Wall clock time and date at job start Tue Mar 31 2020 06:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.29030 * 124.91995 * 2 1 4 4 C 1.31776 * 117.12877 * 179.97438 * 3 2 1 5 5 C 1.33635 * 114.50416 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.04002 * 180.02562 * 5 4 3 7 7 N 1.46904 * 109.47199 * 89.99675 * 6 5 4 8 8 C 1.46907 * 110.99601 * 66.04892 * 7 6 5 9 9 C 1.50693 * 109.47444 * 62.89359 * 8 7 6 10 10 H 1.07998 * 120.00435 * 4.66300 * 9 8 7 11 11 C 1.37876 * 119.99874 * 184.65785 * 9 8 7 12 12 N 1.31511 * 120.00137 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99793 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.47488 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.46761 * 120.00578 * 13 11 9 16 16 H 1.48499 * 109.47147 * 240.00234 * 13 11 9 17 17 C 1.46899 * 110.99965 * 189.99860 * 7 6 5 18 18 C 1.52994 * 109.47400 * 163.94637 * 17 7 6 19 19 C 1.52997 * 109.47392 * 178.06761 * 18 17 7 20 20 C 1.53001 * 109.47026 * 65.00304 * 19 18 17 21 21 C 1.53008 * 109.47144 * 184.99839 * 19 18 17 22 22 S 1.70978 * 124.91832 * 179.97438 * 2 1 3 23 23 H 1.08996 * 109.47138 * 269.99645 * 1 2 3 24 24 H 1.08997 * 109.47367 * 30.00235 * 1 2 3 25 25 H 1.09003 * 109.46926 * 149.99622 * 1 2 3 26 26 H 1.08005 * 122.75045 * 180.26755 * 4 3 2 27 27 H 1.09011 * 109.46921 * 209.99601 * 6 5 4 28 28 H 1.08998 * 109.47320 * 329.99522 * 6 5 4 29 29 H 1.09007 * 109.46511 * 182.89661 * 8 7 6 30 30 H 1.08996 * 109.47036 * 302.88595 * 8 7 6 31 31 H 0.97000 * 120.00324 * 179.97438 * 12 11 9 32 32 H 1.09009 * 109.47239 * 283.94841 * 17 7 6 33 33 H 1.09001 * 109.47071 * 43.94490 * 17 7 6 34 34 H 1.09005 * 109.47170 * 298.07235 * 18 17 7 35 35 H 1.09010 * 109.46940 * 58.06727 * 18 17 7 36 36 H 1.08997 * 109.47016 * 304.99880 * 19 18 17 37 37 H 1.08994 * 109.47205 * 59.99564 * 20 19 18 38 38 H 1.09000 * 109.47205 * 179.97438 * 20 19 18 39 39 H 1.09000 * 109.46710 * 299.99824 * 20 19 18 40 40 H 1.09001 * 109.47020 * 60.00045 * 21 19 18 41 41 H 1.08992 * 109.47130 * 179.97438 * 21 19 18 42 42 H 1.09002 * 109.46766 * 300.00529 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8793 0.0005 5 6 3.9354 -0.4006 0.0004 6 6 5.3575 -0.8993 0.0015 7 7 5.8184 -1.0617 1.3869 8 6 5.0732 -2.1290 2.0678 9 6 5.3335 -3.4429 1.3772 10 1 6.0446 -3.4951 0.5661 11 6 4.6637 -4.5784 1.7809 12 7 3.7974 -4.5149 2.7683 13 14 4.9858 -6.2069 0.9243 14 1 5.9962 -6.0118 -0.1462 15 1 5.4948 -7.1930 1.9111 16 1 3.7227 -6.7106 0.3275 17 6 7.2643 -1.3166 1.4341 18 6 7.7769 -1.0846 2.8569 19 6 9.2735 -1.3965 2.9170 20 6 10.0378 -0.3992 2.0439 21 6 9.7600 -1.2853 4.3634 22 16 2.4856 -1.4020 0.0006 23 1 -0.3633 -0.0001 1.0276 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 4.2531 1.7001 0.0048 27 1 5.4062 -1.8593 -0.5126 28 1 5.9953 -0.1796 -0.5116 29 1 5.3985 -2.1936 3.1062 30 1 4.0069 -1.9059 2.0344 31 1 3.3259 -5.3136 3.0521 32 1 7.4614 -2.3477 1.1405 33 1 7.7751 -0.6398 0.7491 34 1 7.6109 -0.0446 3.1379 35 1 7.2417 -1.7372 3.5468 36 1 9.4488 -2.4083 2.5515 37 1 9.8625 0.6125 2.4094 38 1 11.1041 -0.6211 2.0871 39 1 9.6913 -0.4784 1.0135 40 1 9.2155 -1.9958 4.9855 41 1 10.8261 -1.5079 4.4063 42 1 9.5846 -0.2735 4.7289 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173545809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:39 Heat of formation + Delta-G solvation = 7.479373 kcal Electronic energy + Delta-G solvation = -20412.460262 eV Core-core repulsion = 17517.870254 eV Total energy + Delta-G solvation = -2894.590009 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.54961 -39.08694 -36.81990 -34.57885 -33.27033 -30.86404 -29.76725 -28.02930 -27.93342 -25.83432 -25.06063 -24.01370 -21.72556 -20.74628 -19.96345 -18.92909 -18.31661 -16.97944 -16.67852 -16.12375 -15.86480 -15.58274 -15.40319 -14.98405 -14.50535 -14.39239 -14.30845 -14.13486 -13.54948 -13.31301 -13.15994 -13.10189 -12.98213 -12.90410 -12.65400 -12.63559 -12.18209 -12.09420 -11.97498 -11.87292 -11.72186 -11.42591 -11.33933 -11.19595 -10.55332 -10.48009 -9.99986 -9.57002 -8.97477 -8.09749 -6.26528 -0.11753 0.57299 1.03975 1.33786 1.37260 1.45779 1.96133 2.38367 3.16124 3.37159 3.43688 4.05045 4.08888 4.12573 4.20415 4.25168 4.40895 4.51576 4.65335 4.67062 4.69653 4.73197 4.82503 4.85557 4.94481 5.02511 5.04397 5.07776 5.12433 5.21099 5.28030 5.34924 5.37277 5.41639 5.46144 5.56933 5.60983 5.82484 6.09473 6.28022 6.54499 6.85641 6.92063 7.42943 8.92546 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.011930 B = 0.006547 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2346.441788 B = 4275.488442 C = 6052.298415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.020 3.980 3 N -0.499 5.499 4 C 0.032 3.968 5 C -0.204 4.204 6 C 0.137 3.863 7 N -0.540 5.540 8 C 0.198 3.802 9 C -0.544 4.544 10 H 0.053 0.947 11 C 0.024 3.976 12 N -0.916 5.916 13 Si 0.937 3.063 14 H -0.269 1.269 15 H -0.282 1.282 16 H -0.279 1.279 17 C 0.064 3.936 18 C -0.095 4.095 19 C -0.094 4.094 20 C -0.140 4.140 21 C -0.142 4.142 22 S 0.124 5.876 23 H 0.091 0.909 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.190 0.810 27 H 0.035 0.965 28 H 0.105 0.895 29 H -0.003 1.003 30 H 0.020 0.980 31 H 0.262 0.738 32 H 0.024 0.976 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.040 0.960 41 H 0.067 0.933 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.325 8.113 -4.800 9.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.257 4.257 3 N -0.215 5.215 4 C -0.120 4.120 5 C -0.326 4.326 6 C 0.007 3.993 7 N -0.263 5.263 8 C 0.071 3.929 9 C -0.583 4.583 10 H 0.071 0.929 11 C -0.176 4.176 12 N -0.556 5.556 13 Si 0.764 3.236 14 H -0.193 1.193 15 H -0.208 1.208 16 H -0.204 1.204 17 C -0.064 4.064 18 C -0.134 4.134 19 C -0.114 4.114 20 C -0.197 4.197 21 C -0.199 4.199 22 S 0.379 5.621 23 H 0.109 0.891 24 H 0.118 0.882 25 H 0.112 0.888 26 H 0.207 0.793 27 H 0.054 0.946 28 H 0.123 0.877 29 H 0.016 0.984 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.624 7.902 -4.454 9.443 hybrid contribution 0.654 -1.401 -0.361 1.588 sum 3.279 6.501 -4.815 8.729 Atomic orbital electron populations 1.20534 0.83067 1.05108 1.04578 1.27688 1.03213 0.91384 1.03391 1.66328 1.05226 1.32308 1.17671 1.21842 0.91183 0.95925 1.03030 1.25880 0.99839 0.95988 1.10890 1.20312 0.88521 0.99380 0.91041 1.62531 1.04615 1.45362 1.13800 1.19498 0.93572 0.87013 0.92841 1.21817 1.23519 0.95085 1.17851 0.92894 1.25568 0.94830 1.01719 0.95481 1.70056 1.27247 1.29769 1.28535 0.85819 0.78181 0.80810 0.78827 1.19286 1.20824 1.20426 1.22053 0.87424 0.99099 0.97832 1.21452 0.95075 1.00786 0.96039 1.21070 0.93939 0.99572 0.96775 1.21817 0.99803 0.98747 0.99302 1.21792 1.01129 1.01718 0.95272 1.84839 0.98456 1.11970 1.66859 0.89078 0.88229 0.88815 0.79341 0.94648 0.87726 0.98448 0.96230 0.92880 0.95819 0.90081 0.91850 0.94969 0.92613 0.92195 0.91804 0.92671 0.94081 0.91415 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.70 10.46 71.23 0.75 -0.96 16 2 C 0.02 0.67 7.39 88.52 0.65 1.32 16 3 N -0.50 -17.61 10.54 -191.46 -2.02 -19.63 16 4 C 0.03 1.09 11.25 83.66 0.94 2.03 16 5 C -0.20 -7.68 5.32 24.64 0.13 -7.55 16 6 C 0.14 5.13 5.31 85.56 0.45 5.58 16 7 N -0.54 -22.32 4.66 -905.34 -4.22 -26.54 16 8 C 0.20 10.04 4.77 85.55 0.41 10.44 16 9 C -0.54 -28.79 7.34 25.60 0.19 -28.60 16 10 H 0.05 2.79 5.95 -2.91 -0.02 2.77 16 11 C 0.02 1.32 5.46 84.65 0.46 1.78 16 12 N -0.92 -52.89 13.29 21.45 0.28 -52.61 16 13 Si 0.94 43.04 29.54 68.60 2.03 45.06 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 17 C 0.06 2.31 4.51 86.30 0.39 2.70 16 18 C -0.10 -3.25 4.76 30.59 0.15 -3.10 16 19 C -0.09 -2.58 2.92 -10.79 -0.03 -2.61 16 20 C -0.14 -3.05 8.95 71.98 0.64 -2.40 16 21 C -0.14 -3.43 9.19 71.98 0.66 -2.77 16 22 S 0.12 4.76 21.73 -56.49 -1.23 3.53 16 23 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 24 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.19 5.48 8.06 -2.91 -0.02 5.45 16 27 H 0.04 1.47 6.58 -2.38 -0.02 1.45 16 28 H 0.10 3.18 7.86 -2.39 -0.02 3.16 16 29 H 0.00 -0.14 6.64 -2.38 -0.02 -0.16 16 30 H 0.02 1.08 5.93 -2.39 -0.01 1.06 16 31 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 32 H 0.02 0.98 6.16 -2.38 -0.01 0.96 16 33 H 0.08 2.46 6.32 -2.39 -0.02 2.44 16 34 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.03 1.31 6.68 -2.38 -0.02 1.29 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.05 1.21 6.61 -2.39 -0.02 1.19 16 40 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -62.39 345.22 1.63 -60.76 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.99 Total: 13.56 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: 5.79 Total: -24.14 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -5.95 Total: -98.78 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: 4.76 SS G_CDS: -1.23 Total: 3.53 kcal Total: -62.39 1.63 -60.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173545809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.237 kcal (2) G-P(sol) polarization free energy of solvation -62.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds