Wall clock time and date at job start Tue Mar 31 2020 06:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31774 * 122.74945 * 2 1 4 4 C 1.29031 * 117.12862 * 180.02562 * 3 2 1 5 5 C 1.50697 * 124.91823 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.47066 * 90.00063 * 5 4 3 7 7 C 1.46901 * 110.99870 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46916 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.46923 * 299.99733 * 8 7 6 10 10 C 1.52999 * 109.46998 * 59.99872 * 8 7 6 11 11 C 1.52996 * 109.46700 * 179.97438 * 8 7 6 12 12 C 1.50701 * 109.46820 * 179.97438 * 11 8 7 13 13 H 1.08000 * 120.00070 * 0.02562 * 12 11 8 14 14 C 1.37878 * 120.00019 * 179.97438 * 12 11 8 15 15 N 1.31518 * 119.99993 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 120.00130 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47108 * 89.99504 * 16 14 12 18 18 H 1.48498 * 109.47097 * 209.99712 * 16 14 12 19 19 H 1.48499 * 109.46508 * 329.99366 * 16 14 12 20 20 S 1.70978 * 110.16257 * 0.22643 * 4 3 2 21 21 C 1.33635 * 122.74910 * 180.02562 * 2 1 3 22 22 C 1.50699 * 126.04247 * 359.97438 * 21 2 1 23 23 H 1.09001 * 109.46948 * 89.98186 * 1 2 3 24 24 H 1.08997 * 109.47007 * 209.97936 * 1 2 3 25 25 H 1.08989 * 109.47366 * 329.97882 * 1 2 3 26 26 H 1.09001 * 109.47558 * 330.00227 * 5 4 3 27 27 H 1.08998 * 109.47216 * 209.99889 * 5 4 3 28 28 H 1.00901 * 110.99869 * 56.04737 * 6 5 4 29 29 H 1.09004 * 109.47031 * 299.99620 * 7 6 5 30 30 H 1.08995 * 109.47111 * 59.99900 * 7 6 5 31 31 H 1.09002 * 109.47301 * 60.00027 * 9 8 7 32 32 H 1.09001 * 109.47017 * 180.02562 * 9 8 7 33 33 H 1.09005 * 109.47249 * 300.00302 * 9 8 7 34 34 H 1.09001 * 109.46999 * 60.00126 * 10 8 7 35 35 H 1.09001 * 109.46478 * 179.97438 * 10 8 7 36 36 H 1.08993 * 109.47197 * 299.99817 * 10 8 7 37 37 H 1.08993 * 109.47740 * 299.99810 * 11 8 7 38 38 H 1.09005 * 109.47573 * 59.99976 * 11 8 7 39 39 H 0.96999 * 120.00009 * 180.02562 * 15 14 12 40 40 H 1.09003 * 109.47054 * 89.99652 * 22 21 2 41 41 H 1.08992 * 109.47473 * 209.99890 * 22 21 2 42 42 H 1.08999 * 109.46796 * 330.00224 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9819 -0.0005 5 6 4.4835 2.1271 -0.0012 6 7 4.8023 2.4995 1.3837 7 6 5.7564 3.6159 1.4222 8 6 6.0638 3.9740 2.8777 9 6 4.7710 4.3832 3.5862 10 6 6.6704 2.7600 3.5842 11 6 7.0579 5.1363 2.9177 12 6 7.3603 5.4894 4.3513 13 1 6.8907 4.9394 5.1535 14 6 8.2372 6.5138 4.6387 15 7 8.5007 6.8222 5.8898 16 14 9.0500 7.4645 3.2512 17 1 8.2016 8.6267 2.8842 18 1 10.3830 7.9453 3.6951 19 1 9.2114 6.5772 2.0715 20 16 3.9333 -0.6731 -0.0074 21 6 2.2300 -1.1239 -0.0005 22 6 1.6848 -2.5289 -0.0006 23 1 -0.3633 0.0003 -1.0277 24 1 -0.3633 -0.8901 0.5135 25 1 -0.3633 0.8897 0.5141 26 1 4.0431 2.9817 -0.5149 27 1 5.3958 1.8247 -0.5153 28 1 5.1523 1.7064 1.8999 29 1 6.6776 3.3242 0.9178 30 1 5.3244 4.4806 0.9184 31 1 4.0631 3.5549 3.5575 32 1 4.9901 4.6387 4.6229 33 1 4.3388 5.2481 3.0827 34 1 7.5915 2.4685 3.0794 35 1 6.8899 3.0153 4.6210 36 1 5.9626 1.9318 3.5556 37 1 7.9788 4.8444 2.4131 38 1 6.6262 6.0013 2.4142 39 1 9.1174 7.5432 6.0920 40 1 1.5529 -2.8673 -1.0283 41 1 2.3832 -3.1897 0.5128 42 1 0.7238 -2.5457 0.5136 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174434089.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:24 Heat of formation + Delta-G solvation = 22.445455 kcal Electronic energy + Delta-G solvation = -19708.997897 eV Core-core repulsion = 16815.056867 eV Total energy + Delta-G solvation = -2893.941031 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.08604 -37.83883 -35.02904 -33.13875 -32.07378 -30.03017 -28.34405 -27.26041 -26.36544 -25.28419 -24.53165 -22.48078 -21.72924 -19.10268 -18.21447 -17.72893 -16.78574 -15.74691 -15.49739 -14.97823 -14.65294 -14.16780 -13.93138 -13.62589 -13.41710 -13.32749 -13.15039 -13.02552 -12.61561 -12.46254 -12.36668 -12.20730 -11.97341 -11.86069 -11.28379 -11.06338 -10.94910 -10.84335 -10.49250 -10.37269 -9.79156 -9.71440 -9.67647 -9.35936 -9.31081 -8.90534 -8.78227 -8.48491 -8.25051 -5.98693 -3.94887 0.52876 1.17014 1.57912 2.63390 3.33412 3.40918 3.43877 3.87506 4.44584 4.49393 4.65767 4.79389 4.83212 5.09384 5.14519 5.18704 5.34258 5.37077 5.44363 5.52872 5.57925 5.61641 5.65535 5.76381 5.86897 6.10428 6.12322 6.23124 6.40662 6.60993 6.68156 6.81815 7.04647 7.10802 7.18127 7.25231 7.33295 7.42941 7.53549 7.67860 7.86346 8.61120 9.07345 9.64313 11.14449 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.036933 B = 0.003083 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.954386 B = 9079.130699 C = 9121.582117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.061 3.939 3 N -0.453 5.453 4 C 0.064 3.936 5 C 0.133 3.867 6 N -0.676 5.676 7 C 0.068 3.932 8 C -0.048 4.048 9 C -0.118 4.118 10 C -0.131 4.131 11 C -0.004 4.004 12 C -0.507 4.507 13 H 0.078 0.922 14 C 0.064 3.936 15 N -0.906 5.906 16 Si 0.876 3.124 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.267 1.267 20 S 0.106 5.894 21 C -0.231 4.231 22 C -0.072 4.072 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.050 0.950 28 H 0.341 0.659 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.034 0.966 37 H 0.013 0.987 38 H 0.011 0.989 39 H 0.261 0.739 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.439 -18.039 -14.453 26.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.071 4.071 3 N -0.167 5.167 4 C -0.215 4.215 5 C 0.001 3.999 6 N -0.309 5.309 7 C -0.060 4.060 8 C -0.049 4.049 9 C -0.175 4.175 10 C -0.189 4.189 11 C -0.042 4.042 12 C -0.545 4.545 13 H 0.096 0.904 14 C -0.136 4.136 15 N -0.546 5.546 16 Si 0.704 3.296 17 H -0.204 1.204 18 H -0.216 1.216 19 H -0.192 1.192 20 S 0.362 5.638 21 C -0.352 4.352 22 C -0.132 4.132 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.119 0.881 27 H 0.067 0.933 28 H 0.160 0.840 29 H 0.045 0.955 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.031 0.969 38 H 0.029 0.971 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.128 -17.507 -14.292 25.648 hybrid contribution 0.550 0.263 -0.916 1.100 sum -11.578 -17.243 -15.208 25.742 Atomic orbital electron populations 1.20355 0.87256 1.03359 1.02705 1.20215 0.98182 0.86244 1.02411 1.66093 1.04531 1.31201 1.14891 1.26865 0.94140 0.97313 1.03151 1.20485 0.93522 0.93457 0.92485 1.60509 1.48574 1.11536 1.10312 1.22195 0.92132 0.92790 0.98904 1.20425 0.96654 0.96508 0.91285 1.21618 0.95519 0.99520 1.00882 1.21790 0.98452 0.96093 1.02534 1.19629 0.93602 0.92766 0.98186 1.21135 1.25481 1.16750 0.91108 0.90413 1.25020 0.96455 0.96995 0.95134 1.69911 1.36356 1.30642 1.17645 0.86843 0.78909 0.80616 0.83269 1.20424 1.21604 1.19171 1.83965 1.07121 1.03729 1.68974 1.25656 0.94978 1.00936 1.13677 1.20222 1.01141 0.89105 1.02689 0.90807 0.90810 0.90477 0.88079 0.93255 0.83971 0.95496 0.91092 0.93681 0.92103 0.94122 0.94057 0.91036 0.94669 0.96889 0.97067 0.92894 0.90731 0.91198 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.06 36.01 0.36 -0.29 16 2 C 0.06 0.71 6.74 -84.23 -0.57 0.15 16 3 N -0.45 -6.34 10.53 -8.06 -0.08 -6.42 16 4 C 0.06 0.82 6.90 -13.46 -0.09 0.73 16 5 C 0.13 1.66 6.26 -4.97 -0.03 1.62 16 6 N -0.68 -9.74 5.70 -115.05 -0.66 -10.40 16 7 C 0.07 1.10 4.65 -3.82 -0.02 1.08 16 8 C -0.05 -0.93 0.60 -154.51 -0.09 -1.02 16 9 C -0.12 -2.32 8.06 37.16 0.30 -2.02 16 10 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 11 C 0.00 -0.09 3.11 -27.88 -0.09 -0.18 16 12 C -0.51 -13.99 8.20 -34.44 -0.28 -14.27 16 13 H 0.08 2.29 5.92 -52.49 -0.31 1.98 16 14 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 15 N -0.91 -27.85 13.96 55.43 0.77 -27.08 16 16 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 20 S 0.11 1.12 23.18 -107.50 -2.49 -1.37 16 21 C -0.23 -2.35 6.59 -35.92 -0.24 -2.58 16 22 C -0.07 -0.48 10.10 36.01 0.36 -0.11 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.47 6.72 -51.93 -0.35 0.12 16 25 H 0.08 0.70 8.14 -51.94 -0.42 0.28 16 26 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.34 4.77 6.76 -39.29 -0.27 4.50 16 29 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.04 0.82 7.60 -51.93 -0.39 0.42 16 32 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 1.49 6.62 -51.93 -0.34 1.14 16 36 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 37 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 38 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.43 6.76 -51.93 -0.35 0.08 16 LS Contribution 344.30 15.07 5.19 5.19 Total: -1.00 -31.29 344.30 -8.99 -40.27 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.86 Total: -0.03 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -0.19 Total: -17.26 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.03 Total: -43.90 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.49 Total: -1.37 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.29 -8.99 -40.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174434089.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.718 kcal (2) G-P(sol) polarization free energy of solvation -31.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds