Wall clock time and date at job start Tue Mar 31 2020 06:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31776 * 122.74845 * 2 1 4 4 C 1.29034 * 117.12511 * 179.72878 * 3 2 1 5 5 S 1.70971 * 110.16530 * 0.02562 * 4 3 2 6 6 C 1.33635 * 122.74859 * 179.71040 * 2 1 3 7 7 C 1.50701 * 126.04012 * 0.25071 * 6 2 1 8 8 N 1.46903 * 109.46975 * 90.00202 * 7 6 2 9 9 C 1.46905 * 110.99870 * 293.95042 * 8 7 6 10 10 C 1.46900 * 110.99735 * 170.00329 * 8 7 6 11 11 C 1.53005 * 109.46881 * 209.38790 * 10 8 7 12 12 C 1.53001 * 109.47061 * 300.29740 * 11 10 8 13 13 C 1.52995 * 109.46946 * 60.30084 * 11 10 8 14 14 C 1.53002 * 109.47178 * 180.29828 * 11 10 8 15 15 C 1.50696 * 109.47003 * 179.97438 * 14 11 10 16 16 H 1.07990 * 120.00399 * 0.02562 * 15 14 11 17 17 C 1.37879 * 119.99916 * 179.97438 * 15 14 11 18 18 N 1.31524 * 119.99884 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00331 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46693 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47124 * 120.00053 * 19 17 15 22 22 H 1.48495 * 109.47313 * 239.99998 * 19 17 15 23 23 H 1.09004 * 109.47075 * 90.02539 * 1 2 3 24 24 H 1.09000 * 109.47015 * 210.02092 * 1 2 3 25 25 H 1.08992 * 109.47074 * 330.02213 * 1 2 3 26 26 H 1.08000 * 124.91520 * 180.02562 * 4 3 2 27 27 H 1.09004 * 109.46874 * 209.99740 * 7 6 2 28 28 H 1.08995 * 109.47375 * 330.00091 * 7 6 2 29 29 H 1.09001 * 109.46876 * 67.79442 * 9 8 7 30 30 H 1.08992 * 109.46906 * 187.79082 * 9 8 7 31 31 H 1.08999 * 109.47132 * 307.79803 * 9 8 7 32 32 H 1.08995 * 109.47125 * 329.38539 * 10 8 7 33 33 H 1.09000 * 109.47562 * 89.38763 * 10 8 7 34 34 H 1.09006 * 109.46569 * 68.63795 * 12 11 10 35 35 H 1.09002 * 109.46693 * 188.63355 * 12 11 10 36 36 H 1.08994 * 109.47351 * 308.63551 * 12 11 10 37 37 H 1.09001 * 109.47663 * 59.99807 * 13 11 10 38 38 H 1.09004 * 109.47459 * 179.97438 * 13 11 10 39 39 H 1.09002 * 109.47244 * 299.99752 * 13 11 10 40 40 H 1.09003 * 109.47339 * 300.00108 * 14 11 10 41 41 H 1.08999 * 109.46885 * 59.99846 * 14 11 10 42 42 H 0.97001 * 119.99816 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2198 1.1083 0.0000 4 6 3.5040 0.9819 0.0054 5 16 3.9332 -0.6731 0.0107 6 6 2.2299 -1.1239 0.0057 7 6 1.6847 -2.5288 0.0074 8 7 1.5127 -2.9891 -1.3770 9 6 0.4731 -2.2116 -2.0649 10 6 1.2106 -4.4260 -1.4203 11 6 1.7393 -5.0190 -2.7279 12 6 1.0738 -4.3158 -3.9127 13 6 3.2544 -4.8202 -2.8022 14 6 1.4181 -6.5142 -2.7765 15 6 1.9383 -7.0981 -4.0647 16 1 2.4473 -6.4662 -4.7772 17 6 1.7651 -8.4394 -4.3331 18 7 1.1455 -9.2091 -3.4650 19 14 2.4105 -9.1634 -5.9295 20 1 3.0644 -8.0960 -6.7284 21 1 3.3987 -10.2294 -5.6257 22 1 1.2820 -9.7406 -6.7031 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8901 0.5135 26 1 4.2059 1.8026 0.0065 27 1 2.3811 -3.1882 0.5256 28 1 0.7217 -2.5442 0.5177 29 1 0.8171 -1.1864 -2.2018 30 1 0.2686 -2.6592 -3.0374 31 1 -0.4374 -2.2124 -1.4657 32 1 1.6885 -4.9234 -0.5764 33 1 0.1319 -4.5724 -1.3649 34 1 1.4246 -3.2851 -3.9670 35 1 1.3311 -4.8362 -4.8352 36 1 -0.0079 -4.3249 -3.7798 37 1 3.7285 -5.3212 -1.9582 38 1 3.6312 -5.2431 -3.7335 39 1 3.4833 -3.7551 -2.7676 40 1 1.8921 -7.0153 -1.9325 41 1 0.3387 -6.6558 -2.7235 42 1 1.0234 -10.1526 -3.6540 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179430142.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:18 Heat of formation + Delta-G solvation = 42.288178 kcal Electronic energy + Delta-G solvation = -20556.851888 eV Core-core repulsion = 17663.771302 eV Total energy + Delta-G solvation = -2893.080586 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.10045 -38.29042 -35.30675 -32.52940 -31.69492 -29.46143 -27.52472 -26.96767 -26.05310 -25.46195 -24.48625 -23.08963 -21.39874 -18.86456 -18.23142 -17.79367 -16.23187 -15.92794 -15.76634 -15.07514 -14.55644 -14.22656 -14.10015 -13.63086 -13.18518 -12.92844 -12.86315 -12.69112 -12.54170 -12.38149 -12.02676 -11.99078 -11.87224 -11.16248 -11.08971 -10.88426 -10.74607 -10.60885 -10.39456 -10.35900 -9.98294 -9.71428 -9.59848 -9.36112 -8.98191 -8.86008 -8.78617 -8.31406 -8.00606 -5.96070 -3.95749 0.63943 1.32874 1.73029 2.68824 3.32680 3.40715 3.44339 4.11637 4.22659 4.50281 4.80127 4.95697 5.05847 5.23315 5.39079 5.39972 5.45541 5.54624 5.59320 5.67391 5.72999 5.79389 5.92447 6.03712 6.11955 6.20700 6.24993 6.31379 6.56394 6.70633 6.80374 6.86386 7.18734 7.20427 7.25986 7.34097 7.45487 7.63358 7.71376 7.86064 8.04642 8.49484 9.09921 9.67080 11.15646 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.033652 B = 0.003655 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.852111 B = 7659.020276 C = 7954.405579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.055 3.945 3 N -0.470 5.470 4 C 0.004 3.996 5 S 0.142 5.858 6 C -0.197 4.197 7 C 0.127 3.873 8 N -0.528 5.528 9 C 0.002 3.998 10 C 0.065 3.935 11 C -0.050 4.050 12 C -0.132 4.132 13 C -0.116 4.116 14 C 0.033 3.967 15 C -0.505 4.505 16 H 0.060 0.940 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.886 3.114 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.286 1.286 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.195 0.805 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.022 0.978 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.063 0.937 36 H 0.037 0.963 37 H 0.036 0.964 38 H 0.054 0.946 39 H 0.043 0.957 40 H 0.014 0.986 41 H 0.012 0.988 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.783 17.990 8.238 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.078 4.078 3 N -0.184 5.184 4 C -0.294 4.294 5 S 0.396 5.604 6 C -0.318 4.318 7 C -0.002 4.002 8 N -0.251 5.251 9 C -0.146 4.146 10 C -0.062 4.062 11 C -0.051 4.051 12 C -0.189 4.189 13 C -0.173 4.173 14 C -0.005 4.005 15 C -0.543 4.543 16 H 0.078 0.922 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.715 3.285 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.212 1.212 23 H 0.096 0.904 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.212 0.788 27 H 0.103 0.897 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.111 0.889 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.032 0.968 41 H 0.030 0.970 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.935 17.918 8.025 19.851 hybrid contribution -1.217 -0.558 -0.408 1.400 sum 1.718 17.360 7.617 19.035 Atomic orbital electron populations 1.20481 0.87459 1.02881 1.03023 1.20161 0.98050 0.86278 1.03314 1.66164 1.05131 1.31676 1.15390 1.28222 0.95288 1.00484 1.05421 1.84107 1.07119 1.02509 1.66679 1.25655 0.95108 1.00364 1.10717 1.20503 0.99415 0.88882 0.91447 1.62014 1.45994 1.04555 1.12586 1.23062 0.92043 0.98616 1.00840 1.22381 0.98534 0.85306 1.00019 1.20551 0.95298 0.97639 0.91603 1.21989 0.98499 0.98649 0.99771 1.21594 0.95243 0.99350 1.01118 1.19135 0.96481 0.87762 0.97089 1.21275 1.35951 0.93450 1.03629 0.92198 1.25014 0.95576 0.97429 0.96584 1.69980 1.42967 1.05605 1.35257 0.86619 0.78618 0.79210 0.84070 1.19756 1.21176 1.21204 0.90418 0.90932 0.91002 0.78779 0.89652 0.92890 0.92218 0.88856 0.95981 0.91708 0.94542 0.93639 0.91811 0.94364 0.94494 0.92705 0.93802 0.96788 0.96952 0.93251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 8.55 36.01 0.31 -0.49 16 2 C 0.05 0.66 5.95 -84.23 -0.50 0.16 16 3 N -0.47 -5.90 10.53 -11.90 -0.13 -6.02 16 4 C 0.00 0.04 12.23 51.59 0.63 0.67 16 5 S 0.14 1.51 23.22 -107.50 -2.50 -0.98 16 6 C -0.20 -2.38 5.50 -35.92 -0.20 -2.57 16 7 C 0.13 1.57 5.16 -4.97 -0.03 1.54 16 8 N -0.53 -7.50 3.77 -244.36 -0.92 -8.42 16 9 C 0.00 0.03 7.13 60.07 0.43 0.46 16 10 C 0.06 1.07 4.24 -3.82 -0.02 1.05 16 11 C -0.05 -0.98 0.60 -154.51 -0.09 -1.08 16 12 C -0.13 -2.45 6.67 37.16 0.25 -2.21 16 13 C -0.12 -2.22 8.06 37.16 0.30 -1.92 16 14 C 0.03 0.81 4.04 -27.88 -0.11 0.70 16 15 C -0.50 -13.68 7.53 -34.44 -0.26 -13.94 16 16 H 0.06 1.59 5.72 -52.49 -0.30 1.29 16 17 C 0.05 1.53 5.46 -17.81 -0.10 1.43 16 18 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 19 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H 0.08 0.76 6.62 -51.93 -0.34 0.41 16 24 H 0.07 0.66 6.69 -51.93 -0.35 0.32 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.20 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.09 1.03 7.79 -51.93 -0.40 0.63 16 28 H 0.05 0.60 6.65 -51.93 -0.35 0.26 16 29 H 0.06 0.77 5.97 -51.93 -0.31 0.46 16 30 H 0.09 1.31 3.89 -51.93 -0.20 1.11 16 31 H 0.02 0.26 7.36 -51.93 -0.38 -0.12 16 32 H 0.06 1.07 7.57 -51.93 -0.39 0.67 16 33 H 0.04 0.61 7.85 -51.93 -0.41 0.20 16 34 H 0.04 0.76 6.21 -51.93 -0.32 0.44 16 35 H 0.06 1.31 6.38 -51.93 -0.33 0.98 16 36 H 0.04 0.68 7.47 -51.93 -0.39 0.29 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 39 H 0.04 0.77 7.61 -51.93 -0.40 0.38 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 332.12 15.07 5.01 5.01 Total: -1.00 -30.15 332.12 -8.68 -38.83 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -6.47 Total: -2.77 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 0.61 Total: -16.19 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: -0.31 Total: -40.37 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.50 Total: -0.98 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.15 -8.68 -38.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179430142.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.118 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds