Wall clock time and date at job start Tue Mar 31 2020 06:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50693 * 109.46951 * 2 1 4 4 N 1.29025 * 124.91866 * 89.97557 * 3 2 1 5 5 C 1.31779 * 117.12937 * 179.97438 * 4 3 2 6 6 C 1.50701 * 122.75588 * 180.02562 * 5 4 3 7 7 C 1.33647 * 114.49966 * 359.97438 * 5 4 3 8 8 C 1.50695 * 126.03776 * 180.02562 * 7 5 4 9 9 H 1.08994 * 109.47229 * 344.99769 * 8 7 5 10 10 C 1.52993 * 109.47261 * 105.00206 * 8 7 5 11 11 N 1.46904 * 109.46760 * 225.00297 * 8 7 5 12 12 C 1.46899 * 111.00029 * 155.00092 * 11 8 7 13 13 C 1.52997 * 109.47254 * 179.97438 * 12 11 8 14 14 C 1.52992 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.47592 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00057 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00356 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99989 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00117 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46744 * 90.00434 * 19 17 15 21 21 H 1.48500 * 109.47304 * 210.00023 * 19 17 15 22 22 H 1.48498 * 109.47341 * 330.00626 * 19 17 15 23 23 S 1.70982 * 124.91670 * 270.28884 * 3 2 1 24 24 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46995 * 300.00041 * 1 2 3 26 26 H 1.09004 * 109.46856 * 60.00378 * 1 2 3 27 27 H 1.08997 * 109.46995 * 239.99959 * 2 1 3 28 28 H 1.09000 * 109.47113 * 120.00055 * 2 1 3 29 29 H 1.09004 * 109.46711 * 270.00159 * 6 5 4 30 30 H 1.09003 * 109.46496 * 29.99464 * 6 5 4 31 31 H 1.08993 * 109.47297 * 149.99535 * 6 5 4 32 32 H 1.08999 * 109.47404 * 299.99809 * 10 8 7 33 33 H 1.09004 * 109.47538 * 59.99756 * 10 8 7 34 34 H 1.09001 * 109.46997 * 179.97438 * 10 8 7 35 35 H 1.00908 * 110.99583 * 278.95004 * 11 8 7 36 36 H 1.09002 * 109.47043 * 299.99792 * 12 11 8 37 37 H 1.09001 * 109.47354 * 59.99854 * 12 11 8 38 38 H 1.09002 * 109.47153 * 300.00004 * 13 12 11 39 39 H 1.08998 * 109.47533 * 59.99633 * 13 12 11 40 40 H 1.09002 * 109.47103 * 300.00247 * 14 13 12 41 41 H 1.09001 * 109.47066 * 60.00169 * 14 13 12 42 42 H 0.96996 * 119.99885 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2781 2.1172 1.0580 5 6 2.7138 3.3480 0.8794 6 6 3.0405 4.2716 2.0245 7 6 2.8434 3.7098 -0.4007 8 6 3.3188 5.0500 -0.8994 9 1 3.2915 5.7719 -0.0833 10 6 4.7520 4.9216 -1.4192 11 7 2.4427 5.5067 -1.9866 12 6 2.4653 6.9711 -2.1010 13 6 1.5437 7.4078 -3.2414 14 6 1.5667 8.9330 -3.3603 15 6 0.6594 9.3632 -4.4840 16 1 0.1198 8.6228 -5.0560 17 6 0.5172 10.7020 -4.7812 18 7 1.1738 11.6037 -4.0844 19 14 -0.6069 11.2351 -6.1746 20 1 -1.9762 11.4618 -5.6466 21 1 -0.0922 12.4934 -6.7721 22 1 -0.6461 10.1740 -7.2127 23 16 2.3519 2.3458 -1.4020 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.1504 4.8371 2.3004 30 1 3.3777 3.6852 2.8793 31 1 3.8294 4.9602 1.7223 32 1 5.4020 4.5827 -0.6125 33 1 4.7793 4.1997 -2.2354 34 1 5.0957 5.8909 -1.7803 35 1 2.6952 5.0717 -2.8614 36 1 2.1220 7.4139 -1.1660 37 1 3.4824 7.3036 -2.3086 38 1 1.8874 6.9650 -4.1763 39 1 0.5265 7.0753 -3.0343 40 1 1.2228 9.3755 -2.4254 41 1 2.5838 9.2659 -3.5673 42 1 1.0740 12.5455 -4.2937 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178640706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:33 Heat of formation + Delta-G solvation = 9.410740 kcal Electronic energy + Delta-G solvation = -19354.467210 eV Core-core repulsion = 16459.960952 eV Total energy + Delta-G solvation = -2894.506258 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.06372 -37.37213 -34.68157 -33.74984 -32.12934 -30.78002 -29.28193 -27.32217 -25.91891 -25.47644 -22.87746 -22.02046 -21.67921 -20.30101 -18.81610 -17.80047 -16.35560 -15.71757 -15.42248 -14.98790 -14.70321 -14.53269 -14.29578 -13.98297 -13.68426 -13.26963 -13.08241 -13.04055 -12.62095 -12.31608 -12.20004 -11.99937 -11.92461 -11.71025 -11.57006 -11.41931 -11.27420 -11.02607 -10.85060 -10.60071 -10.52153 -9.72524 -9.65365 -9.38654 -9.19394 -9.05016 -8.61518 -8.34227 -8.25160 -5.99454 -4.01479 0.69328 1.33492 1.78357 2.72802 3.32675 3.38683 3.42266 3.92752 4.27776 4.48156 4.68472 4.74282 4.87962 4.93794 4.95753 5.13295 5.22486 5.32142 5.36474 5.50301 5.52744 5.57702 5.60767 5.64775 5.69378 5.79515 5.85173 5.86926 5.92305 6.00579 6.22892 6.28674 6.68999 6.72437 7.11763 7.24002 7.50688 7.68359 7.72969 7.82960 8.00850 8.44127 9.05683 9.62569 11.12024 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.024193 B = 0.002998 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.088369 B = 9338.027170 C = 9914.654084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.044 4.044 3 C 0.032 3.968 4 N -0.469 5.469 5 C 0.055 3.945 6 C -0.077 4.077 7 C -0.192 4.192 8 C 0.156 3.844 9 H 0.098 0.902 10 C -0.179 4.179 11 N -0.684 5.684 12 C 0.060 3.940 13 C -0.107 4.107 14 C 0.023 3.977 15 C -0.519 4.519 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.274 1.274 23 S 0.138 5.862 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.338 0.662 36 H 0.069 0.931 37 H 0.028 0.972 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.016 0.984 41 H 0.014 0.986 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.391 -21.871 9.296 24.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 C -0.246 4.246 4 N -0.183 5.183 5 C -0.077 4.077 6 C -0.136 4.136 7 C -0.314 4.314 8 C 0.043 3.957 9 H 0.116 0.884 10 C -0.238 4.238 11 N -0.314 5.314 12 C -0.068 4.068 13 C -0.145 4.145 14 C -0.015 4.015 15 C -0.557 4.557 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.199 1.199 23 S 0.394 5.606 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.157 0.843 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.034 0.966 41 H 0.032 0.968 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.682 -22.133 9.116 24.390 hybrid contribution 0.437 1.133 -0.459 1.298 sum 5.118 -21.000 8.658 23.284 Atomic orbital electron populations 1.21774 0.93585 1.02345 1.02879 1.20158 0.96703 0.87746 1.03852 1.26895 1.04391 1.01706 0.91593 1.66076 1.14650 1.05754 1.31863 1.20071 1.01976 0.91752 0.93940 1.20339 1.02041 0.96693 0.94565 1.25739 1.09491 1.00629 0.95501 1.19899 0.89949 0.90096 0.95737 0.88365 1.22530 0.96935 1.02639 1.01707 1.60686 1.54118 1.08793 1.07813 1.22179 0.98789 0.84899 1.00943 1.21624 0.98129 0.99789 0.94947 1.19056 0.97022 0.88393 0.97013 1.21255 1.26369 0.91883 1.16211 0.92676 1.25030 0.96002 0.96859 0.96630 1.69965 1.42260 1.00996 1.40410 0.86595 0.80937 0.78041 0.82448 1.20647 1.21254 1.19870 1.83884 1.60155 1.04630 1.11901 0.91555 0.91992 0.92223 0.89905 0.89134 0.90646 0.90882 0.90871 0.91885 0.92301 0.91403 0.84328 0.91280 0.95373 0.93620 0.92530 0.96577 0.96798 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.90 37.16 0.37 -0.76 16 2 C -0.04 -0.36 6.52 -27.88 -0.18 -0.54 16 3 C 0.03 0.37 6.64 -13.46 -0.09 0.28 16 4 N -0.47 -6.24 10.53 -8.06 -0.08 -6.33 16 5 C 0.05 0.70 6.74 -84.22 -0.57 0.14 16 6 C -0.08 -0.80 9.81 36.01 0.35 -0.44 16 7 C -0.19 -2.43 5.48 -35.92 -0.20 -2.63 16 8 C 0.16 1.93 2.75 -68.87 -0.19 1.74 16 9 H 0.10 1.21 6.43 -51.93 -0.33 0.87 16 10 C -0.18 -1.91 9.14 37.15 0.34 -1.57 16 11 N -0.68 -9.88 6.13 -107.96 -0.66 -10.54 16 12 C 0.06 1.01 5.48 -3.83 -0.02 0.99 16 13 C -0.11 -2.20 5.41 -26.74 -0.14 -2.35 16 14 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 15 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 16 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 19 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 S 0.14 1.58 23.06 -107.50 -2.48 -0.90 16 24 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.66 7.03 -51.93 -0.37 0.29 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 34 H 0.07 0.74 7.45 -51.93 -0.39 0.35 16 35 H 0.34 4.65 8.47 -39.29 -0.33 4.32 16 36 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 37 H 0.03 0.46 7.44 -51.93 -0.39 0.08 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 358.04 15.07 5.40 5.40 Total: -1.00 -31.46 358.04 -10.25 -41.72 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -7.26 Total: -1.42 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: -0.88 Total: -18.33 kcal Atomic # 7 Polarization: -43.25 SS G_CDS: -0.01 Total: -43.26 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.48 Total: -0.90 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.46 -10.25 -41.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178640706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.129 kcal (2) G-P(sol) polarization free energy of solvation -31.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds