Wall clock time and date at job start Tue Mar 31 2020 07:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47223 * 2 1 4 4 C 1.53001 * 109.46883 * 305.22835 * 3 2 1 5 5 C 1.52993 * 109.47465 * 295.40598 * 4 3 2 6 6 C 1.52999 * 109.47566 * 65.23371 * 3 2 1 7 7 N 1.46900 * 109.47117 * 66.37152 * 6 3 2 8 8 C 1.46899 * 111.00088 * 72.34022 * 7 6 3 9 9 C 1.50702 * 109.46962 * 198.44494 * 8 7 6 10 10 H 1.07996 * 120.00295 * 5.09461 * 9 8 7 11 11 C 1.37878 * 119.99397 * 185.09179 * 9 8 7 12 12 N 1.31508 * 120.00567 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99470 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47226 * 60.00044 * 13 11 9 15 15 H 1.48498 * 109.46749 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47079 * 300.00089 * 13 11 9 17 17 C 1.46902 * 110.99804 * 196.29652 * 7 6 3 18 18 C 1.50701 * 109.47160 * 74.23699 * 17 7 6 19 19 C 1.33638 * 122.74909 * 94.73468 * 18 17 7 20 20 S 1.76200 * 107.92349 * 179.97438 * 19 18 17 21 21 C 1.70975 * 90.28165 * 0.27199 * 20 19 18 22 22 N 1.29030 * 110.16979 * 359.84299 * 21 20 19 23 23 H 1.08997 * 109.47039 * 306.42833 * 1 2 3 24 24 H 1.09001 * 109.46929 * 66.41915 * 1 2 3 25 25 H 1.08997 * 109.47567 * 186.41962 * 1 2 3 26 26 H 1.09001 * 109.47181 * 239.99452 * 2 1 3 27 27 H 1.09000 * 109.46664 * 119.99714 * 2 1 3 28 28 H 1.09003 * 109.46574 * 185.23862 * 3 2 1 29 29 H 1.09002 * 109.47007 * 55.40653 * 4 3 2 30 30 H 1.08999 * 109.47064 * 175.40162 * 4 3 2 31 31 H 1.09004 * 109.47712 * 185.88806 * 5 4 3 32 32 H 1.09002 * 109.47584 * 305.89075 * 5 4 3 33 33 H 1.09000 * 109.47466 * 65.88787 * 5 4 3 34 34 H 1.09002 * 109.46785 * 306.37218 * 6 3 2 35 35 H 1.08994 * 109.47049 * 186.37210 * 6 3 2 36 36 H 1.09000 * 109.46868 * 318.44897 * 8 7 6 37 37 H 1.08996 * 109.46732 * 78.44359 * 8 7 6 38 38 H 0.97003 * 120.00063 * 180.02562 * 12 11 9 39 39 H 1.08996 * 109.46832 * 314.23266 * 17 7 6 40 40 H 1.09006 * 109.46559 * 194.23734 * 17 7 6 41 41 H 1.08000 * 126.03677 * 0.02970 * 19 18 17 42 42 H 1.08003 * 124.91556 * 179.83772 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4255 2.2007 -1.1783 5 6 1.9174 1.5882 -2.4912 6 6 1.6404 2.1249 1.3098 7 7 2.3512 1.4916 2.4286 8 6 3.7747 1.8543 2.4208 9 6 4.5481 0.8716 3.2617 10 1 4.0486 0.0129 3.6853 11 6 5.8934 1.0689 3.4903 12 7 6.5015 2.1149 2.9749 13 14 6.8522 -0.1496 4.5321 14 1 6.7882 -1.4944 3.9057 15 1 8.2687 0.2865 4.6259 16 1 6.2619 -0.2090 5.8934 17 6 1.7267 1.8377 3.7124 18 6 0.4355 1.0757 3.8646 19 6 0.3557 -0.0887 4.5155 20 16 -1.3202 -0.6293 4.4564 21 6 -1.7454 0.7602 3.5554 22 7 -0.7061 1.4998 3.3613 23 1 -0.3633 0.6102 0.8268 24 1 -0.3633 0.4111 -0.9419 25 1 -0.3634 -1.0212 0.1149 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.1260 1.4438 -0.0938 29 1 0.3390 2.1298 -1.1290 30 1 1.7238 3.2480 -1.1317 31 1 1.5646 2.1909 -3.3281 32 1 3.0072 1.5638 -2.4950 33 1 1.5311 0.5734 -2.5860 34 1 0.5653 2.0240 1.4586 35 1 1.9033 3.1816 1.2638 36 1 4.1498 1.8313 1.3976 37 1 3.8962 2.8573 2.8298 38 1 7.4481 2.2534 3.1354 39 1 1.5224 2.9080 3.7402 40 1 2.4017 1.5754 4.5271 41 1 1.1738 -0.6065 4.9941 42 1 -2.7400 0.9861 3.2000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177032140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:22 Heat of formation + Delta-G solvation = 32.787825 kcal Electronic energy + Delta-G solvation = -21004.137366 eV Core-core repulsion = 18110.644814 eV Total energy + Delta-G solvation = -2893.492552 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.66401 -37.75428 -35.22111 -32.51427 -30.85191 -30.53451 -28.11338 -27.26981 -25.32233 -24.14455 -23.45791 -22.64417 -20.55574 -19.18785 -18.24281 -17.67094 -16.45950 -15.53419 -15.29879 -14.82259 -14.73062 -14.46402 -13.95570 -13.50622 -13.35745 -12.94294 -12.75020 -12.53871 -12.23716 -12.18161 -11.71505 -11.56007 -11.51247 -11.19391 -11.01728 -10.92936 -10.76445 -10.56750 -10.48525 -10.05871 -9.87962 -9.75143 -9.63123 -9.37095 -9.21664 -9.16863 -8.57091 -8.39344 -7.18881 -6.00819 -4.02304 1.00092 1.63538 1.96098 3.10549 3.32686 3.37574 3.39818 4.42764 4.47700 4.97938 5.30103 5.33807 5.33934 5.43454 5.53657 5.60722 5.62070 5.71500 5.73023 5.81422 6.06453 6.11483 6.14828 6.21713 6.25261 6.29786 6.36488 6.37178 6.43431 6.51974 6.62206 6.71205 6.77169 6.99784 7.07105 7.28101 7.39857 7.84494 8.00622 8.15961 8.22378 8.58179 9.06034 9.61954 11.09327 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.011177 B = 0.007031 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.524436 B = 3981.447725 C = 5795.155370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.106 4.106 3 C -0.081 4.081 4 C -0.120 4.120 5 C -0.149 4.149 6 C 0.054 3.946 7 N -0.526 5.526 8 C 0.192 3.808 9 C -0.505 4.505 10 H 0.062 0.938 11 C 0.056 3.944 12 N -0.898 5.898 13 Si 0.894 3.106 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.278 1.278 17 C 0.133 3.867 18 C 0.085 3.915 19 C -0.227 4.227 20 S 0.080 5.920 21 C 0.013 3.987 22 N -0.460 5.460 23 H 0.059 0.941 24 H 0.045 0.955 25 H 0.039 0.961 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.018 0.982 36 H 0.032 0.968 37 H -0.005 1.005 38 H 0.261 0.739 39 H 0.037 0.963 40 H 0.098 0.902 41 H 0.178 0.822 42 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.162 -3.240 -2.179 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.144 4.144 3 C -0.100 4.100 4 C -0.158 4.158 5 C -0.206 4.206 6 C -0.074 4.074 7 N -0.250 5.250 8 C 0.067 3.933 9 C -0.543 4.543 10 H 0.080 0.920 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.722 3.278 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.203 1.203 17 C 0.002 3.998 18 C -0.046 4.046 19 C -0.367 4.367 20 S 0.330 5.670 21 C -0.285 4.285 22 N -0.174 5.174 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.036 0.964 36 H 0.050 0.950 37 H 0.013 0.987 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.116 0.884 41 H 0.195 0.805 42 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -15.625 -3.999 -2.184 16.276 hybrid contribution 1.432 0.688 0.504 1.667 sum -14.193 -3.311 -1.680 14.671 Atomic orbital electron populations 1.21862 0.97240 1.00433 1.01211 1.21355 0.94695 0.96583 1.01753 1.21162 1.00721 0.94930 0.93182 1.21593 1.00374 0.99205 0.94662 1.21766 1.01347 1.00575 0.96910 1.22234 0.99160 0.94719 0.91314 1.61996 1.04807 1.58557 0.99671 1.19781 0.80944 0.94924 0.97611 1.21128 0.93361 1.08966 1.30881 0.91991 1.24977 0.97774 0.95527 0.96238 1.69944 1.10691 1.27970 1.45196 0.86623 0.78846 0.81550 0.80741 1.20252 1.21439 1.20346 1.20527 0.88793 0.95083 0.95392 1.20535 0.94017 0.94110 0.95894 1.26847 0.98911 1.00990 1.09906 1.83836 1.04326 1.26800 1.52011 1.28242 1.02145 0.95031 1.03113 1.66168 0.98521 1.32382 1.20311 0.92188 0.93580 0.94150 0.93429 0.90504 0.90678 0.92154 0.92691 0.93584 0.92737 0.92804 0.90381 0.96384 0.94997 0.98724 0.92925 0.94462 0.88366 0.80514 0.79140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.10 37.16 0.34 -1.84 16 2 C -0.11 -1.75 5.28 -26.73 -0.14 -1.89 16 3 C -0.08 -1.41 2.19 -90.62 -0.20 -1.60 16 4 C -0.12 -1.75 5.06 -26.73 -0.14 -1.89 16 5 C -0.15 -1.93 9.51 37.15 0.35 -1.58 16 6 C 0.05 1.02 4.07 -3.82 -0.02 1.00 16 7 N -0.53 -11.04 3.75 -237.52 -0.89 -11.93 16 8 C 0.19 4.86 4.57 -4.98 -0.02 4.83 16 9 C -0.50 -13.69 8.44 -34.44 -0.29 -13.98 16 10 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 11 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 12 N -0.90 -26.33 13.29 55.43 0.74 -25.59 16 13 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 C 0.13 2.59 5.24 -4.97 -0.03 2.56 16 18 C 0.09 1.44 5.85 -84.23 -0.49 0.95 16 19 C -0.23 -3.42 11.12 29.12 0.32 -3.10 16 20 S 0.08 0.94 23.22 -107.50 -2.50 -1.56 16 21 C 0.01 0.16 12.23 51.59 0.63 0.79 16 22 N -0.46 -7.20 9.03 -11.90 -0.11 -7.31 16 23 H 0.06 0.93 6.00 -51.93 -0.31 0.62 16 24 H 0.05 0.60 6.63 -51.93 -0.34 0.26 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.74 6.96 -51.93 -0.36 0.37 16 27 H 0.08 1.47 7.66 -51.93 -0.40 1.07 16 28 H 0.07 1.50 6.41 -51.93 -0.33 1.17 16 29 H 0.06 0.83 6.22 -51.93 -0.32 0.51 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.67 6.97 -51.93 -0.36 0.31 16 34 H 0.08 1.41 4.30 -51.93 -0.22 1.19 16 35 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 36 H 0.03 0.86 6.22 -51.93 -0.32 0.54 16 37 H -0.01 -0.14 8.02 -51.93 -0.42 -0.56 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.04 0.73 8.02 -51.93 -0.42 0.32 16 40 H 0.10 2.01 7.22 -51.93 -0.37 1.64 16 41 H 0.18 2.57 8.06 -52.49 -0.42 2.14 16 42 H 0.19 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 341.73 15.07 5.15 5.15 Total: -1.00 -28.93 341.73 -9.09 -38.02 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.69 Total: 1.21 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 0.23 Total: -14.28 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -0.26 Total: -44.83 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.50 Total: -1.56 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.93 -9.09 -38.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177032140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.807 kcal (2) G-P(sol) polarization free energy of solvation -28.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds