Wall clock time and date at job start Tue Mar 31 2020 06:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.33635 * 126.03333 * 90.00297 * 3 2 1 5 5 N 1.31783 * 114.49905 * 180.02562 * 4 3 2 6 6 C 1.29032 * 117.12351 * 0.02562 * 5 4 3 7 7 C 1.50701 * 124.91709 * 180.02562 * 6 5 4 8 8 N 1.46903 * 109.46802 * 89.97140 * 7 6 5 9 9 C 1.46904 * 110.99437 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.46748 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47185 * 299.99720 * 10 9 8 12 12 C 1.53006 * 109.46940 * 60.00272 * 10 9 8 13 13 C 1.53004 * 109.47017 * 179.97438 * 10 9 8 14 14 C 1.50696 * 109.47126 * 179.97438 * 13 10 9 15 15 H 1.07993 * 120.00094 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00085 * 179.97438 * 14 13 10 17 17 N 1.31520 * 119.99739 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00220 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46895 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47253 * 120.00144 * 18 16 14 21 21 H 1.48506 * 109.47231 * 240.00335 * 18 16 14 22 22 S 1.70978 * 110.16501 * 359.72332 * 6 5 4 23 23 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 26 26 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 27 27 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 28 28 H 1.08003 * 122.75189 * 359.97438 * 4 3 2 29 29 H 1.08997 * 109.47171 * 209.97442 * 7 6 5 30 30 H 1.09008 * 109.46970 * 329.97629 * 7 6 5 31 31 H 1.00897 * 111.00204 * 303.95275 * 8 7 6 32 32 H 1.08998 * 109.46953 * 299.99631 * 9 8 7 33 33 H 1.09000 * 109.47356 * 60.00025 * 9 8 7 34 34 H 1.08999 * 109.46779 * 60.00608 * 11 10 9 35 35 H 1.09001 * 109.46743 * 179.97438 * 11 10 9 36 36 H 1.09000 * 109.47215 * 300.00164 * 11 10 9 37 37 H 1.08994 * 109.47385 * 59.99595 * 12 10 9 38 38 H 1.08997 * 109.46718 * 179.97438 * 12 10 9 39 39 H 1.08999 * 109.46906 * 299.99619 * 12 10 9 40 40 H 1.09002 * 109.47139 * 300.00643 * 13 10 9 41 41 H 1.09000 * 109.46936 * 60.00109 * 13 10 9 42 42 H 0.97003 * 119.99949 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2944 2.1620 1.0807 5 7 2.7243 3.3796 0.8172 6 6 2.8389 3.7068 -0.4257 7 6 3.3128 5.0477 -0.9245 8 7 4.7725 5.0216 -1.0871 9 6 5.2712 6.3153 -1.5725 10 6 6.7917 6.2492 -1.7297 11 6 7.4310 5.9315 -0.3765 12 6 7.1534 5.1536 -2.7346 13 6 7.3111 7.5964 -2.2360 14 6 8.8088 7.5316 -2.3902 15 1 9.3372 6.6205 -2.1515 16 6 9.5042 8.6350 -2.8371 17 7 8.8605 9.7444 -3.1283 18 14 11.3606 8.5545 -3.0290 19 1 11.8403 7.2041 -2.6395 20 1 11.7239 8.8191 -4.4444 21 1 11.9933 9.5759 -2.1562 22 16 2.3834 2.3962 -1.4247 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 2.1638 1.7937 2.0875 29 1 2.8440 5.2646 -1.8843 30 1 3.0411 5.8198 -0.2046 31 1 5.2277 4.7591 -0.2257 32 1 4.8161 6.5414 -2.5368 33 1 5.0131 7.0959 -0.8569 34 1 7.0610 4.9716 -0.0164 35 1 8.5142 5.8840 -0.4887 36 1 7.1733 6.7121 0.3393 37 1 6.6979 5.3799 -3.6986 38 1 8.2366 5.1068 -2.8469 39 1 6.7833 4.1937 -2.3744 40 1 6.8555 7.8224 -3.2001 41 1 7.0534 8.3773 -1.5205 42 1 9.3498 10.5209 -3.4424 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174626670.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:13 Heat of formation + Delta-G solvation = -1.102585 kcal Electronic energy + Delta-G solvation = -19516.510969 eV Core-core repulsion = 16621.548819 eV Total energy + Delta-G solvation = -2894.962150 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.72638 -39.18550 -36.25231 -35.03310 -34.12208 -30.68780 -28.99660 -27.98450 -27.89780 -26.36315 -24.88109 -23.87055 -23.33069 -20.26860 -19.58871 -18.96499 -18.32227 -16.93702 -16.59950 -16.19148 -16.11294 -15.53246 -15.20671 -14.99881 -14.92100 -14.54052 -14.19082 -14.10895 -13.87088 -13.40988 -13.27804 -13.13528 -12.81166 -12.67092 -12.56783 -12.49213 -12.34622 -12.24880 -12.14880 -11.88094 -11.70371 -11.38872 -10.88103 -10.79425 -10.56444 -10.49890 -10.16479 -9.76720 -9.39997 -8.13197 -6.19617 -0.27451 0.41706 0.84743 1.40440 1.41677 1.53638 1.83805 2.44413 3.05076 3.20905 3.47421 3.88833 3.97098 4.14013 4.17038 4.20416 4.38036 4.41401 4.44400 4.56311 4.60932 4.76246 4.78912 4.81025 4.95294 5.04936 5.07539 5.14765 5.19962 5.21942 5.25390 5.36745 5.52459 5.54555 5.59095 5.64199 5.86960 5.91935 5.95424 6.32588 6.37776 6.79438 6.95486 7.47458 8.99255 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.045690 B = 0.002812 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.673392 B = 9955.130186 C =10042.279055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C -0.218 4.218 4 C 0.014 3.986 5 N -0.497 5.497 6 C 0.032 3.968 7 C 0.133 3.867 8 N -0.675 5.675 9 C 0.082 3.918 10 C -0.053 4.053 11 C -0.123 4.123 12 C -0.107 4.107 13 C 0.039 3.961 14 C -0.512 4.512 15 H 0.065 0.935 16 C -0.005 4.005 17 N -0.937 5.937 18 Si 0.955 3.045 19 H -0.262 1.262 20 H -0.282 1.282 21 H -0.283 1.283 22 S 0.160 5.840 23 H 0.055 0.945 24 H 0.079 0.921 25 H 0.049 0.951 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.189 0.811 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.344 0.656 32 H 0.068 0.932 33 H 0.023 0.977 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.036 0.964 37 H 0.035 0.965 38 H 0.038 0.962 39 H 0.064 0.936 40 H -0.011 1.011 41 H -0.015 1.015 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.897 -19.992 5.956 26.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.086 4.086 3 C -0.339 4.339 4 C -0.137 4.137 5 N -0.212 5.212 6 C -0.245 4.245 7 C 0.002 3.998 8 N -0.308 5.308 9 C -0.047 4.047 10 C -0.054 4.054 11 C -0.180 4.180 12 C -0.164 4.164 13 C 0.002 3.998 14 C -0.550 4.550 15 H 0.083 0.917 16 C -0.202 4.202 17 N -0.579 5.579 18 Si 0.781 3.219 19 H -0.186 1.186 20 H -0.208 1.208 21 H -0.209 1.209 22 S 0.415 5.585 23 H 0.074 0.926 24 H 0.098 0.902 25 H 0.068 0.932 26 H 0.118 0.882 27 H 0.102 0.898 28 H 0.206 0.794 29 H 0.121 0.879 30 H 0.074 0.926 31 H 0.163 0.837 32 H 0.087 0.913 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.007 0.993 41 H 0.004 0.996 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.799 -19.833 4.586 26.393 hybrid contribution 0.866 1.119 1.472 2.042 sum -15.933 -18.713 6.058 25.313 Atomic orbital electron populations 1.21790 0.93483 1.03071 1.02020 1.20138 0.96624 0.87177 1.04623 1.26471 1.09086 1.03633 0.94743 1.21955 1.02060 0.88408 1.01234 1.66273 1.16437 1.19010 1.19505 1.26814 1.04280 1.01863 0.91580 1.20455 0.89399 0.88948 1.01046 1.60596 1.03104 1.30727 1.36418 1.21880 0.95029 0.88498 0.99302 1.20480 0.92691 0.96253 0.95957 1.21686 1.00812 0.99742 0.95770 1.21503 0.99977 0.97534 0.97420 1.19017 0.95067 0.91807 0.93955 1.21634 0.93489 0.97764 1.42090 0.91715 1.25908 1.03012 0.95416 0.95824 1.70113 1.37230 1.03259 1.47258 0.85537 0.80425 0.78384 0.77554 1.18574 1.20809 1.20890 1.83918 1.58554 1.05258 1.10780 0.92564 0.90180 0.93152 0.88204 0.89826 0.79417 0.87912 0.92575 0.83659 0.91307 0.95856 0.92066 0.93352 0.94437 0.94598 0.94292 0.91739 0.99290 0.99635 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.89 71.98 0.71 -0.64 16 2 C -0.05 -0.50 6.47 29.85 0.19 -0.30 16 3 C -0.22 -3.79 5.85 24.64 0.14 -3.64 16 4 C 0.01 0.28 11.25 83.66 0.94 1.22 16 5 N -0.50 -12.81 10.54 -191.44 -2.02 -14.82 16 6 C 0.03 0.77 6.90 88.52 0.61 1.38 16 7 C 0.13 3.30 6.26 85.56 0.54 3.84 16 8 N -0.68 -19.18 5.70 -517.90 -2.95 -22.13 16 9 C 0.08 2.76 4.65 86.30 0.40 3.16 16 10 C -0.05 -2.12 0.60 -52.18 -0.03 -2.15 16 11 C -0.12 -4.56 7.89 71.98 0.57 -3.99 16 12 C -0.11 -4.06 8.06 71.98 0.58 -3.48 16 13 C 0.04 2.02 4.04 29.85 0.12 2.14 16 14 C -0.51 -28.35 7.65 25.60 0.20 -28.15 16 15 H 0.06 3.46 5.68 -2.91 -0.02 3.44 16 16 C 0.00 -0.29 5.46 84.65 0.46 0.18 16 17 N -0.94 -57.32 13.29 21.45 0.28 -57.03 16 18 Si 0.96 44.70 29.54 68.60 2.03 46.72 16 19 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 S 0.16 3.18 23.18 -56.49 -1.31 1.87 16 23 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.19 2.90 8.06 -2.91 -0.02 2.88 16 29 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.34 9.96 6.76 -89.70 -0.61 9.35 16 32 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 1.92 6.57 -2.39 -0.02 1.90 16 35 H 0.05 1.94 6.62 -2.39 -0.02 1.93 16 36 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 37 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.04 1.58 6.62 -2.39 -0.02 1.57 16 39 H 0.06 2.15 7.60 -2.39 -0.02 2.13 16 40 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 41 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 42 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -64.76 350.62 1.85 -62.91 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.39 Total: 12.93 kcal Atomic # 6 Polarization: -35.87 SS G_CDS: 5.43 Total: -30.44 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -4.69 Total: -93.99 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -1.31 Total: 1.87 kcal Total: -64.76 1.85 -62.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174626670.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.806 kcal (2) G-P(sol) polarization free energy of solvation -64.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds