Wall clock time and date at job start Tue Mar 31 2020 06:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47063 * 2 1 4 4 C 1.52997 * 109.46854 * 173.66435 * 3 2 1 5 5 N 1.46897 * 109.47011 * 53.66631 * 3 2 1 6 6 C 1.46904 * 111.00086 * 59.99962 * 5 3 2 7 7 C 1.53001 * 109.46988 * 179.97438 * 6 5 3 8 8 C 1.53004 * 109.46928 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47147 * 179.97438 * 8 7 6 10 10 H 1.08005 * 120.00272 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00087 * 179.97438 * 9 8 7 12 12 N 1.31504 * 120.00024 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99760 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.47192 * 60.00381 * 13 11 9 15 15 H 1.48507 * 109.46879 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47149 * 299.99743 * 13 11 9 17 17 C 1.50697 * 109.47067 * 293.66837 * 3 2 1 18 18 N 1.29026 * 124.91504 * 171.30305 * 17 3 2 19 19 C 1.31785 * 117.11980 * 180.22263 * 18 17 3 20 20 C 1.50706 * 122.74665 * 179.75033 * 19 18 17 21 21 C 1.33634 * 114.50097 * 359.48277 * 19 18 17 22 22 S 1.70974 * 124.91437 * 350.99071 * 17 3 2 23 23 H 1.09003 * 109.46756 * 185.83120 * 1 2 3 24 24 H 1.09005 * 109.46910 * 305.83095 * 1 2 3 25 25 H 1.08997 * 109.46998 * 65.83515 * 1 2 3 26 26 H 1.08992 * 109.47296 * 239.99526 * 2 1 3 27 27 H 1.09002 * 109.46932 * 119.99501 * 2 1 3 28 28 H 1.09000 * 109.46788 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.47384 * 299.99878 * 4 3 2 30 30 H 1.09000 * 109.47554 * 60.00412 * 4 3 2 31 31 H 1.00898 * 111.00262 * 183.95551 * 5 3 2 32 32 H 1.08997 * 109.47252 * 299.99654 * 6 5 3 33 33 H 1.09001 * 109.47207 * 60.00051 * 6 5 3 34 34 H 1.09000 * 109.47356 * 300.00172 * 7 6 5 35 35 H 1.08997 * 109.47352 * 60.00402 * 7 6 5 36 36 H 1.08997 * 109.47303 * 299.99712 * 8 7 6 37 37 H 1.09001 * 109.47216 * 60.00147 * 8 7 6 38 38 H 0.97000 * 120.00249 * 179.97438 * 12 11 9 39 39 H 1.09003 * 109.46975 * 269.73570 * 20 19 18 40 40 H 1.08998 * 109.46811 * 149.74097 * 20 19 18 41 41 H 1.08993 * 109.46787 * 29.73639 * 20 19 18 42 42 H 1.08004 * 126.03590 * 180.26402 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5617 1.4454 0.1592 5 7 1.4296 2.1777 1.1157 6 6 1.7697 1.5578 2.4034 7 6 1.1180 2.3500 3.5386 8 6 1.4717 1.7040 4.8798 9 6 0.8303 2.4845 5.9980 10 1 0.2301 3.3541 5.7745 11 6 1.0090 2.0879 7.3063 12 7 1.7394 1.0288 7.5785 13 14 0.2133 3.0551 8.6924 14 1 -1.2610 3.0526 8.5149 15 1 0.5567 2.4282 9.9941 16 1 0.7123 4.4536 8.6701 17 6 1.6697 2.1063 -1.3013 18 7 1.8107 3.3634 -1.5555 19 6 1.4312 3.7818 -2.7461 20 6 1.5339 5.2229 -3.1747 21 6 0.9530 2.8225 -3.5442 22 16 1.0090 1.3011 -2.6571 23 1 -0.3633 -1.0224 0.1044 24 1 -0.3633 0.6016 0.8332 25 1 -0.3633 0.4207 -0.9376 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.9250 2.4731 0.1587 29 1 3.8295 0.9654 1.1004 30 1 4.0147 0.9000 -0.6687 31 1 1.7002 3.1496 1.0995 32 1 1.4045 0.5310 2.4201 33 1 2.8519 1.5608 2.5335 34 1 1.4835 3.3767 3.5218 35 1 0.0358 2.3474 3.4088 36 1 1.1058 0.6774 4.8963 37 1 2.5539 1.7061 5.0099 38 1 1.8654 0.7500 8.4990 39 1 0.6115 5.7446 -2.9193 40 1 1.6922 5.2711 -4.2521 41 1 2.3722 5.6953 -2.6627 42 1 0.5954 2.9562 -4.5545 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173938813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:18 Heat of formation + Delta-G solvation = 22.316087 kcal Electronic energy + Delta-G solvation = -20064.118737 eV Core-core repulsion = 17170.172096 eV Total energy + Delta-G solvation = -2893.946640 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.19060 -38.23161 -34.36293 -32.53415 -31.80348 -30.73217 -29.13027 -27.74745 -26.21476 -25.07061 -23.38296 -22.53307 -20.26004 -19.82507 -19.34879 -17.66039 -16.38442 -16.07229 -15.17516 -15.09566 -14.58099 -14.36990 -14.21251 -13.91160 -13.53004 -13.22700 -13.13942 -12.69385 -12.53321 -12.47364 -12.26018 -11.95948 -11.64974 -11.59382 -11.28487 -11.15940 -10.98630 -10.81575 -10.74449 -10.52933 -10.39038 -9.70786 -9.64223 -9.43772 -9.27922 -9.03675 -8.72376 -8.30827 -8.11346 -5.96360 -3.98132 0.63930 1.29076 1.70183 2.71840 3.36415 3.40224 3.43333 3.88323 4.39124 4.51871 4.59564 4.87802 4.95979 5.00549 5.11664 5.30173 5.39517 5.41107 5.47941 5.51132 5.57324 5.60703 5.72718 5.81168 5.85763 5.91377 6.02537 6.08319 6.15098 6.23854 6.38523 6.53687 6.76097 6.82285 7.17655 7.32470 7.66010 7.72007 7.72226 7.87636 8.04319 8.47952 9.08879 9.65680 11.15078 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.026992 B = 0.003332 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.087499 B = 8401.889530 C = 8869.069289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C 0.189 3.811 4 C -0.176 4.176 5 N -0.669 5.669 6 C 0.055 3.945 7 C -0.106 4.106 8 C 0.024 3.976 9 C -0.519 4.519 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.083 3.917 18 N -0.469 5.469 19 C 0.070 3.930 20 C -0.078 4.078 21 C -0.285 4.285 22 S 0.132 5.868 23 H 0.052 0.948 24 H 0.081 0.919 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.349 0.651 32 H 0.072 0.928 33 H 0.030 0.970 34 H 0.045 0.955 35 H 0.055 0.945 36 H 0.016 0.984 37 H 0.013 0.987 38 H 0.260 0.740 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.681 0.262 -24.193 24.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C 0.094 3.906 4 C -0.236 4.236 5 N -0.301 5.301 6 C -0.074 4.074 7 C -0.144 4.144 8 C -0.014 4.014 9 C -0.557 4.557 10 H 0.072 0.928 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.719 3.281 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.196 4.196 18 N -0.183 5.183 19 C -0.062 4.062 20 C -0.138 4.138 21 C -0.424 4.424 22 S 0.388 5.612 23 H 0.071 0.929 24 H 0.100 0.900 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.168 0.832 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.032 0.968 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 0.075 -0.867 -23.939 23.955 hybrid contribution 0.579 1.663 0.576 1.853 sum 0.653 0.796 -23.363 23.386 Atomic orbital electron populations 1.21898 0.94356 1.01737 1.03216 1.21742 0.97868 0.93511 1.02715 1.19444 0.92622 0.93079 0.85439 1.22528 0.95074 1.03112 1.02884 1.60708 1.61444 1.06518 1.01441 1.22270 0.98059 0.99469 0.87557 1.21616 0.99859 0.98262 0.94675 1.19047 0.96642 0.95936 0.89757 1.21230 1.31003 1.12216 0.91260 0.92752 1.25016 0.95395 0.95160 0.98889 1.69949 1.39508 1.24875 1.19333 0.86667 0.79874 0.80209 0.81312 1.20231 1.21338 1.20277 1.26995 1.00362 0.92181 1.00097 1.66000 1.19657 1.13590 1.19085 1.20282 0.99108 0.98106 0.88724 1.20348 1.03327 0.89105 1.00991 1.26882 1.13360 0.96012 1.06115 1.83940 1.58624 1.11907 1.06723 0.92879 0.90018 0.92957 0.91809 0.89875 0.91677 0.90591 0.92318 0.83198 0.90988 0.95140 0.93646 0.92618 0.96599 0.96833 0.93013 0.90644 0.91013 0.90622 0.81060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.34 37.16 0.35 -1.52 16 2 C -0.12 -1.40 3.99 -26.73 -0.11 -1.51 16 3 C 0.19 2.44 0.63 -132.76 -0.08 2.36 16 4 C -0.18 -2.14 8.21 37.16 0.31 -1.84 16 5 N -0.67 -10.07 4.98 -101.14 -0.50 -10.57 16 6 C 0.05 0.92 4.70 -3.82 -0.02 0.91 16 7 C -0.11 -2.21 5.41 -26.73 -0.14 -2.35 16 8 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 9 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 10 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 13 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 C 0.08 1.07 5.70 -13.46 -0.08 0.99 16 18 N -0.47 -6.45 10.33 -8.06 -0.08 -6.53 16 19 C 0.07 0.81 6.74 -84.22 -0.57 0.25 16 20 C -0.08 -0.68 10.31 36.01 0.37 -0.31 16 21 C -0.28 -2.89 11.13 29.12 0.32 -2.57 16 22 S 0.13 1.39 19.28 -107.50 -2.07 -0.68 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.08 1.17 6.98 -51.93 -0.36 0.81 16 25 H 0.05 0.61 5.57 -51.17 -0.28 0.32 16 26 H 0.06 0.64 7.41 -51.93 -0.38 0.26 16 27 H 0.08 0.99 6.76 -51.93 -0.35 0.64 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.94 6.40 -51.93 -0.33 0.61 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.35 5.49 8.55 -39.29 -0.34 5.15 16 32 H 0.07 1.21 6.30 -51.93 -0.33 0.88 16 33 H 0.03 0.51 6.30 -51.93 -0.33 0.19 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.17 1.26 8.06 -52.48 -0.42 0.83 16 LS Contribution 344.23 15.07 5.19 5.19 Total: -1.00 -30.85 344.23 -8.85 -39.71 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.90 Total: 1.23 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -0.20 Total: -18.81 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.15 Total: -43.56 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.07 Total: -0.68 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.85 -8.85 -39.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173938813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.022 kcal (2) G-P(sol) polarization free energy of solvation -30.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds