 36 36 H 1.08997 * 109.47016 * 304.99880 * 19 18 17 37 37 H 1.08994 * 109.47205 * 59.99564 * 20 19 18 38 38 H 1.09000 * 109.47205 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.46710 * 299.99824 * 20 19 18 40 40 H 1.09001 * 109.47020 * 60.00045 * 21 19 18 41 41 H 1.08992 * 109.47130 * 179.97438 * 21 19 18 42 42 H 1.09002 * 109.46766 * 300.00529 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8793 0.0005 5 6 3.9354 -0.4006 0.0004 6 6 5.3575 -0.8993 0.0015 7 7 5.8184 -1.0617 1.3869 8 6 5.0732 -2.1290 2.0678 9 6 5.3335 -3.4429 1.3772 10 1 6.0446 -3.4951 0.5661 11 6 4.6637 -4.5784 1.7809 12 7 3.7974 -4.5149 2.7683 13 14 4.9858 -6.2069 0.9243 14 1 5.9962 -6.0118 -0.1462 15 1 5.4948 -7.1930 1.9111 16 1 3.7227 -6.7106 0.3275 17 6 7.2643 -1.3166 1.4341 18 6 7.7769 -1.0846 2.8569 19 6 9.2735 -1.3965 2.9170 20 6 10.0378 -0.3992 2.0439 21 6 9.7600 -1.2853 4.3634 22 16 2.4856 -1.4020 0.0006 23 1 -0.3633 -0.0001 1.0276 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 4.2531 1.7001 0.0048 27 1 5.4062 -1.8593 -0.5126 28 1 5.9953 -0.1796 -0.5116 29 1 5.3985 -2.1936 3.1062 30 1 4.0069 -1.9059 2.0344 31 1 3.3259 -5.3136 3.0521 32 1 7.4614 -2.3477 1.1405 33 1 7.7751 -0.6398 0.7491 34 1 7.6109 -0.0446 3.1379 35 1 7.2417 -1.7372 3.5468 36 1 9.4488 -2.4083 2.5515 37 1 9.8625 0.6125 2.4094 38 1 11.1041 -0.6211 2.0871 39 1 9.6913 -0.4784 1.0135 40 1 9.2155 -1.9958 4.9855 41 1 10.8261 -1.5079 4.4063 42 1 9.5846 -0.2735 4.7289 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173545809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:40 Heat of formation + Delta-G solvation = 23.877662 kcal Electronic energy + Delta-G solvation = -20411.749179 eV Core-core repulsion = 17517.870254 eV Total energy + Delta-G solvation = -2893.878925 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.13394 -37.55444 -35.49339 -32.61654 -31.89951 -29.57105 -28.08619 -26.92429 -26.39182 -24.26378 -23.40297 -22.61661 -20.17536 -19.42349 -18.53788 -17.45614 -16.36162 -15.36903 -15.08486 -14.61371 -14.44795 -14.22558 -13.88698 -13.57419 -13.16782 -13.10010 -12.98618 -12.41443 -12.30891 -12.14947 -12.03563 -11.79253 -11.49290 -11.29990 -11.11295 -10.91821 -10.80554 -10.47771 -10.38868 -10.30307 -10.17245 -9.97189 -9.85164 -9.59305 -9.04437 -8.56818 -8.42247 -8.13589 -7.21466 -6.05641 -4.14530 1.29330 1.98611 2.45795 3.22217 3.31396 3.33420 3.36684 4.36635 4.63856 4.91909 5.22787 5.24341 5.28249 5.40461 5.42838 5.58713 5.66277 5.72122 5.79911 5.84440 5.85727 5.99321 6.01251 6.05002 6.11056 6.15134 6.20310 6.28610 6.40574 6.51020 6.56958 6.60983 6.76014 6.87092 6.94512 7.22992 7.51440 7.87528 7.99572 8.20472 8.25462 8.28141 8.94685 9.51722 10.98993 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.011930 B = 0.006547 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.441788 B = 4275.488442 C = 6052.298415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.001 4.001 3 N -0.483 5.483 4 C 0.025 3.975 5 C -0.186 4.186 6 C 0.133 3.867 7 N -0.539 5.539 8 C 0.179 3.821 9 C -0.548 4.548 10 H 0.056 0.944 11 C 0.071 3.929 12 N -0.883 5.883 13 Si 0.880 3.120 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.283 1.283 17 C 0.061 3.939 18 C -0.103 4.103 19 C -0.097 4.097 20 C -0.145 4.145 21 C -0.144 4.144 22 S 0.182 5.818 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.167 0.833 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.039 0.961 31 H 0.261 0.739 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.047 0.953 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.563 6.957 -3.766 8.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.277 4.277 3 N -0.199 5.199 4 C -0.127 4.127 5 C -0.308 4.308 6 C 0.003 3.997 7 N -0.263 5.263 8 C 0.053 3.947 9 C -0.587 4.587 10 H 0.074 0.926 11 C -0.132 4.132 12 N -0.522 5.522 13 Si 0.708 3.292 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.067 4.067 18 C -0.141 4.141 19 C -0.116 4.116 20 C -0.202 4.202 21 C -0.202 4.202 22 S 0.437 5.563 23 H 0.098 0.902 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.184 0.816 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.840 6.737 -3.409 7.772 hybrid contribution 0.935 -1.129 -0.685 1.618 sum 2.774 5.608 -4.094 7.477 Atomic orbital electron populations 1.20297 0.86185 1.03243 1.03328 1.26981 1.01628 0.93020 1.06090 1.66229 1.04963 1.32202 1.16478 1.21474 0.90790 0.95748 1.04661 1.25909 1.00241 0.95795 1.08891 1.20287 0.87652 0.99469 0.92312 1.62579 1.03691 1.47294 1.12698 1.19909 0.94371 0.86162 0.94233 1.21667 1.24240 0.94441 1.18382 0.92633 1.24878 0.94870 0.98617 0.94847 1.69946 1.26150 1.28960 1.27112 0.86732 0.78200 0.84549 0.79753 1.19892 1.20957 1.20855 1.21990 0.88576 0.99800 0.96360 1.21524 0.93325 1.01459 0.97781 1.21098 0.95783 0.99491 0.95195 1.21867 0.99140 0.99166 1.00045 1.21813 1.00167 1.01564 0.96605 1.84671 0.96594 1.09558 1.65518 0.90200 0.90138 0.90680 0.81616 0.92622 0.91003 0.95179 0.94259 0.92882 0.93417 0.93107 0.92401 0.91314 0.91397 0.92998 0.93551 0.92577 0.92680 0.93383 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.46 36.00 0.38 -0.52 16 2 C 0.00 -0.01 7.39 -13.46 -0.10 -0.11 16 3 N -0.48 -8.87 10.54 -11.87 -0.13 -9.00 16 4 C 0.03 0.45 11.25 -19.19 -0.22 0.24 16 5 C -0.19 -3.53 5.32 -35.92 -0.19 -3.72 16 6 C 0.13 2.52 5.31 -4.98 -0.03 2.49 16 7 N -0.54 -11.08 4.66 -237.51 -1.11 -12.18 16 8 C 0.18 4.39 4.77 -4.98 -0.02 4.36 16 9 C -0.55 -14.14 7.34 -34.44 -0.25 -14.40 16 10 H 0.06 1.44 5.95 -52.49 -0.31 1.12 16 11 C 0.07 1.90 5.46 -17.82 -0.10 1.81 16 12 N -0.88 -24.81 13.29 55.43 0.74 -24.07 16 13 Si 0.88 20.71 29.54 -169.99 -5.02 15.69 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 C 0.06 1.11 4.51 -3.83 -0.02 1.10 16 18 C -0.10 -1.74 4.76 -26.74 -0.13 -1.87 16 19 C -0.10 -1.37 2.92 -90.62 -0.26 -1.63 16 20 C -0.14 -1.77 8.95 37.16 0.33 -1.44 16 21 C -0.14 -1.83 9.19 37.16 0.34 -1.49 16 22 S 0.18 3.45 21.73 -107.50 -2.34 1.11 16 23 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.17 2.61 8.06 -52.48 -0.42 2.19 16 27 H 0.06 1.14 6.58 -51.92 -0.34 0.80 16 28 H 0.07 1.17 7.86 -51.93 -0.41 0.76 16 29 H 0.03 0.81 6.64 -51.93 -0.34 0.46 16 30 H 0.04 1.04 5.93 -51.93 -0.31 0.73 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.05 0.97 6.16 -51.92 -0.32 0.65 16 33 H 0.05 0.82 6.32 -51.93 -0.33 0.49 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 1.34 6.68 -51.92 -0.35 1.00 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.69 6.61 -51.93 -0.34 0.35 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 345.22 15.07 5.20 5.20 Total: -1.00 -28.52 345.22 -9.75 -38.27 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -6.84 Total: 0.18 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -0.26 Total: -15.20 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: -0.49 Total: -45.25 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -2.34 Total: 1.11 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.52 -9.75 -38.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173545809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.148 kcal (2) G-P(sol) polarization free energy of solvation -28.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds