Wall clock time and date at job start Tue Mar 31 2020 06:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99941 * 2 1 4 4 H 1.48495 * 109.47237 * 239.99872 * 3 2 1 5 5 H 1.48497 * 109.47041 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46788 * 119.99767 * 3 2 1 7 7 C 1.37881 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00233 * 173.70247 * 7 2 1 9 9 C 1.50698 * 119.99912 * 353.71201 * 7 2 1 10 10 C 1.53001 * 115.55222 * 86.10940 * 9 7 2 11 11 O 1.45203 * 109.47231 * 65.10114 * 10 9 7 12 12 C 1.34228 * 117.00070 * 179.97438 * 11 10 9 13 13 O 1.20831 * 119.99820 * 0.02562 * 12 11 10 14 14 C 1.50694 * 120.00208 * 180.28047 * 12 11 10 15 15 O 1.42895 * 109.47458 * 179.72676 * 14 12 11 16 16 C 1.42904 * 114.00270 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47346 * 270.00150 * 16 15 14 18 18 C 1.53003 * 109.47125 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.47128 * 59.99999 * 18 17 16 20 20 C 1.52998 * 109.47118 * 300.00005 * 19 18 17 21 21 C 1.53001 * 109.47217 * 149.99960 * 16 15 14 22 22 C 1.52996 * 117.49935 * 231.78040 * 9 7 2 23 23 C 1.52995 * 117.49881 * 300.43823 * 9 7 2 24 24 H 0.96993 * 120.00139 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47159 * 305.10389 * 10 9 7 26 26 H 1.09001 * 109.47685 * 185.10857 * 10 9 7 27 27 H 1.09001 * 109.47198 * 299.72791 * 14 12 11 28 28 H 1.09008 * 109.47312 * 59.72351 * 14 12 11 29 29 H 1.09008 * 109.46859 * 30.00182 * 16 15 14 30 30 H 1.08994 * 109.47232 * 299.99901 * 17 16 15 31 31 H 1.09000 * 109.46719 * 59.99690 * 17 16 15 32 32 H 1.09000 * 109.47105 * 299.99746 * 18 17 16 33 33 H 1.08997 * 109.46736 * 180.02562 * 18 17 16 34 34 H 1.08997 * 109.46644 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.46636 * 60.00141 * 19 18 17 36 36 H 1.09000 * 109.46921 * 300.00135 * 20 19 18 37 37 H 1.08997 * 109.47121 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.46787 * 300.00175 * 21 16 15 39 39 H 1.08994 * 109.46946 * 60.00353 * 21 16 15 40 40 H 1.09006 * 117.50114 * 215.00762 * 22 9 7 41 41 H 1.09000 * 117.49823 * 0.02562 * 22 9 7 42 42 H 1.08997 * 117.49855 * 359.97438 * 23 9 7 43 43 H 1.09007 * 117.50203 * 144.97629 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0797 -1.1969 -0.1021 9 6 1.2579 -2.4952 0.1441 10 6 0.7194 -3.0940 -1.1568 11 8 1.8303 -3.4657 -2.0148 12 6 1.5266 -4.0104 -3.2034 13 8 0.3707 -4.1709 -3.5167 14 6 2.6272 -4.4271 -4.1447 15 8 2.0550 -4.9809 -5.3312 16 6 3.0184 -5.4097 -6.2957 17 6 3.3426 -4.2521 -7.2421 18 6 4.3746 -4.7110 -8.2744 19 6 3.8062 -5.8827 -9.0776 20 6 3.4820 -7.0402 -8.1311 21 6 2.4496 -6.5811 -7.0988 22 6 1.7340 -3.4673 1.2253 23 6 0.4253 -2.6957 1.4118 24 1 -0.4850 0.8400 0.0004 25 1 0.0978 -2.3574 -1.6660 26 1 0.1234 -3.9781 -0.9306 27 1 3.2317 -3.5581 -4.4042 28 1 3.2553 -5.1752 -3.6608 29 1 3.9276 -5.7269 -5.7848 30 1 2.4335 -3.9349 -7.7529 31 1 3.7479 -3.4176 -6.6699 32 1 5.2836 -5.0279 -7.7632 33 1 4.6058 -3.8862 -8.9483 34 1 4.5413 -6.2092 -9.8132 35 1 2.8972 -5.5656 -9.5887 36 1 4.3911 -7.3571 -7.6200 37 1 3.0768 -7.8747 -8.7033 38 1 2.2186 -7.4058 -6.4245 39 1 1.5405 -6.2639 -7.6096 40 1 1.6637 -4.5335 1.0099 41 1 2.5870 -3.1656 1.8331 42 1 0.4179 -1.8867 2.1423 43 1 -0.5064 -3.2539 1.3191 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174755216.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:55 Heat of formation + Delta-G solvation = -145.683289 kcal Electronic energy + Delta-G solvation = -22197.391437 eV Core-core repulsion = 18821.114175 eV Total energy + Delta-G solvation = -3376.277262 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.46513 -40.11322 -38.62517 -37.43986 -36.84560 -34.03036 -31.73377 -31.26463 -29.64586 -28.06141 -27.08626 -23.55166 -23.18329 -23.00034 -22.09718 -21.20716 -20.76251 -18.80185 -18.40111 -17.73746 -17.54540 -17.22368 -16.63508 -16.25151 -16.02305 -15.54923 -15.17820 -14.93086 -14.78278 -14.24070 -13.99754 -13.84546 -13.62006 -13.44654 -13.16726 -13.06186 -12.91959 -12.79954 -12.41787 -12.09568 -12.06897 -12.00559 -11.71684 -11.69626 -11.50864 -11.49391 -11.30363 -11.23634 -10.79541 -10.49600 -10.46770 -10.09672 -8.14437 -6.26343 1.16229 1.39514 1.43192 1.44395 1.51752 2.42073 2.86317 3.14456 3.40695 3.70672 3.77738 3.82204 4.05308 4.10990 4.11997 4.16248 4.27856 4.31179 4.35113 4.37102 4.45730 4.56021 4.58653 4.64285 4.68595 4.80733 4.95729 4.96492 5.03833 5.13266 5.17628 5.23648 5.24244 5.31881 5.39668 5.42894 5.51904 5.57176 5.65118 5.73883 6.09752 6.34584 6.78888 6.80095 7.42789 8.94303 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022795 B = 0.003394 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.049240 B = 8247.230286 C = 8998.146714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.507 4.507 8 H 0.058 0.942 9 C 0.003 3.997 10 C 0.129 3.871 11 O -0.342 6.342 12 C 0.448 3.552 13 O -0.542 6.542 14 C 0.080 3.920 15 O -0.392 6.392 16 C 0.084 3.916 17 C -0.146 4.146 18 C -0.113 4.113 19 C -0.123 4.123 20 C -0.110 4.110 21 C -0.117 4.117 22 C -0.175 4.175 23 C -0.147 4.147 24 H 0.261 0.739 25 H 0.038 0.962 26 H 0.048 0.952 27 H 0.112 0.888 28 H 0.125 0.875 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.775 -12.427 -14.503 21.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.179 4.179 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.545 4.545 8 H 0.077 0.923 9 C 0.003 3.997 10 C 0.056 3.944 11 O -0.258 6.258 12 C 0.292 3.708 13 O -0.432 6.432 14 C 0.004 3.996 15 O -0.312 6.312 16 C 0.027 3.973 17 C -0.183 4.183 18 C -0.150 4.150 19 C -0.161 4.161 20 C -0.148 4.148 21 C -0.155 4.155 22 C -0.212 4.212 23 C -0.184 4.184 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.129 0.871 28 H 0.143 0.857 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.062 -12.349 -14.584 21.597 hybrid contribution -0.313 1.289 0.210 1.342 sum 9.749 -11.061 -14.374 20.591 Atomic orbital electron populations 1.70106 1.07252 1.27437 1.50023 1.25764 0.95606 1.02303 0.94206 0.85674 0.78445 0.78897 0.79040 1.19657 1.21193 1.19175 1.20640 0.93085 0.89757 1.50984 0.92339 1.18867 1.00730 0.94869 0.85248 1.22556 0.85511 0.96208 0.90164 1.86481 1.40818 1.71195 1.27330 1.24179 0.90647 0.74019 0.81978 1.90617 1.23926 1.52560 1.76142 1.21833 0.90794 1.01944 0.85066 1.87980 1.34793 1.81122 1.27293 1.22475 0.91623 0.94706 0.88461 1.22085 1.00070 0.98074 0.98121 1.21492 0.97779 0.98582 0.97179 1.21601 1.01236 0.95212 0.98018 1.21505 0.98652 0.98222 0.96380 1.21631 0.99494 0.96432 0.97922 1.23031 0.97582 0.96436 1.04184 1.22478 0.93720 1.01351 1.00895 0.92998 0.94361 0.93330 0.87082 0.85710 0.89635 0.92627 0.91757 0.90639 0.91087 0.90257 0.92533 0.90581 0.90438 0.91413 0.92506 0.88986 0.89370 0.91096 0.90518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.53 12.88 21.45 0.28 -52.25 16 2 C 0.02 1.18 5.38 84.66 0.46 1.64 16 3 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.51 -27.70 8.77 25.60 0.22 -27.48 16 8 H 0.06 3.16 7.82 -2.91 -0.02 3.13 16 9 C 0.00 0.16 1.62 -52.93 -0.09 0.08 16 10 C 0.13 6.33 5.29 71.98 0.38 6.71 16 11 O -0.34 -15.08 10.16 -51.39 -0.52 -15.60 16 12 C 0.45 17.82 8.03 71.23 0.57 18.40 16 13 O -0.54 -25.63 16.25 28.38 0.46 -25.17 16 14 C 0.08 2.21 6.34 71.23 0.45 2.66 16 15 O -0.39 -11.43 9.52 -129.90 -1.24 -12.67 16 16 C 0.08 1.68 2.61 30.59 0.08 1.76 16 17 C -0.15 -2.71 5.54 30.59 0.17 -2.54 16 18 C -0.11 -1.48 5.92 30.60 0.18 -1.30 16 19 C -0.12 -1.47 5.92 30.59 0.18 -1.28 16 20 C -0.11 -1.34 5.92 30.61 0.18 -1.16 16 21 C -0.12 -2.11 5.58 30.61 0.17 -1.94 16 22 C -0.18 -7.32 9.96 30.61 0.30 -7.01 16 23 C -0.15 -6.80 9.37 30.61 0.29 -6.52 16 24 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 25 H 0.04 2.13 8.13 -2.38 -0.02 2.11 16 26 H 0.05 2.24 8.08 -2.39 -0.02 2.22 16 27 H 0.11 2.60 7.87 -2.39 -0.02 2.58 16 28 H 0.13 2.53 8.09 -2.38 -0.02 2.51 16 29 H 0.09 1.33 7.79 -2.38 -0.02 1.31 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.21 7.87 -2.39 -0.02 1.19 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.09 3.37 8.14 -2.38 -0.02 3.35 16 41 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 42 H 0.07 3.49 8.14 -2.39 -0.02 3.47 16 43 H 0.08 3.32 8.14 -2.38 -0.02 3.30 16 Total: -1.00 -67.73 355.74 5.52 -62.21 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.96 Total: 16.28 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 3.55 Total: -17.98 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.28 Total: -52.25 kcal Atomic # 8 Polarization: -52.14 SS G_CDS: -1.30 Total: -53.44 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -67.73 5.52 -62.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174755216.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.473 kcal (2) G-P(sol) polarization free energy of solvation -67.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds