Wall clock time and date at job start Tue Mar 31 2020 06:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99941 * 2 1 4 4 H 1.48495 * 109.47237 * 239.99872 * 3 2 1 5 5 H 1.48497 * 109.47041 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46788 * 119.99767 * 3 2 1 7 7 C 1.37881 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00233 * 173.70247 * 7 2 1 9 9 C 1.50698 * 119.99912 * 353.71201 * 7 2 1 10 10 C 1.53001 * 115.55222 * 86.10940 * 9 7 2 11 11 O 1.45203 * 109.47231 * 65.10114 * 10 9 7 12 12 C 1.34228 * 117.00070 * 179.97438 * 11 10 9 13 13 O 1.20831 * 119.99820 * 0.02562 * 12 11 10 14 14 C 1.50694 * 120.00208 * 180.28047 * 12 11 10 15 15 O 1.42895 * 109.47458 * 179.72676 * 14 12 11 16 16 C 1.42904 * 114.00270 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47346 * 270.00150 * 16 15 14 18 18 C 1.53003 * 109.47125 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.47128 * 59.99999 * 18 17 16 20 20 C 1.52998 * 109.47118 * 300.00005 * 19 18 17 21 21 C 1.53001 * 109.47217 * 149.99960 * 16 15 14 22 22 C 1.52996 * 117.49935 * 231.78040 * 9 7 2 23 23 C 1.52995 * 117.49881 * 300.43823 * 9 7 2 24 24 H 0.96993 * 120.00139 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47159 * 305.10389 * 10 9 7 26 26 H 1.09001 * 109.47685 * 185.10857 * 10 9 7 27 27 H 1.09001 * 109.47198 * 299.72791 * 14 12 11 28 28 H 1.09008 * 109.47312 * 59.72351 * 14 12 11 29 29 H 1.09008 * 109.46859 * 30.00182 * 16 15 14 30 30 H 1.08994 * 109.47232 * 299.99901 * 17 16 15 31 31 H 1.09000 * 109.46719 * 59.99690 * 17 16 15 32 32 H 1.09000 * 109.47105 * 299.99746 * 18 17 16 33 33 H 1.08997 * 109.46736 * 180.02562 * 18 17 16 34 34 H 1.08997 * 109.46644 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.46636 * 60.00141 * 19 18 17 36 36 H 1.09000 * 109.46921 * 300.00135 * 20 19 18 37 37 H 1.08997 * 109.47121 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.46787 * 300.00175 * 21 16 15 39 39 H 1.08994 * 109.46946 * 60.00353 * 21 16 15 40 40 H 1.09006 * 117.50114 * 215.00762 * 22 9 7 41 41 H 1.09000 * 117.49823 * 0.02562 * 22 9 7 42 42 H 1.08997 * 117.49855 * 359.97438 * 23 9 7 43 43 H 1.09007 * 117.50203 * 144.97629 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0797 -1.1969 -0.1021 9 6 1.2579 -2.4952 0.1441 10 6 0.7194 -3.0940 -1.1568 11 8 1.8303 -3.4657 -2.0148 12 6 1.5266 -4.0104 -3.2034 13 8 0.3707 -4.1709 -3.5167 14 6 2.6272 -4.4271 -4.1447 15 8 2.0550 -4.9809 -5.3312 16 6 3.0184 -5.4097 -6.2957 17 6 3.3426 -4.2521 -7.2421 18 6 4.3746 -4.7110 -8.2744 19 6 3.8062 -5.8827 -9.0776 20 6 3.4820 -7.0402 -8.1311 21 6 2.4496 -6.5811 -7.0988 22 6 1.7340 -3.4673 1.2253 23 6 0.4253 -2.6957 1.4118 24 1 -0.4850 0.8400 0.0004 25 1 0.0978 -2.3574 -1.6660 26 1 0.1234 -3.9781 -0.9306 27 1 3.2317 -3.5581 -4.4042 28 1 3.2553 -5.1752 -3.6608 29 1 3.9276 -5.7269 -5.7848 30 1 2.4335 -3.9349 -7.7529 31 1 3.7479 -3.4176 -6.6699 32 1 5.2836 -5.0279 -7.7632 33 1 4.6058 -3.8862 -8.9483 34 1 4.5413 -6.2092 -9.8132 35 1 2.8972 -5.5656 -9.5887 36 1 4.3911 -7.3571 -7.6200 37 1 3.0768 -7.8747 -8.7033 38 1 2.2186 -7.4058 -6.4245 39 1 1.5405 -6.2639 -7.6096 40 1 1.6637 -4.5335 1.0099 41 1 2.5870 -3.1656 1.8331 42 1 0.4179 -1.8867 2.1423 43 1 -0.5064 -3.2539 1.3191 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174755216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:56 Heat of formation + Delta-G solvation = -130.130510 kcal Electronic energy + Delta-G solvation = -22196.717018 eV Core-core repulsion = 18821.114175 eV Total energy + Delta-G solvation = -3375.602843 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.91416 -39.12393 -36.96451 -36.30752 -35.14436 -31.96790 -31.05007 -30.36033 -28.33586 -26.32973 -25.13251 -22.86263 -22.41636 -21.23772 -20.59656 -19.99777 -19.26641 -17.38914 -16.63630 -16.39251 -16.18973 -15.72733 -15.13055 -14.90158 -14.60004 -14.46416 -14.13708 -13.78049 -13.33237 -13.15638 -12.79188 -12.54796 -12.42365 -11.99324 -11.88800 -11.61509 -11.38276 -11.25825 -10.97855 -10.87975 -10.85101 -10.74631 -10.56386 -10.52725 -10.29346 -9.93632 -9.86074 -9.57430 -9.53709 -8.84026 -8.47434 -8.22194 -6.07609 -4.13345 2.73950 2.78354 3.29725 3.34780 3.36928 3.99685 4.38302 4.46694 4.48490 4.71589 4.91166 4.94049 5.07000 5.11391 5.18376 5.21308 5.23025 5.24101 5.28742 5.36483 5.47468 5.54693 5.73936 5.75977 5.85169 5.92780 5.95732 5.97988 6.07324 6.15265 6.23460 6.32523 6.51997 6.62983 6.72038 7.02423 7.06273 7.24473 7.35363 7.46718 7.85316 8.35196 8.45651 8.88149 9.52583 11.01741 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022795 B = 0.003394 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.049240 B = 8247.230286 C = 8998.146714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.492 4.492 8 H 0.063 0.937 9 C 0.037 3.963 10 C 0.118 3.882 11 O -0.337 6.337 12 C 0.453 3.547 13 O -0.503 6.503 14 C 0.071 3.929 15 O -0.361 6.361 16 C 0.090 3.910 17 C -0.145 4.145 18 C -0.117 4.117 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.116 4.116 22 C -0.205 4.205 23 C -0.144 4.144 24 H 0.262 0.738 25 H 0.076 0.924 26 H 0.040 0.960 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.369 -11.465 -13.897 19.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.134 4.134 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.530 4.530 8 H 0.081 0.919 9 C 0.037 3.963 10 C 0.045 3.955 11 O -0.253 6.253 12 C 0.295 3.705 13 O -0.392 6.392 14 C -0.006 4.006 15 O -0.280 6.280 16 C 0.033 3.967 17 C -0.183 4.183 18 C -0.154 4.154 19 C -0.161 4.161 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.243 4.243 23 C -0.181 4.181 24 H 0.072 0.928 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.106 0.894 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.629 -11.374 -13.971 19.564 hybrid contribution 0.449 1.042 0.076 1.137 sum 8.077 -10.332 -13.896 19.107 Atomic orbital electron populations 1.69988 1.05917 1.26868 1.48951 1.25023 0.94862 0.99101 0.94462 0.86638 0.79637 0.82890 0.78745 1.20142 1.21259 1.20116 1.20352 0.93075 0.88354 1.51190 0.91890 1.18771 0.99046 0.94203 0.84323 1.22942 0.85287 0.96977 0.90334 1.86479 1.41687 1.70800 1.26343 1.23011 0.89600 0.75546 0.82392 1.90639 1.21849 1.51003 1.75662 1.21716 0.93052 1.00063 0.85817 1.88004 1.32571 1.80794 1.26644 1.22181 0.91494 0.94141 0.88925 1.22081 1.00101 0.98341 0.97774 1.21495 0.98170 0.98133 0.97630 1.21586 1.01106 0.95522 0.97841 1.21515 0.98951 0.97937 0.96931 1.21594 0.99280 0.96959 0.97575 1.23017 0.98580 0.95721 1.06953 1.22536 0.92312 1.01204 1.02074 0.92805 0.90546 0.94209 0.89201 0.89357 0.91874 0.90837 0.91494 0.91884 0.91628 0.91929 0.91747 0.91826 0.91424 0.91150 0.90869 0.91528 0.90040 0.89372 0.91604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.92 12.88 55.43 0.71 -24.21 16 2 C 0.07 1.88 5.38 -17.82 -0.10 1.79 16 3 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.49 -13.41 8.77 -34.44 -0.30 -13.71 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.04 0.92 1.62 -155.67 -0.25 0.67 16 10 C 0.12 2.83 5.29 37.16 0.20 3.03 16 11 O -0.34 -7.46 10.16 -39.25 -0.40 -7.86 16 12 C 0.45 9.05 8.03 36.00 0.29 9.34 16 13 O -0.50 -11.64 16.25 -25.48 -0.41 -12.05 16 14 C 0.07 1.04 6.34 36.00 0.23 1.27 16 15 O -0.36 -5.43 9.52 -55.18 -0.53 -5.95 16 16 C 0.09 0.98 2.61 -26.73 -0.07 0.91 16 17 C -0.15 -1.44 5.54 -26.73 -0.15 -1.59 16 18 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 19 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 20 C -0.12 -0.84 5.92 -26.71 -0.16 -1.00 16 21 C -0.12 -1.12 5.58 -26.70 -0.15 -1.26 16 22 C -0.21 -4.47 9.96 -26.70 -0.27 -4.73 16 23 C -0.14 -3.35 9.37 -26.70 -0.25 -3.60 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.08 2.04 8.13 -51.93 -0.42 1.62 16 26 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 27 H 0.09 1.15 7.87 -51.93 -0.41 0.74 16 28 H 0.09 1.04 8.09 -51.92 -0.42 0.62 16 29 H 0.06 0.59 7.79 -51.92 -0.40 0.19 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.67 7.87 -51.93 -0.41 0.26 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 42 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 43 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 355.74 15.07 5.36 5.36 Total: -1.00 -30.94 355.74 -9.10 -40.04 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -7.53 Total: -0.34 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -1.29 Total: -10.97 kcal Atomic # 7 Polarization: -24.92 SS G_CDS: 0.71 Total: -24.21 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -1.34 Total: -25.87 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.94 -9.10 -40.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174755216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.090 kcal (2) G-P(sol) polarization free energy of solvation -30.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds