Wall clock time and date at job start Tue Mar 31 2020 06:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.31774 * 122.74945 * 2 1 4 4 C 1.29031 * 117.12862 * 180.02562 * 3 2 1 5 5 C 1.50697 * 124.91823 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.47066 * 90.00063 * 5 4 3 7 7 C 1.46901 * 110.99870 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46916 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.46923 * 299.99733 * 8 7 6 10 10 C 1.52999 * 109.46998 * 59.99872 * 8 7 6 11 11 C 1.52996 * 109.46700 * 179.97438 * 8 7 6 12 12 C 1.50701 * 109.46820 * 179.97438 * 11 8 7 13 13 H 1.08000 * 120.00070 * 0.02562 * 12 11 8 14 14 C 1.37878 * 120.00019 * 179.97438 * 12 11 8 15 15 N 1.31518 * 119.99993 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 120.00130 * 0.02562 * 14 12 11 17 17 H 1.48493 * 109.47108 * 89.99504 * 16 14 12 18 18 H 1.48498 * 109.47097 * 209.99712 * 16 14 12 19 19 H 1.48499 * 109.46508 * 329.99366 * 16 14 12 20 20 S 1.70978 * 110.16257 * 0.22643 * 4 3 2 21 21 C 1.33635 * 122.74910 * 180.02562 * 2 1 3 22 22 C 1.50699 * 126.04247 * 359.97438 * 21 2 1 23 23 H 1.09001 * 109.46948 * 89.98186 * 1 2 3 24 24 H 1.08997 * 109.47007 * 209.97936 * 1 2 3 25 25 H 1.08989 * 109.47366 * 329.97882 * 1 2 3 26 26 H 1.09001 * 109.47558 * 330.00227 * 5 4 3 27 27 H 1.08998 * 109.47216 * 209.99889 * 5 4 3 28 28 H 1.00901 * 110.99869 * 56.04737 * 6 5 4 29 29 H 1.09004 * 109.47031 * 299.99620 * 7 6 5 30 30 H 1.08995 * 109.47111 * 59.99900 * 7 6 5 31 31 H 1.09002 * 109.47301 * 60.00027 * 9 8 7 32 32 H 1.09001 * 109.47017 * 180.02562 * 9 8 7 33 33 H 1.09005 * 109.47249 * 300.00302 * 9 8 7 34 34 H 1.09001 * 109.46999 * 60.00126 * 10 8 7 35 35 H 1.09001 * 109.46478 * 179.97438 * 10 8 7 36 36 H 1.08993 * 109.47197 * 299.99817 * 10 8 7 37 37 H 1.08993 * 109.47740 * 299.99810 * 11 8 7 38 38 H 1.09005 * 109.47573 * 59.99976 * 11 8 7 39 39 H 0.96999 * 120.00009 * 180.02562 * 15 14 12 40 40 H 1.09003 * 109.47054 * 89.99652 * 22 21 2 41 41 H 1.08992 * 109.47473 * 209.99890 * 22 21 2 42 42 H 1.08999 * 109.46796 * 330.00224 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1083 0.0000 4 6 3.5040 0.9819 -0.0005 5 6 4.4835 2.1271 -0.0012 6 7 4.8023 2.4995 1.3837 7 6 5.7564 3.6159 1.4222 8 6 6.0638 3.9740 2.8777 9 6 4.7710 4.3832 3.5862 10 6 6.6704 2.7600 3.5842 11 6 7.0579 5.1363 2.9177 12 6 7.3603 5.4894 4.3513 13 1 6.8907 4.9394 5.1535 14 6 8.2372 6.5138 4.6387 15 7 8.5007 6.8222 5.8898 16 14 9.0500 7.4645 3.2512 17 1 8.2016 8.6267 2.8842 18 1 10.3830 7.9453 3.6951 19 1 9.2114 6.5772 2.0715 20 16 3.9333 -0.6731 -0.0074 21 6 2.2300 -1.1239 -0.0005 22 6 1.6848 -2.5289 -0.0006 23 1 -0.3633 0.0003 -1.0277 24 1 -0.3633 -0.8901 0.5135 25 1 -0.3633 0.8897 0.5141 26 1 4.0431 2.9817 -0.5149 27 1 5.3958 1.8247 -0.5153 28 1 5.1523 1.7064 1.8999 29 1 6.6776 3.3242 0.9178 30 1 5.3244 4.4806 0.9184 31 1 4.0631 3.5549 3.5575 32 1 4.9901 4.6387 4.6229 33 1 4.3388 5.2481 3.0827 34 1 7.5915 2.4685 3.0794 35 1 6.8899 3.0153 4.6210 36 1 5.9626 1.9318 3.5556 37 1 7.9788 4.8444 2.4131 38 1 6.6262 6.0013 2.4142 39 1 9.1174 7.5432 6.0920 40 1 1.5529 -2.8673 -1.0283 41 1 2.3832 -3.1897 0.5128 42 1 0.7238 -2.5457 0.5136 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174434089.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:24 Heat of formation + Delta-G solvation = 2.511022 kcal Electronic energy + Delta-G solvation = -19709.862319 eV Core-core repulsion = 16815.056867 eV Total energy + Delta-G solvation = -2894.805453 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.92113 -39.27056 -36.26657 -34.50703 -33.66510 -30.74065 -29.88864 -28.63817 -27.94053 -26.33906 -25.63578 -23.86244 -23.04950 -19.99126 -19.47420 -18.86771 -18.79048 -16.86777 -16.55154 -16.16721 -15.98245 -15.62748 -15.12655 -14.92947 -14.61125 -14.29876 -14.13976 -14.05497 -13.82642 -13.75176 -13.44322 -13.24280 -13.11052 -12.82310 -12.77753 -12.72361 -12.42652 -12.24871 -12.07798 -11.99757 -11.70841 -11.37656 -11.04688 -10.85458 -10.69092 -10.54464 -10.15757 -9.60971 -9.32688 -8.20727 -6.21200 -0.29468 0.38010 0.76068 1.37701 1.38521 1.49773 1.78285 2.40674 3.02207 3.14466 3.38231 3.94456 4.03610 4.08847 4.16860 4.17286 4.31175 4.33801 4.58747 4.61614 4.68462 4.72992 4.77957 4.80114 4.90494 4.94872 5.03261 5.05017 5.05701 5.07727 5.17281 5.36530 5.43699 5.44853 5.50720 5.60930 5.74163 5.80562 5.97860 6.36065 6.43254 6.84948 6.86323 7.41240 8.95646 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.036933 B = 0.003083 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.954386 B = 9079.130699 C = 9121.582117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.032 3.968 3 N -0.485 5.485 4 C 0.039 3.961 5 C 0.137 3.863 6 N -0.683 5.683 7 C 0.081 3.919 8 C -0.048 4.048 9 C -0.108 4.108 10 C -0.124 4.124 11 C -0.002 4.002 12 C -0.504 4.504 13 H 0.043 0.957 14 C 0.000 4.000 15 N -0.956 5.956 16 Si 0.942 3.058 17 H -0.272 1.272 18 H -0.289 1.289 19 H -0.246 1.246 20 S 0.131 5.869 21 C -0.225 4.225 22 C -0.074 4.074 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.344 0.656 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.028 0.972 33 H 0.037 0.963 34 H 0.050 0.950 35 H 0.036 0.964 36 H 0.061 0.939 37 H 0.018 0.982 38 H 0.013 0.987 39 H 0.262 0.738 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.869 -19.842 -17.011 29.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 N -0.200 5.200 4 C -0.240 4.240 5 C 0.005 3.995 6 N -0.317 5.317 7 C -0.048 4.048 8 C -0.049 4.049 9 C -0.166 4.166 10 C -0.182 4.182 11 C -0.040 4.040 12 C -0.542 4.542 13 H 0.061 0.939 14 C -0.196 4.196 15 N -0.598 5.598 16 Si 0.767 3.233 17 H -0.198 1.198 18 H -0.215 1.215 19 H -0.169 1.169 20 S 0.387 5.613 21 C -0.346 4.346 22 C -0.133 4.133 23 H 0.102 0.898 24 H 0.114 0.886 25 H 0.083 0.917 26 H 0.114 0.886 27 H 0.087 0.913 28 H 0.163 0.837 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.036 0.964 38 H 0.031 0.969 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.572 -19.327 -16.869 28.568 hybrid contribution 0.597 0.700 -0.063 0.922 sum -11.975 -18.627 -16.932 27.876 Atomic orbital electron populations 1.20428 0.85585 1.03845 1.03544 1.20666 0.99498 0.86208 1.03509 1.66097 1.05397 1.32940 1.15554 1.26854 0.94047 0.98519 1.04536 1.20456 0.94316 0.93569 0.91194 1.60398 1.47963 1.11306 1.11991 1.21921 0.93211 0.93652 0.96011 1.20353 0.95224 0.95386 0.93910 1.21505 0.96254 0.99956 0.98870 1.21695 0.99590 0.96619 1.00281 1.19590 0.94918 0.94464 0.95049 1.21435 1.24283 1.15739 0.92732 0.93908 1.25944 0.97552 0.98442 0.97651 1.70072 1.37795 1.31822 1.20139 0.85777 0.77661 0.79402 0.80499 1.19758 1.21540 1.16908 1.83800 1.07417 1.01901 1.68214 1.26164 0.94666 1.02230 1.11575 1.20399 1.01915 0.86986 1.04031 0.89764 0.88575 0.91718 0.88622 0.91262 0.83672 0.94191 0.91049 0.92214 0.95316 0.94343 0.93141 0.94480 0.92024 0.96380 0.96903 0.92919 0.89159 0.90343 0.88683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.06 71.24 0.72 -0.43 16 2 C 0.03 0.70 6.74 41.52 0.28 0.98 16 3 N -0.48 -13.07 10.53 -179.40 -1.89 -14.96 16 4 C 0.04 0.93 6.90 88.52 0.61 1.54 16 5 C 0.14 3.14 6.26 85.55 0.54 3.68 16 6 N -0.68 -18.29 5.70 -517.92 -2.95 -21.24 16 7 C 0.08 2.42 4.65 86.30 0.40 2.83 16 8 C -0.05 -1.82 0.60 -52.18 -0.03 -1.85 16 9 C -0.11 -4.27 8.06 71.98 0.58 -3.69 16 10 C -0.12 -4.48 7.89 71.98 0.57 -3.91 16 11 C 0.00 -0.11 3.11 29.85 0.09 -0.01 16 12 C -0.50 -28.44 8.20 25.60 0.21 -28.23 16 13 H 0.04 2.66 5.92 -2.91 -0.02 2.64 16 14 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 15 N -0.96 -60.60 13.96 21.45 0.30 -60.30 16 16 Si 0.94 44.72 27.47 68.60 1.88 46.60 16 17 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 19 H -0.25 -10.72 6.54 99.48 0.65 -10.06 16 20 S 0.13 2.48 23.18 -56.49 -1.31 1.17 16 21 C -0.23 -4.03 6.59 24.64 0.16 -3.87 16 22 C -0.07 -0.74 10.10 71.24 0.72 -0.02 16 23 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.10 0.97 6.72 -2.39 -0.02 0.96 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.34 8.80 6.76 -89.69 -0.61 8.19 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.06 2.14 7.60 -2.39 -0.02 2.13 16 32 H 0.03 1.28 6.62 -2.39 -0.02 1.26 16 33 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.04 1.57 6.62 -2.39 -0.02 1.55 16 36 H 0.06 1.86 6.57 -2.39 -0.02 1.85 16 37 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 38 H 0.01 0.58 7.57 -2.38 -0.02 0.56 16 39 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 40 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.09 0.68 6.76 -2.39 -0.02 0.66 16 Total: -1.00 -68.99 344.30 1.68 -67.31 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.34 Total: 13.97 kcal Atomic # 6 Polarization: -37.86 SS G_CDS: 5.31 Total: -32.55 kcal Atomic # 7 Polarization: -91.96 SS G_CDS: -4.54 Total: -96.50 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.60 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -1.31 Total: 1.17 kcal Total: -68.99 1.68 -67.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174434089.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.819 kcal (2) G-P(sol) polarization free energy of solvation -68.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds