Wall clock time and date at job start Tue Mar 31 2020 06:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.33635 * 126.03333 * 90.00297 * 3 2 1 5 5 N 1.31783 * 114.49905 * 180.02562 * 4 3 2 6 6 C 1.29032 * 117.12351 * 0.02562 * 5 4 3 7 7 C 1.50701 * 124.91709 * 180.02562 * 6 5 4 8 8 N 1.46903 * 109.46802 * 89.97140 * 7 6 5 9 9 C 1.46904 * 110.99437 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46748 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47185 * 299.99720 * 10 9 8 12 12 C 1.53006 * 109.46940 * 60.00272 * 10 9 8 13 13 C 1.53004 * 109.47017 * 179.97438 * 10 9 8 14 14 C 1.50696 * 109.47126 * 179.97438 * 13 10 9 15 15 H 1.07993 * 120.00094 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00085 * 179.97438 * 14 13 10 17 17 N 1.31520 * 119.99739 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00220 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46895 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47253 * 120.00144 * 18 16 14 21 21 H 1.48506 * 109.47231 * 240.00335 * 18 16 14 22 22 S 1.70978 * 110.16501 * 359.72332 * 6 5 4 23 23 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 28 28 H 1.08003 * 122.75189 * 359.97438 * 4 3 2 29 29 H 1.08997 * 109.47171 * 209.97442 * 7 6 5 30 30 H 1.09008 * 109.46970 * 329.97629 * 7 6 5 31 31 H 1.00897 * 111.00204 * 303.95275 * 8 7 6 32 32 H 1.08998 * 109.46953 * 299.99631 * 9 8 7 33 33 H 1.09000 * 109.47356 * 60.00025 * 9 8 7 34 34 H 1.08999 * 109.46779 * 60.00608 * 11 10 9 35 35 H 1.09001 * 109.46743 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.47215 * 300.00164 * 11 10 9 37 37 H 1.08994 * 109.47385 * 59.99595 * 12 10 9 38 38 H 1.08997 * 109.46718 * 179.97438 * 12 10 9 39 39 H 1.08999 * 109.46906 * 299.99619 * 12 10 9 40 40 H 1.09002 * 109.47139 * 300.00643 * 13 10 9 41 41 H 1.09000 * 109.46936 * 60.00109 * 13 10 9 42 42 H 0.97003 * 119.99949 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2944 2.1620 1.0807 5 7 2.7243 3.3796 0.8172 6 6 2.8389 3.7068 -0.4257 7 6 3.3128 5.0477 -0.9245 8 7 4.7725 5.0216 -1.0871 9 6 5.2712 6.3153 -1.5725 10 6 6.7917 6.2492 -1.7297 11 6 7.4310 5.9315 -0.3765 12 6 7.1534 5.1536 -2.7346 13 6 7.3111 7.5964 -2.2360 14 6 8.8088 7.5316 -2.3902 15 1 9.3372 6.6205 -2.1515 16 6 9.5042 8.6350 -2.8371 17 7 8.8605 9.7444 -3.1283 18 14 11.3606 8.5545 -3.0290 19 1 11.8403 7.2041 -2.6395 20 1 11.7239 8.8191 -4.4444 21 1 11.9933 9.5759 -2.1562 22 16 2.3834 2.3962 -1.4247 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 2.1638 1.7937 2.0875 29 1 2.8440 5.2646 -1.8843 30 1 3.0411 5.8198 -0.2046 31 1 5.2277 4.7591 -0.2257 32 1 4.8161 6.5414 -2.5368 33 1 5.0131 7.0959 -0.8569 34 1 7.0610 4.9716 -0.0164 35 1 8.5142 5.8840 -0.4887 36 1 7.1733 6.7121 0.3393 37 1 6.6979 5.3799 -3.6986 38 1 8.2366 5.1068 -2.8469 39 1 6.7833 4.1937 -2.3744 40 1 6.8555 7.8224 -3.2001 41 1 7.0534 8.3773 -1.5205 42 1 9.3498 10.5209 -3.4424 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174626670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:14 Heat of formation + Delta-G solvation = 16.481162 kcal Electronic energy + Delta-G solvation = -19515.748481 eV Core-core repulsion = 16621.548819 eV Total energy + Delta-G solvation = -2894.199662 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.85321 -37.68469 -35.11922 -34.01152 -32.20571 -29.67563 -27.38955 -26.69042 -26.31513 -24.97262 -23.74318 -22.78210 -22.06538 -19.38102 -18.37020 -17.73702 -16.24661 -15.78408 -15.28632 -15.20077 -14.61384 -14.40964 -14.31300 -14.00973 -13.70084 -13.13307 -12.91795 -12.77839 -12.39844 -12.16916 -11.97317 -11.90132 -11.89749 -11.65865 -11.09870 -10.98218 -10.87068 -10.74544 -10.48851 -10.27438 -10.12068 -9.71650 -9.66388 -9.32935 -9.08210 -8.90029 -8.79915 -8.30823 -8.19252 -5.95273 -3.95125 0.57686 1.24037 1.69223 2.70798 3.33420 3.41293 3.44928 3.99458 4.46956 4.50384 4.64214 4.66681 4.89935 4.93216 5.20844 5.29814 5.38675 5.40732 5.47860 5.53299 5.66970 5.70884 5.77174 5.79702 5.98721 6.06337 6.23730 6.32061 6.51142 6.66899 6.78888 6.84258 7.14040 7.21598 7.26476 7.34557 7.55320 7.67015 7.71644 7.86224 8.05165 8.49552 9.10393 9.67666 11.16427 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.045690 B = 0.002812 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.673392 B = 9955.130186 C =10042.279055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.044 4.044 3 C -0.232 4.232 4 C 0.035 3.965 5 N -0.474 5.474 6 C 0.057 3.943 7 C 0.131 3.869 8 N -0.680 5.680 9 C 0.070 3.930 10 C -0.057 4.057 11 C -0.130 4.130 12 C -0.117 4.117 13 C 0.033 3.967 14 C -0.505 4.505 15 H 0.060 0.940 16 C 0.054 3.946 17 N -0.897 5.897 18 Si 0.887 3.113 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.286 1.286 22 S 0.146 5.854 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.170 0.830 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.345 0.655 32 H 0.069 0.931 33 H 0.028 0.972 34 H 0.032 0.968 35 H 0.064 0.936 36 H 0.041 0.959 37 H 0.040 0.960 38 H 0.055 0.945 39 H 0.041 0.959 40 H 0.016 0.984 41 H 0.013 0.987 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.583 -17.509 5.516 24.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 C -0.354 4.354 4 C -0.116 4.116 5 N -0.189 5.189 6 C -0.221 4.221 7 C -0.002 4.002 8 N -0.314 5.314 9 C -0.059 4.059 10 C -0.058 4.058 11 C -0.187 4.187 12 C -0.174 4.174 13 C -0.004 4.004 14 C -0.544 4.544 15 H 0.078 0.922 16 C -0.147 4.147 17 N -0.537 5.537 18 Si 0.716 3.284 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.212 1.212 22 S 0.401 5.599 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.187 0.813 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.165 0.835 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.034 0.966 41 H 0.032 0.968 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.480 -17.334 4.140 24.274 hybrid contribution 0.862 0.421 1.594 1.861 sum -15.618 -16.913 5.734 23.725 Atomic orbital electron populations 1.21802 0.94299 1.02024 1.02465 1.19966 0.96046 0.89000 1.03415 1.26050 1.10983 1.02683 0.95668 1.21624 1.01307 0.88797 0.99917 1.66291 1.16018 1.17684 1.18891 1.26955 1.02654 1.01372 0.91143 1.20472 0.90901 0.88373 1.00420 1.60668 1.01687 1.32559 1.36487 1.22166 0.97142 0.87329 0.99223 1.20628 0.90643 0.99101 0.95381 1.21776 1.02029 0.98387 0.96519 1.21607 1.01157 0.96838 0.97790 1.19136 0.95815 0.89529 0.95957 1.21267 0.92286 0.97743 1.43057 0.92238 1.25021 0.98097 0.95668 0.95883 1.69980 1.35303 1.02469 1.45998 0.86607 0.86240 0.77965 0.77614 1.19785 1.21167 1.21202 1.84010 1.59139 1.05976 1.10751 0.92319 0.91931 0.92479 0.89863 0.90618 0.81264 0.89042 0.92286 0.83499 0.91223 0.95365 0.94871 0.91654 0.93994 0.94098 0.92628 0.93960 0.96597 0.96834 0.93236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.16 0.37 -0.51 16 2 C -0.04 -0.30 6.47 -27.88 -0.18 -0.48 16 3 C -0.23 -2.27 5.85 -35.92 -0.21 -2.48 16 4 C 0.04 0.39 11.25 -19.19 -0.22 0.17 16 5 N -0.47 -6.38 10.54 -11.86 -0.13 -6.51 16 6 C 0.06 0.72 6.90 -13.45 -0.09 0.63 16 7 C 0.13 1.68 6.26 -4.97 -0.03 1.65 16 8 N -0.68 -10.08 5.70 -115.05 -0.66 -10.73 16 9 C 0.07 1.19 4.65 -3.82 -0.02 1.17 16 10 C -0.06 -1.13 0.60 -154.50 -0.09 -1.23 16 11 C -0.13 -2.46 7.89 37.16 0.29 -2.16 16 12 C -0.12 -2.26 8.06 37.16 0.30 -1.96 16 13 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 14 C -0.51 -13.81 7.65 -34.44 -0.26 -14.07 16 15 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 16 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 17 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 18 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 S 0.15 1.58 23.18 -107.50 -2.49 -0.92 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.17 1.48 8.06 -52.48 -0.42 1.05 16 29 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 31 H 0.35 5.27 6.76 -39.29 -0.27 5.00 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 35 H 0.06 1.34 6.62 -51.93 -0.34 0.99 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 39 H 0.04 0.74 7.60 -51.93 -0.39 0.35 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 350.62 15.07 5.28 5.28 Total: -1.00 -30.02 350.62 -9.67 -39.69 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -7.04 Total: -0.21 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -0.35 Total: -17.14 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: -0.04 Total: -43.35 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.49 Total: -0.92 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.02 -9.67 -39.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174626670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.167 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds