Wall clock time and date at job start Tue Mar 31 2020 06:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33635 * 126.03763 * 2 1 4 4 N 1.31788 * 114.49627 * 179.97438 * 3 2 1 5 5 C 1.29019 * 117.12556 * 359.97438 * 4 3 2 6 6 C 1.50703 * 124.91293 * 179.97438 * 5 4 3 7 7 N 1.46909 * 109.46875 * 90.00695 * 6 5 4 8 8 C 1.46906 * 110.99893 * 159.34683 * 7 6 5 9 9 C 1.50697 * 109.46830 * 190.98339 * 8 7 6 10 10 H 1.07996 * 120.00146 * 355.04555 * 9 8 7 11 11 C 1.37875 * 119.99830 * 175.04552 * 9 8 7 12 12 N 1.31513 * 120.00211 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99934 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46995 * 59.99860 * 13 11 9 15 15 H 1.48502 * 109.46771 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47224 * 299.99790 * 13 11 9 17 17 C 1.46902 * 110.99686 * 283.29737 * 7 6 5 18 18 C 1.52994 * 109.47302 * 314.14222 * 17 7 6 19 19 C 1.53002 * 109.47536 * 84.36731 * 18 17 7 20 20 C 1.53005 * 109.47327 * 204.37129 * 18 17 7 21 21 C 1.53008 * 109.47095 * 324.37049 * 18 17 7 22 22 S 1.70969 * 110.16969 * 0.02562 * 5 4 3 23 23 H 1.09003 * 109.46826 * 90.02463 * 1 2 3 24 24 H 1.08999 * 109.47910 * 210.02926 * 1 2 3 25 25 H 1.09000 * 109.47237 * 330.03356 * 1 2 3 26 26 H 1.07998 * 122.75450 * 359.72801 * 3 2 1 27 27 H 1.09001 * 109.47209 * 209.99906 * 6 5 4 28 28 H 1.08993 * 109.47988 * 330.00513 * 6 5 4 29 29 H 1.08999 * 109.46977 * 310.98285 * 8 7 6 30 30 H 1.09000 * 109.46871 * 70.98542 * 8 7 6 31 31 H 0.96996 * 120.00203 * 180.02562 * 12 11 9 32 32 H 1.09002 * 109.46890 * 74.13813 * 17 7 6 33 33 H 1.09000 * 109.46899 * 194.13592 * 17 7 6 34 34 H 1.09000 * 109.46656 * 60.48030 * 19 18 17 35 35 H 1.08994 * 109.47546 * 180.48341 * 19 18 17 36 36 H 1.08996 * 109.47352 * 300.48647 * 19 18 17 37 37 H 1.08996 * 109.47059 * 59.99630 * 20 18 17 38 38 H 1.08994 * 109.46970 * 180.02562 * 20 18 17 39 39 H 1.08998 * 109.46471 * 299.99740 * 20 18 17 40 40 H 1.08995 * 109.47304 * 52.65661 * 21 18 17 41 41 H 1.08999 * 109.46795 * 172.66063 * 21 18 17 42 42 H 1.08997 * 109.46834 * 292.65304 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0806 0.0000 4 7 3.5844 0.8169 0.0005 5 6 3.9310 -0.4258 0.0015 6 6 5.3531 -0.9246 0.0017 7 7 5.8153 -1.0857 1.3868 8 6 6.9625 -2.0007 1.4560 9 6 7.2379 -2.3531 2.8950 10 1 6.6751 -1.8777 3.6846 11 6 8.2085 -3.2824 3.2036 12 7 8.8937 -3.8617 2.2420 13 14 8.5504 -3.7188 4.9875 14 1 7.3179 -4.2678 5.6077 15 1 9.6308 -4.7357 5.0499 16 1 8.9740 -2.5001 5.7227 17 6 6.1421 0.2146 1.9873 18 6 6.9777 1.0353 1.0030 19 6 6.0494 1.7607 0.0268 20 6 7.8105 2.0620 1.7734 21 6 7.9091 0.1040 0.2244 22 16 2.5436 -1.4248 0.0011 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3635 -0.8897 0.5143 25 1 -0.3634 0.8903 0.5133 26 1 1.9025 2.0874 -0.0043 27 1 5.4013 -1.8851 -0.5114 28 1 5.9906 -0.2056 -0.5127 29 1 6.7375 -2.9085 0.8962 30 1 7.8396 -1.5168 1.0261 31 1 9.5762 -4.5158 2.4591 32 1 5.2210 0.7504 2.2169 33 1 6.7100 0.0587 2.9045 34 1 5.3916 2.4305 0.5807 35 1 6.6450 2.3386 -0.6797 36 1 5.4500 1.0298 -0.5158 37 1 8.4719 1.5452 2.4687 38 1 8.4054 2.6470 1.0721 39 1 7.1469 2.7254 2.3279 40 1 7.3275 -0.7045 -0.2183 41 1 8.4088 0.6663 -0.5643 42 1 8.6546 -0.3132 0.9013 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180505063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:25 Heat of formation + Delta-G solvation = 86.475294 kcal Electronic energy + Delta-G solvation = -21228.326063 eV Core-core repulsion = 18337.161575 eV Total energy + Delta-G solvation = -2891.164488 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.55463 -39.97439 -35.54658 -34.57099 -33.51402 -30.76930 -29.34198 -28.11907 -27.86640 -26.78402 -25.55682 -24.14335 -22.22284 -20.19907 -19.93940 -18.78437 -18.37188 -16.96758 -16.65800 -16.27541 -16.09121 -15.52008 -15.23996 -15.11819 -14.54512 -14.15821 -14.01396 -13.92738 -13.64583 -13.54365 -13.14138 -12.93456 -12.76501 -12.68837 -12.57512 -12.37540 -12.30467 -12.05521 -11.98874 -11.92305 -11.63217 -11.39257 -11.23383 -11.12177 -10.51716 -10.14065 -10.04964 -9.59358 -8.65272 -8.12127 -6.18360 -0.15457 0.52290 0.97284 1.41354 1.43036 1.50660 1.96281 2.43692 3.17647 3.23875 3.62104 3.96048 4.00807 4.10173 4.15200 4.16158 4.37622 4.46362 4.58913 4.64050 4.75225 4.77763 4.78062 4.93210 4.93871 4.97263 5.02397 5.12583 5.14173 5.18953 5.29807 5.33735 5.40543 5.45566 5.53885 5.56827 5.70262 5.81542 6.14446 6.43292 6.67605 6.90171 6.94897 7.47341 8.96670 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.017641 B = 0.005652 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.819143 B = 4952.398755 C = 5891.568926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.225 4.225 3 C 0.012 3.988 4 N -0.473 5.473 5 C 0.052 3.948 6 C 0.085 3.915 7 N -0.534 5.534 8 C 0.166 3.834 9 C -0.514 4.514 10 H 0.051 0.949 11 C 0.008 3.992 12 N -0.930 5.930 13 Si 0.955 3.045 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.271 1.271 17 C 0.082 3.918 18 C -0.096 4.096 19 C -0.142 4.142 20 C -0.129 4.129 21 C -0.156 4.156 22 S 0.116 5.884 23 H 0.089 0.911 24 H 0.072 0.928 25 H 0.095 0.905 26 H 0.194 0.806 27 H 0.074 0.926 28 H 0.115 0.885 29 H -0.002 1.002 30 H 0.041 0.959 31 H 0.262 0.738 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.045 0.955 36 H 0.090 0.910 37 H 0.040 0.960 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.999 10.523 -6.591 17.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.347 4.347 3 C -0.139 4.139 4 N -0.188 5.188 5 C -0.226 4.226 6 C -0.045 4.045 7 N -0.258 5.258 8 C 0.041 3.959 9 C -0.552 4.552 10 H 0.069 0.931 11 C -0.190 4.190 12 N -0.571 5.571 13 Si 0.781 3.219 14 H -0.200 1.200 15 H -0.209 1.209 16 H -0.196 1.196 17 C -0.046 4.046 18 C -0.098 4.098 19 C -0.198 4.198 20 C -0.187 4.187 21 C -0.212 4.212 22 S 0.370 5.630 23 H 0.108 0.892 24 H 0.091 0.909 25 H 0.113 0.887 26 H 0.211 0.789 27 H 0.093 0.907 28 H 0.132 0.868 29 H 0.016 0.984 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.108 0.892 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.970 9.483 -6.343 17.274 hybrid contribution 0.880 0.439 0.661 1.185 sum -12.090 9.922 -5.682 16.640 Atomic orbital electron populations 1.20329 0.84556 1.04236 1.03903 1.26397 1.02870 0.94288 1.11126 1.22143 0.86866 1.01125 1.03730 1.66556 1.18026 1.18102 1.16128 1.26872 1.00713 0.91557 1.03429 1.21612 0.88490 1.01515 0.92877 1.62107 1.37074 1.11496 1.15103 1.20457 0.88698 0.90273 0.96461 1.21385 1.17981 1.22609 0.93255 0.93124 1.25668 0.96050 0.96114 1.01124 1.70039 1.24573 1.28952 1.33510 0.85650 0.77658 0.78004 0.80567 1.20011 1.20862 1.19622 1.22029 0.97434 0.88224 0.96932 1.21139 0.95940 0.96017 0.96664 1.22542 0.98017 1.00833 0.98418 1.21752 0.99219 0.98049 0.99652 1.22636 0.99490 0.99296 0.99774 1.84073 0.98910 1.12482 1.67543 0.89246 0.90916 0.88658 0.78916 0.90733 0.86803 0.98428 0.94219 0.92921 0.92571 0.92655 0.92763 0.93560 0.89158 0.94117 0.91821 0.92214 0.91565 0.92148 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.02 10.42 71.24 0.74 -0.27 16 2 C -0.23 -5.13 6.60 24.64 0.16 -4.96 16 3 C 0.01 0.28 11.25 83.65 0.94 1.22 16 4 N -0.47 -14.27 7.23 -191.45 -1.38 -15.66 16 5 C 0.05 1.69 6.17 88.52 0.55 2.24 16 6 C 0.09 3.10 4.01 85.56 0.34 3.44 16 7 N -0.53 -23.01 4.61 -905.34 -4.17 -27.18 16 8 C 0.17 8.49 4.03 85.55 0.35 8.84 16 9 C -0.51 -28.90 8.37 25.60 0.21 -28.69 16 10 H 0.05 2.87 7.17 -2.91 -0.02 2.85 16 11 C 0.01 0.47 5.46 84.65 0.46 0.93 16 12 N -0.93 -55.00 13.29 21.45 0.28 -54.71 16 13 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 14 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 15 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 17 C 0.08 3.28 4.77 86.30 0.41 3.69 16 18 C -0.10 -3.25 0.77 -52.18 -0.04 -3.29 16 19 C -0.14 -4.24 6.59 71.98 0.47 -3.77 16 20 C -0.13 -3.93 8.35 71.98 0.60 -3.33 16 21 C -0.16 -5.67 6.21 71.98 0.45 -5.23 16 22 S 0.12 3.30 23.18 -56.49 -1.31 1.99 16 23 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.19 3.52 8.06 -2.91 -0.02 3.49 16 27 H 0.07 2.75 7.70 -2.39 -0.02 2.73 16 28 H 0.12 3.94 2.39 -2.39 -0.01 3.94 16 29 H 0.00 -0.13 7.80 -2.39 -0.02 -0.15 16 30 H 0.04 2.07 3.19 -2.48 -0.01 2.06 16 31 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 32 H 0.06 2.21 7.80 -2.39 -0.02 2.19 16 33 H 0.05 2.48 6.32 -2.39 -0.02 2.47 16 34 H 0.05 1.62 7.82 -2.39 -0.02 1.61 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 2.84 2.54 -2.39 -0.01 2.84 16 37 H 0.04 1.35 8.12 -2.39 -0.02 1.33 16 38 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 2.54 3.29 -2.39 -0.01 2.53 16 41 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.04 1.93 6.66 -2.39 -0.02 1.92 16 Total: -1.00 -62.67 326.31 2.11 -60.55 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 1.02 Total: 17.42 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: 5.65 Total: -29.17 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -5.27 Total: -97.55 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.31 Total: 1.99 kcal Total: -62.67 2.11 -60.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180505063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.028 kcal (2) G-P(sol) polarization free energy of solvation -62.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds