Wall clock time and date at job start Tue Mar 31 2020 07:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47223 * 2 1 4 4 C 1.53001 * 109.46883 * 305.22835 * 3 2 1 5 5 C 1.52993 * 109.47465 * 295.40598 * 4 3 2 6 6 C 1.52999 * 109.47566 * 65.23371 * 3 2 1 7 7 N 1.46900 * 109.47117 * 66.37152 * 6 3 2 8 8 C 1.46899 * 111.00088 * 72.34022 * 7 6 3 9 9 C 1.50702 * 109.46962 * 198.44494 * 8 7 6 10 10 H 1.07996 * 120.00295 * 5.09461 * 9 8 7 11 11 C 1.37878 * 119.99397 * 185.09179 * 9 8 7 12 12 N 1.31508 * 120.00567 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99470 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47226 * 60.00044 * 13 11 9 15 15 H 1.48498 * 109.46749 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47079 * 300.00089 * 13 11 9 17 17 C 1.46902 * 110.99804 * 196.29652 * 7 6 3 18 18 C 1.50701 * 109.47160 * 74.23699 * 17 7 6 19 19 C 1.33638 * 122.74909 * 94.73468 * 18 17 7 20 20 S 1.76200 * 107.92349 * 179.97438 * 19 18 17 21 21 C 1.70975 * 90.28165 * 0.27199 * 20 19 18 22 22 N 1.29030 * 110.16979 * 359.84299 * 21 20 19 23 23 H 1.08997 * 109.47039 * 306.42833 * 1 2 3 24 24 H 1.09001 * 109.46929 * 66.41915 * 1 2 3 25 25 H 1.08997 * 109.47567 * 186.41962 * 1 2 3 26 26 H 1.09001 * 109.47181 * 239.99452 * 2 1 3 27 27 H 1.09000 * 109.46664 * 119.99714 * 2 1 3 28 28 H 1.09003 * 109.46574 * 185.23862 * 3 2 1 29 29 H 1.09002 * 109.47007 * 55.40653 * 4 3 2 30 30 H 1.08999 * 109.47064 * 175.40162 * 4 3 2 31 31 H 1.09004 * 109.47712 * 185.88806 * 5 4 3 32 32 H 1.09002 * 109.47584 * 305.89075 * 5 4 3 33 33 H 1.09000 * 109.47466 * 65.88787 * 5 4 3 34 34 H 1.09002 * 109.46785 * 306.37218 * 6 3 2 35 35 H 1.08994 * 109.47049 * 186.37210 * 6 3 2 36 36 H 1.09000 * 109.46868 * 318.44897 * 8 7 6 37 37 H 1.08996 * 109.46732 * 78.44359 * 8 7 6 38 38 H 0.97003 * 120.00063 * 180.02562 * 12 11 9 39 39 H 1.08996 * 109.46832 * 314.23266 * 17 7 6 40 40 H 1.09006 * 109.46559 * 194.23734 * 17 7 6 41 41 H 1.08000 * 126.03677 * 0.02970 * 19 18 17 42 42 H 1.08003 * 124.91556 * 179.83772 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4255 2.2007 -1.1783 5 6 1.9174 1.5882 -2.4912 6 6 1.6404 2.1249 1.3098 7 7 2.3512 1.4916 2.4286 8 6 3.7747 1.8543 2.4208 9 6 4.5481 0.8716 3.2617 10 1 4.0486 0.0129 3.6853 11 6 5.8934 1.0689 3.4903 12 7 6.5015 2.1149 2.9749 13 14 6.8522 -0.1496 4.5321 14 1 6.7882 -1.4944 3.9057 15 1 8.2687 0.2865 4.6259 16 1 6.2619 -0.2090 5.8934 17 6 1.7267 1.8377 3.7124 18 6 0.4355 1.0757 3.8646 19 6 0.3557 -0.0887 4.5155 20 16 -1.3202 -0.6293 4.4564 21 6 -1.7454 0.7602 3.5554 22 7 -0.7061 1.4998 3.3613 23 1 -0.3633 0.6102 0.8268 24 1 -0.3633 0.4111 -0.9419 25 1 -0.3634 -1.0212 0.1149 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.1260 1.4438 -0.0938 29 1 0.3390 2.1298 -1.1290 30 1 1.7238 3.2480 -1.1317 31 1 1.5646 2.1909 -3.3281 32 1 3.0072 1.5638 -2.4950 33 1 1.5311 0.5734 -2.5860 34 1 0.5653 2.0240 1.4586 35 1 1.9033 3.1816 1.2638 36 1 4.1498 1.8313 1.3976 37 1 3.8962 2.8573 2.8298 38 1 7.4481 2.2534 3.1354 39 1 1.5224 2.9080 3.7402 40 1 2.4017 1.5754 4.5271 41 1 1.1738 -0.6065 4.9941 42 1 -2.7400 0.9861 3.2000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177032140.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:21 Heat of formation + Delta-G solvation = 16.198330 kcal Electronic energy + Delta-G solvation = -21004.856740 eV Core-core repulsion = 18110.644814 eV Total energy + Delta-G solvation = -2894.211926 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.89668 -39.19276 -36.79291 -34.59639 -32.05361 -31.81257 -29.80464 -28.85599 -26.77477 -25.39160 -25.02498 -24.13340 -22.17673 -20.38752 -19.68200 -18.79887 -18.54966 -16.96093 -16.70152 -16.43655 -16.12636 -15.95360 -15.52404 -14.90460 -14.73026 -14.18261 -14.04520 -13.97640 -13.70289 -13.52636 -13.39843 -13.11629 -12.91104 -12.77626 -12.62568 -12.43936 -12.25199 -12.10058 -12.00523 -11.84786 -11.26646 -11.22888 -11.11918 -11.05141 -10.57762 -10.48260 -10.26578 -9.67295 -8.97982 -8.16833 -6.26836 -0.06802 0.60423 0.89052 1.40865 1.43698 1.51364 1.89686 2.41422 3.14894 3.30934 3.52326 3.98508 4.05224 4.13415 4.21563 4.32068 4.41874 4.50921 4.55349 4.63061 4.70596 4.75140 4.83181 4.83568 4.92951 4.97289 5.03318 5.08892 5.17785 5.19373 5.25268 5.32695 5.34460 5.41336 5.45176 5.61067 5.69624 5.74877 6.11596 6.36996 6.64009 6.88820 6.91930 7.42621 8.93350 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.011177 B = 0.007031 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.524436 B = 3981.447725 C = 5795.155370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 C -0.079 4.079 4 C -0.115 4.115 5 C -0.145 4.145 6 C 0.059 3.941 7 N -0.523 5.523 8 C 0.211 3.789 9 C -0.515 4.515 10 H 0.063 0.937 11 C 0.003 3.997 12 N -0.936 5.936 13 Si 0.965 3.035 14 H -0.269 1.269 15 H -0.286 1.286 16 H -0.266 1.266 17 C 0.136 3.864 18 C 0.069 3.931 19 C -0.250 4.250 20 S 0.159 5.841 21 C 0.019 3.981 22 N -0.491 5.491 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.038 0.962 29 H 0.077 0.923 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.000 1.000 36 H 0.007 0.993 37 H -0.040 1.040 38 H 0.263 0.737 39 H 0.025 0.975 40 H 0.078 0.922 41 H 0.174 0.826 42 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.778 -5.159 -2.339 18.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.138 4.138 3 C -0.098 4.098 4 C -0.152 4.152 5 C -0.202 4.202 6 C -0.069 4.069 7 N -0.246 5.246 8 C 0.084 3.916 9 C -0.553 4.553 10 H 0.081 0.919 11 C -0.195 4.195 12 N -0.576 5.576 13 Si 0.789 3.211 14 H -0.194 1.194 15 H -0.211 1.211 16 H -0.191 1.191 17 C 0.006 3.994 18 C -0.062 4.062 19 C -0.390 4.390 20 S 0.411 5.589 21 C -0.279 4.279 22 N -0.206 5.206 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.018 0.982 36 H 0.025 0.975 37 H -0.023 1.023 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.097 0.903 41 H 0.192 0.808 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -18.276 -5.933 -2.337 19.357 hybrid contribution 2.128 1.271 0.572 2.544 sum -16.148 -4.662 -1.765 16.900 Atomic orbital electron populations 1.21769 0.94979 1.01215 1.01802 1.21264 0.96569 0.95238 1.00728 1.21118 0.98701 0.96293 0.93641 1.21550 1.01090 0.98488 0.94118 1.21738 1.00529 1.01398 0.96559 1.22292 0.99629 0.93642 0.91378 1.61983 1.02822 1.58528 1.01300 1.19396 0.83820 0.92833 0.95502 1.21399 0.93900 1.09116 1.30908 0.91860 1.25872 0.98830 0.97350 0.97447 1.70087 1.11028 1.29897 1.46637 0.85507 0.77182 0.79071 0.79296 1.19443 1.21115 1.19102 1.20354 0.90274 0.95022 0.93793 1.20024 0.93427 0.94810 0.97987 1.26973 1.01761 1.00790 1.09513 1.83563 1.00205 1.24917 1.50265 1.28918 1.02722 0.94609 1.01635 1.66107 0.98773 1.33840 1.21903 0.93222 0.91612 0.92877 0.92308 0.93666 0.94382 0.90455 0.93286 0.91392 0.94099 0.91876 0.88799 0.98222 0.97484 1.02274 0.92840 0.95649 0.90318 0.80814 0.75285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 9.10 71.98 0.65 -3.06 16 2 C -0.10 -3.27 5.28 30.60 0.16 -3.10 16 3 C -0.08 -2.80 2.19 -10.79 -0.02 -2.83 16 4 C -0.11 -3.25 5.06 30.59 0.15 -3.10 16 5 C -0.14 -3.55 9.51 71.98 0.68 -2.87 16 6 C 0.06 2.30 4.07 86.30 0.35 2.65 16 7 N -0.52 -23.26 3.75 -905.37 -3.39 -26.65 16 8 C 0.21 11.44 4.57 85.56 0.39 11.83 16 9 C -0.51 -29.18 8.44 25.60 0.22 -28.97 16 10 H 0.06 3.50 7.81 -2.91 -0.02 3.48 16 11 C 0.00 0.16 5.46 84.66 0.46 0.62 16 12 N -0.94 -56.99 13.29 21.45 0.28 -56.70 16 13 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 15 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 16 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 17 C 0.14 5.62 5.24 85.56 0.45 6.07 16 18 C 0.07 2.32 5.85 41.52 0.24 2.57 16 19 C -0.25 -7.35 11.12 66.78 0.74 -6.61 16 20 S 0.16 3.22 23.22 -56.49 -1.31 1.90 16 21 C 0.02 0.40 12.23 130.65 1.60 2.00 16 22 N -0.49 -14.75 9.03 -191.55 -1.73 -16.48 16 23 H 0.05 1.42 6.00 -2.39 -0.01 1.41 16 24 H 0.06 1.49 6.63 -2.39 -0.02 1.47 16 25 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 1.76 6.96 -2.39 -0.02 1.74 16 27 H 0.04 1.75 7.66 -2.39 -0.02 1.73 16 28 H 0.04 1.63 6.41 -2.39 -0.02 1.61 16 29 H 0.08 1.95 6.22 -2.39 -0.01 1.93 16 30 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.43 6.97 -2.39 -0.02 1.41 16 34 H 0.09 3.42 4.30 -2.39 -0.01 3.41 16 35 H 0.00 -0.02 8.05 -2.39 -0.02 -0.04 16 36 H 0.01 0.42 6.22 -2.39 -0.01 0.40 16 37 H -0.04 -2.43 8.02 -2.39 -0.02 -2.45 16 38 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.03 1.07 8.02 -2.39 -0.02 1.06 16 40 H 0.08 3.46 7.22 -2.38 -0.02 3.45 16 41 H 0.17 5.06 8.06 -2.91 -0.02 5.03 16 42 H 0.23 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -65.79 341.73 2.95 -62.84 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.99 Total: 13.43 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: 6.08 Total: -24.80 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -4.84 Total: -99.83 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.31 Total: 1.90 kcal Total: -65.79 2.95 -62.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177032140.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.034 kcal (2) G-P(sol) polarization free energy of solvation -65.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds