Wall clock time and date at job start Tue Mar 31 2020 06:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29020 * 124.92028 * 2 1 4 4 C 1.31778 * 117.13108 * 179.97438 * 3 2 1 5 5 C 1.33640 * 114.49678 * 0.02562 * 4 3 2 6 6 C 1.50700 * 126.03570 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.47470 * 89.99918 * 6 5 4 8 8 C 1.46901 * 110.99998 * 76.39038 * 7 6 5 9 9 C 1.46895 * 111.00170 * 200.34773 * 7 6 5 10 10 C 1.53001 * 109.47086 * 86.72904 * 9 7 6 11 11 C 1.53002 * 109.46956 * 294.39065 * 10 9 7 12 12 C 1.53000 * 109.47487 * 54.38755 * 10 9 7 13 13 C 1.52999 * 109.47274 * 174.38970 * 10 9 7 14 14 C 1.50705 * 109.47292 * 179.97438 * 13 10 9 15 15 H 1.07998 * 119.99657 * 0.02562 * 14 13 10 16 16 C 1.37873 * 119.99924 * 180.02562 * 14 13 10 17 17 N 1.31512 * 120.00169 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00060 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46942 * 59.99783 * 18 16 14 20 20 H 1.48495 * 109.47258 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46860 * 299.99818 * 18 16 14 22 22 S 1.70983 * 124.91542 * 179.97438 * 2 1 3 23 23 H 1.08994 * 109.47605 * 270.00068 * 1 2 3 24 24 H 1.09005 * 109.47003 * 30.00362 * 1 2 3 25 25 H 1.09004 * 109.46925 * 150.00128 * 1 2 3 26 26 H 1.07995 * 122.75273 * 180.26435 * 4 3 2 27 27 H 1.09002 * 109.46906 * 209.99756 * 6 5 4 28 28 H 1.09001 * 109.47140 * 329.99545 * 6 5 4 29 29 H 1.09000 * 109.46892 * 64.22783 * 8 7 6 30 30 H 1.09004 * 109.46897 * 184.22451 * 8 7 6 31 31 H 1.09000 * 109.47295 * 304.22326 * 8 7 6 32 32 H 1.09003 * 109.47128 * 206.72676 * 9 7 6 33 33 H 1.09000 * 109.47438 * 326.72708 * 9 7 6 34 34 H 1.08999 * 109.47415 * 70.64596 * 11 10 9 35 35 H 1.09006 * 109.46970 * 190.64427 * 11 10 9 36 36 H 1.09001 * 109.47094 * 310.64408 * 11 10 9 37 37 H 1.09010 * 109.46707 * 65.04958 * 12 10 9 38 38 H 1.08993 * 109.47591 * 185.05130 * 12 10 9 39 39 H 1.09003 * 109.46992 * 305.05862 * 12 10 9 40 40 H 1.08998 * 109.47348 * 299.99961 * 13 10 9 41 41 H 1.09000 * 109.47014 * 60.00011 * 13 10 9 42 42 H 0.97001 * 119.99994 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0579 0.0000 4 6 3.5512 0.8793 0.0005 5 6 3.9354 -0.4007 0.0004 6 6 5.3574 -0.8995 0.0004 7 7 5.8196 -1.0616 1.3854 8 6 5.2569 -2.2768 1.9892 9 6 7.2869 -1.0710 1.4531 10 6 7.8016 0.3658 1.5619 11 6 7.4738 1.1238 0.2740 12 6 7.1288 1.0602 2.7477 13 6 9.3169 0.3501 1.7728 14 6 9.8240 1.7653 1.8794 15 1 9.1343 2.5930 1.8046 16 6 11.1682 2.0032 2.0724 17 7 12.0079 0.9952 2.1640 18 14 11.7967 3.7573 2.2052 19 1 11.1441 4.4310 3.3566 20 1 13.2674 3.7421 2.4098 21 1 11.4779 4.4932 0.9554 22 16 2.4856 -1.4021 0.0006 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 4.2531 1.7000 0.0048 27 1 5.4057 -1.8595 -0.5134 28 1 5.9948 -0.1799 -0.5134 29 1 5.6297 -3.1526 1.4580 30 1 5.5543 -2.3333 3.0364 31 1 4.1695 -2.2463 1.9215 32 1 7.6068 -1.6386 2.3269 33 1 7.6893 -1.5338 0.5519 34 1 6.3995 1.2999 0.2194 35 1 7.9990 2.0790 0.2708 36 1 7.7893 0.5328 -0.5859 37 1 7.4343 0.5742 3.6744 38 1 7.4266 2.1083 2.7717 39 1 6.0460 0.9924 2.6418 40 1 9.5505 -0.1900 2.6903 41 1 9.7962 -0.1445 0.9280 42 1 12.9537 1.1626 2.3001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179384355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:46 Heat of formation + Delta-G solvation = 37.299504 kcal Electronic energy + Delta-G solvation = -20428.302305 eV Core-core repulsion = 17535.005394 eV Total energy + Delta-G solvation = -2893.296911 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.77860 -38.33221 -35.17336 -32.57871 -32.11363 -29.74153 -27.43491 -26.53293 -26.30615 -25.62406 -23.99181 -23.00656 -21.45383 -19.24334 -18.07750 -17.92025 -16.18382 -15.56025 -15.37266 -15.10430 -14.62695 -14.39556 -14.29050 -13.64987 -13.20573 -13.17990 -12.83070 -12.69986 -12.57987 -12.35983 -12.17378 -11.99107 -11.67805 -11.52164 -11.13320 -10.90936 -10.77350 -10.63243 -10.40100 -10.34726 -10.02957 -9.66601 -9.61805 -9.28986 -8.97216 -8.86635 -8.75730 -8.30120 -8.05099 -5.95038 -3.94953 0.67293 1.28118 1.70220 2.84058 3.36040 3.40551 3.43089 4.08869 4.22448 4.51020 4.87868 4.93574 5.09584 5.19940 5.27423 5.34653 5.40962 5.46559 5.59245 5.63361 5.71801 5.82676 5.87750 5.96824 6.01796 6.18826 6.25101 6.30649 6.51773 6.72135 6.78195 6.87871 7.17308 7.20854 7.25604 7.33152 7.44568 7.71403 7.72785 7.86696 8.05289 8.50016 9.10281 9.67829 11.16617 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.031366 B = 0.003738 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.473424 B = 7488.370647 C = 8037.429916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.036 3.964 3 N -0.472 5.472 4 C 0.048 3.952 5 C -0.192 4.192 6 C 0.113 3.887 7 N -0.529 5.529 8 C 0.021 3.979 9 C 0.065 3.935 10 C -0.052 4.052 11 C -0.134 4.134 12 C -0.114 4.114 13 C 0.034 3.966 14 C -0.506 4.506 15 H 0.059 0.941 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.887 3.113 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.278 1.278 22 S 0.097 5.903 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.177 0.823 27 H 0.042 0.958 28 H 0.116 0.884 29 H 0.022 0.978 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.040 0.960 35 H 0.067 0.933 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.014 0.986 41 H 0.012 0.988 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.287 -6.801 -4.712 21.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.242 4.242 3 N -0.187 5.187 4 C -0.102 4.102 5 C -0.313 4.313 6 C -0.017 4.017 7 N -0.253 5.253 8 C -0.128 4.128 9 C -0.062 4.062 10 C -0.053 4.053 11 C -0.191 4.191 12 C -0.172 4.172 13 C -0.004 4.004 14 C -0.545 4.545 15 H 0.077 0.923 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.715 3.285 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.203 1.203 22 S 0.351 5.649 23 H 0.102 0.898 24 H 0.105 0.895 25 H 0.096 0.904 26 H 0.194 0.806 27 H 0.061 0.939 28 H 0.133 0.867 29 H 0.040 0.960 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.032 0.968 41 H 0.030 0.970 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.740 -6.994 -4.413 22.327 hybrid contribution 1.456 0.890 -0.277 1.729 sum -19.283 -6.104 -4.690 20.763 Atomic orbital electron populations 1.20398 0.85533 1.03900 1.03698 1.26949 1.01557 0.91077 1.04575 1.66280 1.05137 1.31524 1.15713 1.21721 0.90659 0.96192 1.01657 1.25915 0.99100 0.95868 1.10417 1.20919 0.88942 1.00749 0.91119 1.61942 1.10040 1.37146 1.16150 1.22498 0.99858 0.90359 1.00055 1.22383 0.84195 0.99240 1.00359 1.20582 0.98238 0.91361 0.95108 1.21991 0.98958 1.01582 0.96598 1.21569 0.98678 1.00153 0.96763 1.19129 0.87487 0.97120 0.96636 1.21199 0.92272 0.92503 1.48484 0.92305 1.25006 0.97211 0.96587 0.95745 1.69953 1.03070 1.30307 1.50514 0.86735 0.77631 0.85514 0.78587 1.20309 1.21477 1.20336 1.83852 0.98657 1.13169 1.69247 0.89797 0.89455 0.90386 0.80572 0.93939 0.86662 0.95953 0.91120 0.92059 0.91315 0.94608 0.94090 0.91382 0.94410 0.94418 0.93056 0.93448 0.96776 0.96979 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.46 36.00 0.38 -0.18 16 2 C 0.04 0.41 7.39 -13.46 -0.10 0.31 16 3 N -0.47 -6.52 10.54 -11.87 -0.13 -6.64 16 4 C 0.05 0.66 11.24 -19.19 -0.22 0.44 16 5 C -0.19 -2.46 5.65 -35.92 -0.20 -2.67 16 6 C 0.11 1.48 4.66 -4.97 -0.02 1.46 16 7 N -0.53 -7.65 3.41 -244.37 -0.83 -8.48 16 8 C 0.02 0.26 9.24 60.07 0.56 0.82 16 9 C 0.07 1.09 4.23 -3.83 -0.02 1.07 16 10 C -0.05 -1.02 0.61 -154.51 -0.09 -1.12 16 11 C -0.13 -2.44 6.81 37.16 0.25 -2.19 16 12 C -0.11 -2.22 7.97 37.16 0.30 -1.92 16 13 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 14 C -0.51 -13.75 7.56 -34.44 -0.26 -14.01 16 15 H 0.06 1.56 5.75 -52.49 -0.30 1.26 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 18 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 S 0.10 1.04 21.98 -107.50 -2.36 -1.32 16 23 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.18 2.35 7.28 -52.49 -0.38 1.97 16 27 H 0.04 0.52 7.99 -51.93 -0.41 0.11 16 28 H 0.12 1.58 4.28 -51.93 -0.22 1.36 16 29 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.88 8.06 -51.93 -0.42 0.46 16 31 H 0.06 0.72 6.45 -51.93 -0.34 0.39 16 32 H 0.07 1.17 7.72 -51.93 -0.40 0.77 16 33 H 0.04 0.59 7.79 -51.93 -0.40 0.19 16 34 H 0.04 0.65 5.60 -51.93 -0.29 0.36 16 35 H 0.07 1.38 6.34 -51.93 -0.33 1.05 16 36 H 0.04 0.65 7.54 -51.93 -0.39 0.26 16 37 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.05 1.06 6.79 -51.93 -0.35 0.71 16 39 H 0.05 0.85 7.28 -51.93 -0.38 0.47 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 339.60 15.07 5.12 5.12 Total: -1.00 -30.21 339.60 -8.85 -39.05 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -6.72 Total: -2.48 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 0.36 Total: -15.79 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: -0.22 Total: -41.17 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.36 Total: -1.32 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.21 -8.85 -39.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179384355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.352 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds