Wall clock time and date at job start Tue Mar 31 2020 06:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33635 * 126.03763 * 2 1 4 4 N 1.31788 * 114.49627 * 179.97438 * 3 2 1 5 5 C 1.29019 * 117.12556 * 359.97438 * 4 3 2 6 6 C 1.50703 * 124.91293 * 179.97438 * 5 4 3 7 7 N 1.46909 * 109.46875 * 90.00695 * 6 5 4 8 8 C 1.46906 * 110.99893 * 159.34683 * 7 6 5 9 9 C 1.50697 * 109.46830 * 190.98339 * 8 7 6 10 10 H 1.07996 * 120.00146 * 355.04555 * 9 8 7 11 11 C 1.37875 * 119.99830 * 175.04552 * 9 8 7 12 12 N 1.31513 * 120.00211 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99934 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46995 * 59.99860 * 13 11 9 15 15 H 1.48502 * 109.46771 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47224 * 299.99790 * 13 11 9 17 17 C 1.46902 * 110.99686 * 283.29737 * 7 6 5 18 18 C 1.52994 * 109.47302 * 314.14222 * 17 7 6 19 19 C 1.53002 * 109.47536 * 84.36731 * 18 17 7 20 20 C 1.53005 * 109.47327 * 204.37129 * 18 17 7 21 21 C 1.53008 * 109.47095 * 324.37049 * 18 17 7 22 22 S 1.70969 * 110.16969 * 0.02562 * 5 4 3 23 23 H 1.09003 * 109.46826 * 90.02463 * 1 2 3 24 24 H 1.08999 * 109.47910 * 210.02926 * 1 2 3 25 25 H 1.09000 * 109.47237 * 330.03356 * 1 2 3 26 26 H 1.07998 * 122.75450 * 359.72801 * 3 2 1 27 27 H 1.09001 * 109.47209 * 209.99906 * 6 5 4 28 28 H 1.08993 * 109.47988 * 330.00513 * 6 5 4 29 29 H 1.08999 * 109.46977 * 310.98285 * 8 7 6 30 30 H 1.09000 * 109.46871 * 70.98542 * 8 7 6 31 31 H 0.96996 * 120.00203 * 180.02562 * 12 11 9 32 32 H 1.09002 * 109.46890 * 74.13813 * 17 7 6 33 33 H 1.09000 * 109.46899 * 194.13592 * 17 7 6 34 34 H 1.09000 * 109.46656 * 60.48030 * 19 18 17 35 35 H 1.08994 * 109.47546 * 180.48341 * 19 18 17 36 36 H 1.08996 * 109.47352 * 300.48647 * 19 18 17 37 37 H 1.08996 * 109.47059 * 59.99630 * 20 18 17 38 38 H 1.08994 * 109.46970 * 180.02562 * 20 18 17 39 39 H 1.08998 * 109.46471 * 299.99740 * 20 18 17 40 40 H 1.08995 * 109.47304 * 52.65661 * 21 18 17 41 41 H 1.08999 * 109.46795 * 172.66063 * 21 18 17 42 42 H 1.08997 * 109.46834 * 292.65304 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0806 0.0000 4 7 3.5844 0.8169 0.0005 5 6 3.9310 -0.4258 0.0015 6 6 5.3531 -0.9246 0.0017 7 7 5.8153 -1.0857 1.3868 8 6 6.9625 -2.0007 1.4560 9 6 7.2379 -2.3531 2.8950 10 1 6.6751 -1.8777 3.6846 11 6 8.2085 -3.2824 3.2036 12 7 8.8937 -3.8617 2.2420 13 14 8.5504 -3.7188 4.9875 14 1 7.3179 -4.2678 5.6077 15 1 9.6308 -4.7357 5.0499 16 1 8.9740 -2.5001 5.7227 17 6 6.1421 0.2146 1.9873 18 6 6.9777 1.0353 1.0030 19 6 6.0494 1.7607 0.0268 20 6 7.8105 2.0620 1.7734 21 6 7.9091 0.1040 0.2244 22 16 2.5436 -1.4248 0.0011 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3635 -0.8897 0.5143 25 1 -0.3634 0.8903 0.5133 26 1 1.9025 2.0874 -0.0043 27 1 5.4013 -1.8851 -0.5114 28 1 5.9906 -0.2056 -0.5127 29 1 6.7375 -2.9085 0.8962 30 1 7.8396 -1.5168 1.0261 31 1 9.5762 -4.5158 2.4591 32 1 5.2210 0.7504 2.2169 33 1 6.7100 0.0587 2.9045 34 1 5.3916 2.4305 0.5807 35 1 6.6450 2.3386 -0.6797 36 1 5.4500 1.0298 -0.5158 37 1 8.4719 1.5452 2.4687 38 1 8.4054 2.6470 1.0721 39 1 7.1469 2.7254 2.3279 40 1 7.3275 -0.7045 -0.2183 41 1 8.4088 0.6663 -0.5643 42 1 8.6546 -0.3132 0.9013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180505063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:26 Heat of formation + Delta-G solvation = 103.144538 kcal Electronic energy + Delta-G solvation = -21227.603230 eV Core-core repulsion = 18337.161575 eV Total energy + Delta-G solvation = -2890.441656 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.17587 -38.69519 -33.89560 -33.02434 -32.07393 -29.37913 -27.71778 -26.65606 -26.35364 -25.54980 -24.10465 -22.71905 -20.54378 -19.03495 -18.52422 -17.56935 -16.36939 -15.41862 -15.04041 -14.99186 -14.52023 -14.06147 -13.92666 -13.70303 -13.20809 -13.01788 -12.76175 -12.62548 -12.55824 -12.07895 -11.82231 -11.26452 -11.22167 -11.02054 -10.98823 -10.90675 -10.83100 -10.71879 -10.47479 -10.19404 -10.01111 -9.78996 -9.65167 -9.22356 -8.93121 -8.87651 -8.50499 -8.35688 -6.99019 -5.99582 -3.98417 0.97785 1.63024 2.09713 3.08705 3.34914 3.39028 3.42438 4.41584 4.49974 5.00635 5.12156 5.16381 5.35673 5.36703 5.39729 5.41256 5.47218 5.57312 5.72423 5.76287 5.94442 5.99788 6.09392 6.12248 6.17918 6.31500 6.33937 6.37817 6.46595 6.56669 6.67442 6.75663 6.92792 6.99607 7.10121 7.29298 7.45791 7.81469 8.02472 8.10230 8.25432 8.56475 9.06453 9.63434 11.10731 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.017641 B = 0.005652 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.819143 B = 4952.398755 C = 5891.568926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.248 4.248 3 C 0.032 3.968 4 N -0.470 5.470 5 C 0.082 3.918 6 C 0.079 3.921 7 N -0.524 5.524 8 C 0.153 3.847 9 C -0.501 4.501 10 H 0.059 0.941 11 C 0.057 3.943 12 N -0.899 5.899 13 Si 0.894 3.106 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.278 1.278 17 C 0.074 3.926 18 C -0.100 4.100 19 C -0.153 4.153 20 C -0.133 4.133 21 C -0.162 4.162 22 S 0.128 5.872 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.166 0.834 27 H 0.082 0.918 28 H 0.109 0.891 29 H 0.028 0.972 30 H 0.041 0.959 31 H 0.261 0.739 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.030 0.970 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.036 0.964 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.369 8.855 -6.519 15.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.370 4.370 3 C -0.120 4.120 4 N -0.185 5.185 5 C -0.196 4.196 6 C -0.051 4.051 7 N -0.247 5.247 8 C 0.029 3.971 9 C -0.539 4.539 10 H 0.077 0.923 11 C -0.144 4.144 12 N -0.539 5.539 13 Si 0.722 3.278 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.204 1.204 17 C -0.054 4.054 18 C -0.102 4.102 19 C -0.209 4.209 20 C -0.191 4.191 21 C -0.218 4.218 22 S 0.383 5.617 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.183 0.817 27 H 0.100 0.900 28 H 0.125 0.875 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.049 0.951 36 H 0.113 0.887 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.331 7.794 -6.269 15.114 hybrid contribution 0.509 0.922 0.681 1.254 sum -10.822 8.716 -5.588 14.977 Atomic orbital electron populations 1.20134 0.87474 1.02954 1.02309 1.25906 1.01252 0.95920 1.13912 1.21696 0.87640 0.99579 1.03059 1.66611 1.16505 1.18445 1.16919 1.27304 1.01078 0.90776 1.00431 1.21742 0.87032 1.01494 0.94878 1.62267 1.38655 1.11165 1.12652 1.20748 0.87401 0.90639 0.98336 1.21091 1.18108 1.22654 0.92084 0.92259 1.24909 0.96205 0.96146 0.97158 1.69928 1.24018 1.28374 1.31619 0.86628 0.77778 0.78085 0.85316 1.20322 1.21436 1.20372 1.22163 0.97447 0.88424 0.97396 1.21192 0.96019 0.96112 0.96860 1.22677 0.98366 1.01110 0.98772 1.21794 0.99297 0.98352 0.99615 1.22778 1.00107 0.99144 0.99808 1.84060 0.98810 1.11271 1.67573 0.91141 0.91430 0.90775 0.81726 0.90001 0.87468 0.95420 0.94141 0.92978 0.92693 0.89918 0.92824 0.95074 0.88739 0.92553 0.93655 0.93378 0.90587 0.94450 0.90504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.42 36.00 0.38 -0.25 16 2 C -0.25 -3.14 6.60 -35.92 -0.24 -3.38 16 3 C 0.03 0.43 11.25 -19.18 -0.22 0.21 16 4 N -0.47 -7.44 7.23 -11.87 -0.09 -7.53 16 5 C 0.08 1.36 6.17 -13.46 -0.08 1.27 16 6 C 0.08 1.41 4.01 -4.97 -0.02 1.39 16 7 N -0.52 -10.93 4.61 -237.51 -1.09 -12.03 16 8 C 0.15 3.73 4.03 -4.97 -0.02 3.71 16 9 C -0.50 -13.63 8.37 -34.44 -0.29 -13.92 16 10 H 0.06 1.63 7.17 -52.49 -0.38 1.26 16 11 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 12 N -0.90 -25.95 13.29 55.43 0.74 -25.21 16 13 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 C 0.07 1.46 4.77 -3.83 -0.02 1.44 16 18 C -0.10 -1.72 0.77 -154.50 -0.12 -1.84 16 19 C -0.15 -2.42 6.59 37.16 0.25 -2.18 16 20 C -0.13 -2.10 8.35 37.16 0.31 -1.79 16 21 C -0.16 -2.93 6.21 37.16 0.23 -2.70 16 22 S 0.13 1.87 23.18 -107.50 -2.49 -0.63 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 27 H 0.08 1.43 7.70 -51.93 -0.40 1.03 16 28 H 0.11 1.85 2.39 -51.93 -0.12 1.72 16 29 H 0.03 0.74 7.80 -51.93 -0.40 0.33 16 30 H 0.04 1.00 3.19 -52.03 -0.17 0.84 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.05 1.08 7.80 -51.93 -0.40 0.67 16 33 H 0.08 1.79 6.32 -51.93 -0.33 1.47 16 34 H 0.05 0.86 7.82 -51.93 -0.41 0.46 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 1.55 2.54 -51.93 -0.13 1.41 16 37 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 1.42 3.29 -51.93 -0.17 1.25 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 1.59 6.66 -51.93 -0.35 1.24 16 LS Contribution 326.31 15.07 4.92 4.92 Total: -1.00 -28.74 326.31 -9.17 -37.91 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -6.20 Total: 2.62 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 0.06 Total: -16.55 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.44 Total: -44.77 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.49 Total: -0.63 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.74 -9.17 -37.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180505063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.053 kcal (2) G-P(sol) polarization free energy of solvation -28.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds