Wall clock time and date at job start Tue Mar 31 2020 06:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50708 * 109.46901 * 2 1 4 4 N 1.29027 * 124.91424 * 90.04565 * 3 2 1 5 5 C 1.31781 * 117.11619 * 179.67718 * 4 3 2 6 6 C 1.50706 * 122.74620 * 180.33195 * 5 4 3 7 7 C 1.33633 * 114.50402 * 0.51982 * 5 4 3 8 8 C 1.50708 * 126.03774 * 179.78872 * 7 5 4 9 9 H 1.08999 * 109.46904 * 14.71385 * 8 7 5 10 10 C 1.52999 * 109.47150 * 254.71472 * 8 7 5 11 11 N 1.46903 * 109.46830 * 134.71170 * 8 7 5 12 12 C 1.46898 * 110.99673 * 204.99929 * 11 8 7 13 13 C 1.53006 * 109.47006 * 180.02562 * 12 11 8 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47055 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00290 * 0.02562 * 15 14 13 17 17 C 1.37887 * 120.00079 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99685 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00129 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46879 * 60.00177 * 19 17 15 21 21 H 1.48494 * 109.47196 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47151 * 300.00589 * 19 17 15 23 23 S 1.70978 * 124.91187 * 269.99812 * 3 2 1 24 24 H 1.09001 * 109.47115 * 299.99984 * 1 2 3 25 25 H 1.08994 * 109.47504 * 59.99873 * 1 2 3 26 26 H 1.08997 * 109.47036 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47115 * 240.00016 * 2 1 3 28 28 H 1.08997 * 109.47085 * 119.99838 * 2 1 3 29 29 H 1.09008 * 109.47001 * 270.20128 * 6 5 4 30 30 H 1.08992 * 109.47072 * 30.19853 * 6 5 4 31 31 H 1.08997 * 109.47049 * 150.20229 * 6 5 4 32 32 H 1.08996 * 109.46853 * 180.02562 * 10 8 7 33 33 H 1.08998 * 109.46692 * 300.00039 * 10 8 7 34 34 H 1.08994 * 109.47047 * 59.99952 * 10 8 7 35 35 H 1.00897 * 110.99542 * 81.05070 * 11 8 7 36 36 H 1.09001 * 109.47392 * 60.00807 * 12 11 8 37 37 H 1.09001 * 109.47520 * 300.00529 * 12 11 8 38 38 H 1.09001 * 109.47002 * 299.99782 * 13 12 11 39 39 H 1.08993 * 109.46955 * 60.00219 * 13 12 11 40 40 H 1.09001 * 109.47289 * 299.99953 * 14 13 12 41 41 H 1.09004 * 109.47261 * 59.99697 * 14 13 12 42 42 H 0.96999 * 119.99910 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2792 2.1169 1.0580 5 6 2.7205 3.3457 0.8792 6 6 3.0556 4.2663 2.0245 7 6 2.8427 3.7100 -0.4007 8 6 3.3172 5.0506 -0.8995 9 1 3.7928 5.5944 -0.0833 10 6 2.1229 5.8531 -1.4195 11 7 4.2857 4.8537 -1.9865 12 6 5.1899 6.0057 -2.1008 13 6 6.1813 5.7647 -3.2411 14 6 7.1235 6.9643 -3.3598 15 6 8.1003 6.7266 -4.4825 16 1 8.0534 5.8117 -5.0545 17 6 9.0532 7.6777 -4.7802 18 7 9.1099 8.7920 -4.0840 19 14 10.2635 7.3834 -6.1723 20 1 9.5201 7.2095 -7.4460 21 1 11.1781 8.5476 -6.2875 22 1 11.0547 6.1589 -5.8899 23 16 2.3585 2.3435 -1.4021 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.1683 4.8334 2.3063 30 1 3.3961 3.6775 2.8761 31 1 3.8444 4.9537 1.7192 32 1 2.4662 6.8225 -1.7807 33 1 1.6475 5.3092 -2.2357 34 1 1.4045 5.9991 -0.6130 35 1 3.8158 4.6747 -2.8612 36 1 5.7354 6.1337 -1.1658 37 1 4.6092 6.9044 -2.3086 38 1 6.7621 4.8660 -3.0337 39 1 5.6356 5.6370 -4.1759 40 1 6.5430 7.8633 -3.5670 41 1 7.6692 7.0916 -2.4248 42 1 9.7805 9.4609 -4.2932 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178640714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:38 Heat of formation + Delta-G solvation = 9.800350 kcal Electronic energy + Delta-G solvation = -19327.717225 eV Core-core repulsion = 16433.227862 eV Total energy + Delta-G solvation = -2894.489364 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.06521 -37.37297 -34.68868 -33.75600 -32.13021 -30.78900 -29.28998 -27.30885 -25.92615 -25.49805 -22.87690 -22.03477 -21.68369 -20.29903 -18.81022 -17.79998 -16.36220 -15.83544 -15.12765 -15.04724 -14.86881 -14.51999 -14.31565 -14.03447 -13.61612 -13.27882 -13.19613 -12.99391 -12.61776 -12.27765 -12.18291 -12.12841 -11.90796 -11.70556 -11.55848 -11.41809 -11.28183 -11.01130 -10.83451 -10.59642 -10.54471 -9.72269 -9.65262 -9.38513 -9.19554 -9.05773 -8.62556 -8.33786 -8.25167 -5.99138 -4.01200 0.69436 1.33452 1.78276 2.72896 3.34203 3.38294 3.41114 3.92211 4.27957 4.48298 4.67703 4.73055 4.85559 4.92688 4.93813 5.12070 5.24810 5.30463 5.36634 5.49304 5.49721 5.53355 5.59112 5.61865 5.71310 5.79712 5.83197 5.87127 5.89609 6.00395 6.23594 6.28678 6.69159 6.72483 7.11879 7.24071 7.50750 7.68293 7.72908 7.83117 8.01032 8.44308 9.05693 9.62683 11.12287 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.028640 B = 0.002882 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.431998 B = 9714.502317 C =10163.430322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C 0.032 3.968 4 N -0.469 5.469 5 C 0.054 3.946 6 C -0.077 4.077 7 C -0.191 4.191 8 C 0.156 3.844 9 H 0.099 0.901 10 C -0.178 4.178 11 N -0.684 5.684 12 C 0.060 3.940 13 C -0.107 4.107 14 C 0.023 3.977 15 C -0.520 4.520 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 S 0.137 5.863 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.338 0.662 36 H 0.069 0.931 37 H 0.028 0.972 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.014 0.986 41 H 0.016 0.984 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.861 -13.253 9.300 24.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.086 4.086 3 C -0.246 4.246 4 N -0.183 5.183 5 C -0.078 4.078 6 C -0.137 4.137 7 C -0.313 4.313 8 C 0.043 3.957 9 H 0.117 0.883 10 C -0.237 4.237 11 N -0.314 5.314 12 C -0.068 4.068 13 C -0.145 4.145 14 C -0.015 4.015 15 C -0.558 4.558 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 S 0.394 5.606 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.157 0.843 36 H 0.087 0.913 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.467 -13.902 9.126 24.851 hybrid contribution 0.377 1.137 -0.471 1.287 sum -18.089 -12.764 8.655 23.771 Atomic orbital electron populations 1.21761 0.93742 1.02353 1.02573 1.20167 0.96511 0.87822 1.04079 1.26888 1.04295 1.01776 0.91591 1.66087 1.14716 1.05674 1.31854 1.20063 1.02148 0.91594 0.93952 1.20350 1.01724 0.96870 0.94707 1.25730 1.09242 1.00852 0.95503 1.19927 0.91676 0.88374 0.95733 0.88323 1.22517 0.98667 1.00875 1.01674 1.60692 1.20635 1.42276 1.07845 1.22179 0.94037 0.89652 1.00943 1.21625 0.96591 1.01323 0.94943 1.19053 0.93388 0.92002 0.97014 1.21217 1.14867 1.03423 1.16284 0.92731 1.25031 0.97658 0.95198 0.96618 1.69954 1.35262 1.08039 1.40364 0.86653 0.81054 0.77614 0.82659 1.20263 1.21308 1.20215 1.83886 1.59440 1.05383 1.11905 0.92089 0.92435 0.91533 0.89769 0.89051 0.91001 0.90781 0.90599 0.91401 0.92326 0.91888 0.84333 0.91292 0.95375 0.92521 0.93624 0.96809 0.96580 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.04 -0.37 6.52 -27.88 -0.18 -0.55 16 3 C 0.03 0.37 6.64 -13.45 -0.09 0.28 16 4 N -0.47 -6.24 10.53 -8.05 -0.08 -6.33 16 5 C 0.05 0.70 6.74 -84.22 -0.57 0.13 16 6 C -0.08 -0.80 10.02 36.01 0.36 -0.44 16 7 C -0.19 -2.43 5.47 -35.92 -0.20 -2.62 16 8 C 0.16 1.92 2.89 -68.86 -0.20 1.72 16 9 H 0.10 1.21 6.06 -51.93 -0.31 0.89 16 10 C -0.18 -1.90 9.14 37.16 0.34 -1.56 16 11 N -0.68 -9.89 6.14 -107.94 -0.66 -10.55 16 12 C 0.06 1.01 5.48 -3.82 -0.02 0.99 16 13 C -0.11 -2.20 5.41 -26.73 -0.14 -2.35 16 14 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 15 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 16 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.12 13.29 55.43 0.74 -26.39 16 19 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 S 0.14 1.57 23.07 -107.50 -2.48 -0.91 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.75 6.61 -51.93 -0.34 0.40 16 32 H 0.07 0.74 7.45 -51.93 -0.39 0.35 16 33 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.34 4.65 8.47 -39.29 -0.33 4.32 16 36 H 0.07 1.18 8.06 -51.93 -0.42 0.76 16 37 H 0.03 0.46 7.44 -51.93 -0.39 0.07 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 357.61 15.07 5.39 5.39 Total: -1.00 -31.45 357.61 -10.22 -41.68 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -7.22 Total: -1.49 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -0.88 Total: -18.22 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: -0.01 Total: -43.27 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.48 Total: -0.91 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.45 -10.22 -41.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178640714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.479 kcal (2) G-P(sol) polarization free energy of solvation -31.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds