Wall clock time and date at job start Tue Mar 31 2020 06:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47063 * 2 1 4 4 C 1.52997 * 109.46854 * 173.66435 * 3 2 1 5 5 N 1.46897 * 109.47011 * 53.66631 * 3 2 1 6 6 C 1.46904 * 111.00086 * 59.99962 * 5 3 2 7 7 C 1.53001 * 109.46988 * 179.97438 * 6 5 3 8 8 C 1.53004 * 109.46928 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47147 * 179.97438 * 8 7 6 10 10 H 1.08005 * 120.00272 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00087 * 179.97438 * 9 8 7 12 12 N 1.31504 * 120.00024 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99760 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.47192 * 60.00381 * 13 11 9 15 15 H 1.48507 * 109.46879 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47149 * 299.99743 * 13 11 9 17 17 C 1.50697 * 109.47067 * 293.66837 * 3 2 1 18 18 N 1.29026 * 124.91504 * 171.30305 * 17 3 2 19 19 C 1.31785 * 117.11980 * 180.22263 * 18 17 3 20 20 C 1.50706 * 122.74665 * 179.75033 * 19 18 17 21 21 C 1.33634 * 114.50097 * 359.48277 * 19 18 17 22 22 S 1.70974 * 124.91437 * 350.99071 * 17 3 2 23 23 H 1.09003 * 109.46756 * 185.83120 * 1 2 3 24 24 H 1.09005 * 109.46910 * 305.83095 * 1 2 3 25 25 H 1.08997 * 109.46998 * 65.83515 * 1 2 3 26 26 H 1.08992 * 109.47296 * 239.99526 * 2 1 3 27 27 H 1.09002 * 109.46932 * 119.99501 * 2 1 3 28 28 H 1.09000 * 109.46788 * 179.97438 * 4 3 2 29 29 H 1.08999 * 109.47384 * 299.99878 * 4 3 2 30 30 H 1.09000 * 109.47554 * 60.00412 * 4 3 2 31 31 H 1.00898 * 111.00262 * 183.95551 * 5 3 2 32 32 H 1.08997 * 109.47252 * 299.99654 * 6 5 3 33 33 H 1.09001 * 109.47207 * 60.00051 * 6 5 3 34 34 H 1.09000 * 109.47356 * 300.00172 * 7 6 5 35 35 H 1.08997 * 109.47352 * 60.00402 * 7 6 5 36 36 H 1.08997 * 109.47303 * 299.99712 * 8 7 6 37 37 H 1.09001 * 109.47216 * 60.00147 * 8 7 6 38 38 H 0.97000 * 120.00249 * 179.97438 * 12 11 9 39 39 H 1.09003 * 109.46975 * 269.73570 * 20 19 18 40 40 H 1.08998 * 109.46811 * 149.74097 * 20 19 18 41 41 H 1.08993 * 109.46787 * 29.73639 * 20 19 18 42 42 H 1.08004 * 126.03590 * 180.26402 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5617 1.4454 0.1592 5 7 1.4296 2.1777 1.1157 6 6 1.7697 1.5578 2.4034 7 6 1.1180 2.3500 3.5386 8 6 1.4717 1.7040 4.8798 9 6 0.8303 2.4845 5.9980 10 1 0.2301 3.3541 5.7745 11 6 1.0090 2.0879 7.3063 12 7 1.7394 1.0288 7.5785 13 14 0.2133 3.0551 8.6924 14 1 -1.2610 3.0526 8.5149 15 1 0.5567 2.4282 9.9941 16 1 0.7123 4.4536 8.6701 17 6 1.6697 2.1063 -1.3013 18 7 1.8107 3.3634 -1.5555 19 6 1.4312 3.7818 -2.7461 20 6 1.5339 5.2229 -3.1747 21 6 0.9530 2.8225 -3.5442 22 16 1.0090 1.3011 -2.6571 23 1 -0.3633 -1.0224 0.1044 24 1 -0.3633 0.6016 0.8332 25 1 -0.3633 0.4207 -0.9376 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 3.9250 2.4731 0.1587 29 1 3.8295 0.9654 1.1004 30 1 4.0147 0.9000 -0.6687 31 1 1.7002 3.1496 1.0995 32 1 1.4045 0.5310 2.4201 33 1 2.8519 1.5608 2.5335 34 1 1.4835 3.3767 3.5218 35 1 0.0358 2.3474 3.4088 36 1 1.1058 0.6774 4.8963 37 1 2.5539 1.7061 5.0099 38 1 1.8654 0.7500 8.4990 39 1 0.6115 5.7446 -2.9193 40 1 1.6922 5.2711 -4.2521 41 1 2.3722 5.6953 -2.6627 42 1 0.5954 2.9562 -4.5545 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173938813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:17 Heat of formation + Delta-G solvation = 3.529318 kcal Electronic energy + Delta-G solvation = -20064.933392 eV Core-core repulsion = 17170.172096 eV Total energy + Delta-G solvation = -2894.761296 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.10175 -39.29544 -36.14703 -34.32404 -32.64470 -32.16558 -30.40624 -28.49245 -27.86179 -26.27675 -24.38176 -24.19737 -21.95861 -20.81417 -20.30628 -18.62307 -18.40602 -17.23587 -16.59481 -16.30388 -16.06901 -15.65729 -15.22147 -14.87549 -14.68008 -14.43939 -14.21260 -14.05362 -13.71054 -13.51656 -13.39623 -13.20047 -13.13414 -12.87622 -12.64220 -12.48922 -12.40780 -12.25182 -12.07351 -11.88845 -11.66313 -11.46570 -11.37524 -11.13512 -10.55365 -10.53684 -10.27007 -9.58412 -9.29850 -8.19172 -6.29809 -0.21883 0.45512 0.86359 1.40021 1.43132 1.51017 1.84747 2.41649 3.01711 3.13842 3.23184 3.64043 3.96629 4.01889 4.24956 4.30662 4.35430 4.40328 4.42127 4.51397 4.64196 4.67210 4.74603 4.78297 4.83885 4.86539 4.96390 4.99713 5.10482 5.15344 5.16298 5.23010 5.26406 5.41157 5.50880 5.57347 5.77401 5.87496 6.03771 6.28750 6.39406 6.86318 6.86905 7.39094 8.92444 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.026992 B = 0.003332 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.087499 B = 8401.889530 C = 8869.069289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C 0.189 3.811 4 C -0.171 4.171 5 N -0.669 5.669 6 C 0.072 3.928 7 C -0.091 4.091 8 C 0.029 3.971 9 C -0.545 4.545 10 H 0.056 0.944 11 C 0.001 3.999 12 N -0.932 5.932 13 Si 0.963 3.037 14 H -0.267 1.267 15 H -0.281 1.281 16 H -0.268 1.268 17 C 0.054 3.946 18 N -0.495 5.495 19 C 0.043 3.957 20 C -0.075 4.075 21 C -0.276 4.276 22 S 0.165 5.835 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.344 0.656 32 H 0.074 0.926 33 H 0.030 0.970 34 H 0.043 0.957 35 H 0.050 0.950 36 H -0.005 1.005 37 H -0.009 1.009 38 H 0.264 0.736 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.010 0.538 -25.806 25.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C 0.094 3.906 4 C -0.231 4.231 5 N -0.301 5.301 6 C -0.057 4.057 7 C -0.130 4.130 8 C -0.009 4.009 9 C -0.583 4.583 10 H 0.074 0.926 11 C -0.197 4.197 12 N -0.572 5.572 13 Si 0.788 3.212 14 H -0.192 1.192 15 H -0.207 1.207 16 H -0.193 1.193 17 C -0.224 4.224 18 N -0.210 5.210 19 C -0.089 4.089 20 C -0.135 4.135 21 C -0.415 4.415 22 S 0.422 5.578 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.162 0.838 32 H 0.092 0.908 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.013 0.987 37 H 0.010 0.990 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.617 -0.590 -25.568 25.582 hybrid contribution 0.786 1.558 0.982 2.003 sum 0.169 0.969 -24.586 24.606 Atomic orbital electron populations 1.21852 0.94608 1.02079 1.02359 1.21765 0.97600 0.92839 1.03549 1.19491 0.92823 0.93408 0.84859 1.22466 0.94824 1.02573 1.03260 1.60626 1.61943 1.06326 1.01181 1.21942 0.97495 0.98825 0.87458 1.21359 0.99731 0.98221 0.93644 1.18930 0.94846 0.94957 0.92129 1.21675 1.31408 1.12678 0.92544 0.92551 1.25950 0.95838 0.96163 1.01739 1.70076 1.40648 1.26387 1.20133 0.85532 0.79128 0.78841 0.77745 1.19230 1.20658 1.19303 1.26907 1.01983 0.92626 1.00886 1.66003 1.20243 1.14309 1.20480 1.20734 0.99935 0.99682 0.88507 1.20411 1.03134 0.87499 1.02433 1.27307 1.11726 0.95323 1.07095 1.83725 1.57386 1.11549 1.05189 0.91559 0.92582 0.92450 0.89684 0.90306 0.92799 0.91114 0.90673 0.83764 0.90810 0.95157 0.93784 0.93135 0.98709 0.99028 0.92746 0.90330 0.88529 0.91479 0.78092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 9.34 71.98 0.67 -2.83 16 2 C -0.12 -2.65 3.99 30.60 0.12 -2.53 16 3 C 0.19 4.76 0.63 2.78 0.00 4.76 16 4 C -0.17 -4.09 8.21 71.98 0.59 -3.50 16 5 N -0.67 -20.27 4.98 -473.89 -2.36 -22.64 16 6 C 0.07 2.47 4.70 86.30 0.41 2.87 16 7 C -0.09 -3.91 5.41 30.60 0.17 -3.74 16 8 C 0.03 1.56 4.97 29.85 0.15 1.71 16 9 C -0.55 -31.88 9.11 25.60 0.23 -31.64 16 10 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 11 C 0.00 0.05 5.46 84.66 0.46 0.51 16 12 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 13 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 14 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 15 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 17 C 0.05 1.34 5.70 88.52 0.50 1.84 16 18 N -0.49 -13.24 10.33 -179.40 -1.85 -15.10 16 19 C 0.04 0.93 6.74 41.52 0.28 1.21 16 20 C -0.08 -1.19 10.31 71.24 0.73 -0.45 16 21 C -0.28 -4.86 11.13 66.77 0.74 -4.11 16 22 S 0.17 3.11 19.28 -56.49 -1.09 2.02 16 23 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.06 1.59 6.98 -2.38 -0.02 1.58 16 25 H 0.06 1.24 5.57 -2.87 -0.02 1.23 16 26 H 0.08 1.53 7.41 -2.39 -0.02 1.51 16 27 H 0.08 1.82 6.76 -2.39 -0.02 1.81 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.74 6.40 -2.39 -0.02 1.72 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.34 10.99 8.55 -89.70 -0.77 10.23 16 32 H 0.07 2.52 6.30 -2.39 -0.02 2.51 16 33 H 0.03 1.05 6.30 -2.39 -0.02 1.03 16 34 H 0.04 1.86 8.14 -2.39 -0.02 1.85 16 35 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 36 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 37 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 38 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.10 0.98 8.12 -2.39 -0.02 0.97 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.20 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -66.71 344.23 2.30 -64.41 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.23 Total: 17.21 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 5.06 Total: -35.91 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -3.93 Total: -94.84 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -1.09 Total: 2.02 kcal Total: -66.71 2.30 -64.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173938813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.942 kcal (2) G-P(sol) polarization free energy of solvation -66.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds