Wall clock time and date at job start Tue Mar 31 2020 06:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29020 * 124.92028 * 2 1 4 4 C 1.31778 * 117.13108 * 179.97438 * 3 2 1 5 5 C 1.33640 * 114.49678 * 0.02562 * 4 3 2 6 6 C 1.50700 * 126.03570 * 179.97438 * 5 4 3 7 7 N 1.46902 * 109.47470 * 89.99918 * 6 5 4 8 8 C 1.46901 * 110.99998 * 76.39038 * 7 6 5 9 9 C 1.46895 * 111.00170 * 200.34773 * 7 6 5 10 10 C 1.53001 * 109.47086 * 86.72904 * 9 7 6 11 11 C 1.53002 * 109.46956 * 294.39065 * 10 9 7 12 12 C 1.53000 * 109.47487 * 54.38755 * 10 9 7 13 13 C 1.52999 * 109.47274 * 174.38970 * 10 9 7 14 14 C 1.50705 * 109.47292 * 179.97438 * 13 10 9 15 15 H 1.07998 * 119.99657 * 0.02562 * 14 13 10 16 16 C 1.37873 * 119.99924 * 180.02562 * 14 13 10 17 17 N 1.31512 * 120.00169 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00060 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46942 * 59.99783 * 18 16 14 20 20 H 1.48495 * 109.47258 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46860 * 299.99818 * 18 16 14 22 22 S 1.70983 * 124.91542 * 179.97438 * 2 1 3 23 23 H 1.08994 * 109.47605 * 270.00068 * 1 2 3 24 24 H 1.09005 * 109.47003 * 30.00362 * 1 2 3 25 25 H 1.09004 * 109.46925 * 150.00128 * 1 2 3 26 26 H 1.07995 * 122.75273 * 180.26435 * 4 3 2 27 27 H 1.09002 * 109.46906 * 209.99756 * 6 5 4 28 28 H 1.09001 * 109.47140 * 329.99545 * 6 5 4 29 29 H 1.09000 * 109.46892 * 64.22783 * 8 7 6 30 30 H 1.09004 * 109.46897 * 184.22451 * 8 7 6 31 31 H 1.09000 * 109.47295 * 304.22326 * 8 7 6 32 32 H 1.09003 * 109.47128 * 206.72676 * 9 7 6 33 33 H 1.09000 * 109.47438 * 326.72708 * 9 7 6 34 34 H 1.08999 * 109.47415 * 70.64596 * 11 10 9 35 35 H 1.09006 * 109.46970 * 190.64427 * 11 10 9 36 36 H 1.09001 * 109.47094 * 310.64408 * 11 10 9 37 37 H 1.09010 * 109.46707 * 65.04958 * 12 10 9 38 38 H 1.08993 * 109.47591 * 185.05130 * 12 10 9 39 39 H 1.09003 * 109.46992 * 305.05862 * 12 10 9 40 40 H 1.08998 * 109.47348 * 299.99961 * 13 10 9 41 41 H 1.09000 * 109.47014 * 60.00011 * 13 10 9 42 42 H 0.97001 * 119.99994 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0579 0.0000 4 6 3.5512 0.8793 0.0005 5 6 3.9354 -0.4007 0.0004 6 6 5.3574 -0.8995 0.0004 7 7 5.8196 -1.0616 1.3854 8 6 5.2569 -2.2768 1.9892 9 6 7.2869 -1.0710 1.4531 10 6 7.8016 0.3658 1.5619 11 6 7.4738 1.1238 0.2740 12 6 7.1288 1.0602 2.7477 13 6 9.3169 0.3501 1.7728 14 6 9.8240 1.7653 1.8794 15 1 9.1343 2.5930 1.8046 16 6 11.1682 2.0032 2.0724 17 7 12.0079 0.9952 2.1640 18 14 11.7967 3.7573 2.2052 19 1 11.1441 4.4310 3.3566 20 1 13.2674 3.7421 2.4098 21 1 11.4779 4.4932 0.9554 22 16 2.4856 -1.4021 0.0006 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 4.2531 1.7000 0.0048 27 1 5.4057 -1.8595 -0.5134 28 1 5.9948 -0.1799 -0.5134 29 1 5.6297 -3.1526 1.4580 30 1 5.5543 -2.3333 3.0364 31 1 4.1695 -2.2463 1.9215 32 1 7.6068 -1.6386 2.3269 33 1 7.6893 -1.5338 0.5519 34 1 6.3995 1.2999 0.2194 35 1 7.9990 2.0790 0.2708 36 1 7.7893 0.5328 -0.5859 37 1 7.4343 0.5742 3.6744 38 1 7.4266 2.1083 2.7717 39 1 6.0460 0.9924 2.6418 40 1 9.5505 -0.1900 2.6903 41 1 9.7962 -0.1445 0.9280 42 1 12.9537 1.1626 2.3001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179384355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:45 Heat of formation + Delta-G solvation = 19.893670 kcal Electronic energy + Delta-G solvation = -20429.057078 eV Core-core repulsion = 17535.005394 eV Total energy + Delta-G solvation = -2894.051684 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.74708 -39.64915 -36.67903 -34.30791 -33.30005 -30.62635 -29.25879 -28.05242 -27.67375 -26.75940 -25.35210 -24.39133 -22.73483 -20.18656 -19.54971 -18.95908 -18.27972 -16.75296 -16.57441 -16.36157 -16.08024 -15.55486 -15.41575 -14.80295 -14.56143 -14.43305 -14.28567 -13.95256 -13.69336 -13.52017 -13.32688 -13.17727 -12.95648 -12.77158 -12.66676 -12.55175 -12.39164 -12.28070 -12.16214 -11.95315 -11.67881 -11.29429 -10.85572 -10.68349 -10.56002 -10.48007 -10.18369 -9.65660 -9.21198 -8.12560 -6.18823 -0.22540 0.41838 0.80099 1.41425 1.43234 1.50472 1.88416 2.44663 3.07404 3.21457 3.32195 3.88626 4.02859 4.14118 4.20380 4.26333 4.38273 4.47862 4.58595 4.64960 4.68511 4.70032 4.76647 4.84793 4.88819 4.98700 5.01195 5.06083 5.09605 5.23298 5.24138 5.31732 5.54925 5.56965 5.62515 5.68111 5.88182 5.95360 6.08702 6.13815 6.39979 6.82698 6.96100 7.48190 8.99450 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.031366 B = 0.003738 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.473424 B = 7488.370647 C = 8037.429916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.035 3.965 3 N -0.506 5.506 4 C 0.036 3.964 5 C -0.210 4.210 6 C 0.116 3.884 7 N -0.536 5.536 8 C 0.022 3.978 9 C 0.077 3.923 10 C -0.049 4.049 11 C -0.125 4.125 12 C -0.103 4.103 13 C 0.041 3.959 14 C -0.513 4.513 15 H 0.064 0.936 16 C -0.002 4.002 17 N -0.937 5.937 18 Si 0.952 3.048 19 H -0.270 1.270 20 H -0.288 1.288 21 H -0.268 1.268 22 S 0.141 5.859 23 H 0.097 0.903 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.171 0.829 27 H 0.055 0.945 28 H 0.107 0.893 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.066 0.934 35 H 0.043 0.957 36 H 0.043 0.957 37 H 0.027 0.973 38 H 0.034 0.966 39 H 0.065 0.935 40 H -0.015 1.015 41 H -0.014 1.014 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.585 -6.978 -5.127 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.243 4.243 3 N -0.221 5.221 4 C -0.115 4.115 5 C -0.331 4.331 6 C -0.014 4.014 7 N -0.259 5.259 8 C -0.126 4.126 9 C -0.051 4.051 10 C -0.049 4.049 11 C -0.182 4.182 12 C -0.160 4.160 13 C 0.004 3.996 14 C -0.551 4.551 15 H 0.082 0.918 16 C -0.199 4.199 17 N -0.579 5.579 18 Si 0.778 3.222 19 H -0.195 1.195 20 H -0.213 1.213 21 H -0.193 1.193 22 S 0.395 5.605 23 H 0.116 0.884 24 H 0.108 0.892 25 H 0.120 0.880 26 H 0.188 0.812 27 H 0.073 0.927 28 H 0.125 0.875 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.084 0.916 40 H 0.003 0.997 41 H 0.005 0.995 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -23.064 -7.175 -4.833 24.633 hybrid contribution 2.071 0.880 -0.155 2.255 sum -20.993 -6.296 -4.988 22.477 Atomic orbital electron populations 1.20609 0.82931 1.05254 1.04943 1.27656 1.03192 0.90909 1.02510 1.66319 1.05307 1.32896 1.17592 1.21748 0.90998 0.96535 1.02174 1.25861 0.99738 0.96263 1.11242 1.20841 0.89160 1.01145 0.90234 1.61834 1.08198 1.38569 1.17340 1.22524 1.00321 0.89806 0.99992 1.22083 0.86030 0.96781 1.00200 1.20438 0.94638 0.93863 0.95988 1.21893 1.00298 1.00071 0.95968 1.21451 0.99621 0.98780 0.96165 1.18999 0.91219 0.95407 0.94003 1.21589 0.92522 0.93697 1.47339 0.91824 1.25868 0.97685 1.00693 0.95665 1.70091 1.03306 1.32538 1.51938 0.85688 0.76918 0.80590 0.79001 1.19529 1.21337 1.19313 1.83647 0.96804 1.11769 1.68307 0.88450 0.89171 0.87979 0.81180 0.92731 0.87523 0.94871 0.91180 0.91016 0.91909 0.94495 0.91555 0.93752 0.93792 0.95413 0.94723 0.91637 0.99705 0.99535 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.46 71.24 0.75 -0.16 16 2 C 0.03 0.70 7.39 88.52 0.65 1.36 16 3 N -0.51 -13.24 10.54 -191.45 -2.02 -15.26 16 4 C 0.04 0.95 11.24 83.66 0.94 1.89 16 5 C -0.21 -4.99 5.65 24.64 0.14 -4.85 16 6 C 0.12 2.84 4.66 85.56 0.40 3.24 16 7 N -0.54 -14.63 3.41 -927.04 -3.17 -17.79 16 8 C 0.02 0.49 9.24 127.69 1.18 1.67 16 9 C 0.08 2.53 4.23 86.30 0.37 2.89 16 10 C -0.05 -1.91 0.61 -52.18 -0.03 -1.94 16 11 C -0.13 -4.52 6.81 71.98 0.49 -4.03 16 12 C -0.10 -3.98 7.97 71.98 0.57 -3.41 16 13 C 0.04 2.12 4.04 29.85 0.12 2.24 16 14 C -0.51 -28.42 7.56 25.60 0.19 -28.23 16 15 H 0.06 3.40 5.75 -2.91 -0.02 3.39 16 16 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 17 N -0.94 -57.25 13.29 21.45 0.28 -56.96 16 18 Si 0.95 44.71 29.54 68.60 2.03 46.74 16 19 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 S 0.14 2.62 21.98 -56.49 -1.24 1.38 16 23 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 25 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.17 4.45 7.28 -2.91 -0.02 4.43 16 27 H 0.05 1.21 7.99 -2.39 -0.02 1.19 16 28 H 0.11 2.78 4.28 -2.39 -0.01 2.77 16 29 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 1.61 8.06 -2.39 -0.02 1.59 16 31 H 0.07 1.49 6.45 -2.39 -0.02 1.47 16 32 H 0.06 2.13 7.72 -2.39 -0.02 2.11 16 33 H 0.04 1.20 7.79 -2.39 -0.02 1.18 16 34 H 0.07 2.05 5.60 -2.39 -0.01 2.03 16 35 H 0.04 1.79 6.34 -2.38 -0.02 1.78 16 36 H 0.04 1.50 7.54 -2.39 -0.02 1.48 16 37 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.03 1.42 6.79 -2.39 -0.02 1.41 16 39 H 0.06 2.29 7.28 -2.39 -0.02 2.27 16 40 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 41 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 42 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -65.55 339.60 3.11 -62.44 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 1.00 Total: 8.47 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: 6.23 Total: -29.01 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -4.90 Total: -90.02 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -1.24 Total: 1.38 kcal Total: -65.55 3.11 -62.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179384355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.330 kcal (2) G-P(sol) polarization free energy of solvation -65.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds