Wall clock time and date at job start Tue Mar 31 2020 06:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33645 * 126.03676 * 2 1 4 4 N 1.31785 * 114.49935 * 179.97438 * 3 2 1 5 5 C 1.29033 * 117.12320 * 0.02562 * 4 3 2 6 6 C 1.50703 * 124.91344 * 179.97438 * 5 4 3 7 7 N 1.46899 * 109.46963 * 89.99984 * 6 5 4 8 8 C 1.46901 * 110.99724 * 189.99857 * 7 6 5 9 9 C 1.50700 * 109.47027 * 169.18747 * 8 7 6 10 10 H 1.08006 * 120.00281 * 355.03256 * 9 8 7 11 11 C 1.37873 * 120.00108 * 175.03589 * 9 8 7 12 12 N 1.31514 * 120.00075 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00167 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46959 * 89.99927 * 13 11 9 15 15 H 1.48497 * 109.47218 * 210.00237 * 13 11 9 16 16 H 1.48506 * 109.47127 * 329.99936 * 13 11 9 17 17 C 1.46897 * 111.00251 * 66.04344 * 7 6 5 18 18 C 1.53003 * 109.46873 * 62.16100 * 17 7 6 19 19 C 1.53001 * 109.46932 * 180.77418 * 18 17 7 20 20 C 1.53001 * 109.46795 * 174.99774 * 19 18 17 21 21 C 1.52995 * 109.47035 * 294.99526 * 19 18 17 22 22 S 1.70968 * 110.16865 * 359.97438 * 5 4 3 23 23 H 1.09004 * 109.47042 * 90.02691 * 1 2 3 24 24 H 1.09002 * 109.47623 * 210.02172 * 1 2 3 25 25 H 1.09001 * 109.47335 * 330.02801 * 1 2 3 26 26 H 1.07994 * 122.75134 * 359.73322 * 3 2 1 27 27 H 1.08995 * 109.46863 * 209.99828 * 6 5 4 28 28 H 1.08998 * 109.47258 * 330.00054 * 6 5 4 29 29 H 1.08993 * 109.47364 * 289.18437 * 8 7 6 30 30 H 1.09001 * 109.47017 * 49.19039 * 8 7 6 31 31 H 0.96996 * 120.00225 * 179.97438 * 12 11 9 32 32 H 1.08995 * 109.47126 * 182.15844 * 17 7 6 33 33 H 1.08998 * 109.47361 * 302.16319 * 17 7 6 34 34 H 1.09002 * 109.46754 * 300.76936 * 18 17 7 35 35 H 1.08998 * 109.47368 * 60.77231 * 18 17 7 36 36 H 1.08996 * 109.47542 * 55.00115 * 19 18 17 37 37 H 1.08995 * 109.47218 * 60.00216 * 20 19 18 38 38 H 1.08999 * 109.47080 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.47391 * 299.99753 * 20 19 18 40 40 H 1.08996 * 109.47127 * 60.00250 * 21 19 18 41 41 H 1.09003 * 109.47329 * 180.02562 * 21 19 18 42 42 H 1.08995 * 109.47497 * 300.00101 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8171 0.0005 5 6 3.9311 -0.4258 0.0005 6 6 5.3532 -0.9245 0.0005 7 7 5.8152 -1.0867 1.3855 8 6 7.2612 -1.3415 1.4316 9 6 7.7442 -1.2386 2.8554 10 1 7.0643 -0.9287 3.6353 11 6 9.0541 -1.5399 3.1624 12 7 9.8820 -1.9176 2.2129 13 14 9.6527 -1.4130 4.9274 14 1 9.4530 -2.7152 5.6126 15 1 11.0963 -1.0649 4.9367 16 1 8.8846 -0.3578 5.6360 17 6 5.0706 -2.1536 2.0674 18 6 5.3197 -3.4847 1.3553 19 6 4.5289 -4.5927 2.0539 20 6 4.6782 -5.8979 1.2696 21 6 5.0668 -4.7860 3.4730 22 16 2.5436 -1.4248 0.0004 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3634 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5134 26 1 1.9024 2.0875 -0.0042 27 1 5.4014 -1.8846 -0.5134 28 1 5.9906 -0.2050 -0.5133 29 1 7.4663 -2.3416 1.0498 30 1 7.7797 -0.6049 0.8179 31 1 10.8036 -2.1292 2.4289 32 1 5.4059 -2.2267 3.1019 33 1 4.0052 -1.9241 2.0461 34 1 4.9970 -3.4073 0.3170 35 1 6.3832 -3.7211 1.3885 36 1 3.4760 -4.3144 2.0991 37 1 5.7310 -6.1762 1.2243 38 1 4.1152 -6.6873 1.7675 39 1 4.2950 -5.7602 0.2585 40 1 4.9605 -3.8562 4.0317 41 1 4.5038 -5.5757 3.9706 42 1 6.1197 -5.0643 3.4277 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180529059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:20 Heat of formation + Delta-G solvation = 28.846594 kcal Electronic energy + Delta-G solvation = -20548.740999 eV Core-core repulsion = 17655.077542 eV Total energy + Delta-G solvation = -2893.663456 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.52288 -37.86316 -35.15718 -32.95494 -32.27176 -29.24352 -28.39229 -26.84776 -26.22668 -24.78252 -23.63405 -22.76102 -20.36616 -19.54012 -18.67516 -17.74945 -16.24777 -15.37525 -15.11825 -15.06076 -14.67790 -14.34142 -13.89611 -13.65825 -13.34407 -13.29836 -12.84987 -12.79474 -12.68382 -12.28616 -12.02427 -11.87585 -11.59524 -11.20967 -11.14648 -11.05917 -10.83271 -10.70066 -10.52530 -10.44747 -10.26437 -9.94338 -9.82823 -9.33480 -9.19337 -8.92842 -8.57920 -8.41438 -7.22620 -6.02031 -4.02533 0.89129 1.51846 1.95185 3.06424 3.32234 3.39011 3.43818 4.39408 4.47403 4.94792 4.98855 5.10381 5.20917 5.24232 5.31939 5.34493 5.36028 5.40284 5.65693 5.68772 5.80363 5.88958 5.90419 6.00734 6.01164 6.11029 6.14007 6.19037 6.28604 6.36630 6.47173 6.55117 6.57601 6.81233 6.92439 7.26950 7.38145 7.79239 8.01993 8.07010 8.14537 8.51023 9.04606 9.61316 11.08587 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.016039 B = 0.005419 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.319921 B = 5165.888266 C = 6230.395721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.244 4.244 3 C 0.036 3.964 4 N -0.464 5.464 5 C 0.084 3.916 6 C 0.120 3.880 7 N -0.524 5.524 8 C 0.191 3.809 9 C -0.501 4.501 10 H 0.062 0.938 11 C 0.058 3.942 12 N -0.898 5.898 13 Si 0.894 3.106 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.273 1.273 17 C 0.058 3.942 18 C -0.153 4.153 19 C -0.089 4.089 20 C -0.145 4.145 21 C -0.147 4.147 22 S 0.106 5.894 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.169 0.831 27 H 0.052 0.948 28 H 0.098 0.902 29 H 0.007 0.993 30 H 0.027 0.973 31 H 0.261 0.739 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.653 -2.947 -4.699 17.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.365 4.365 3 C -0.115 4.115 4 N -0.178 5.178 5 C -0.195 4.195 6 C -0.012 4.012 7 N -0.248 5.248 8 C 0.067 3.933 9 C -0.540 4.540 10 H 0.080 0.920 11 C -0.144 4.144 12 N -0.538 5.538 13 Si 0.722 3.278 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.198 1.198 17 C -0.071 4.071 18 C -0.192 4.192 19 C -0.108 4.108 20 C -0.203 4.203 21 C -0.204 4.204 22 S 0.360 5.640 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.186 0.814 27 H 0.069 0.931 28 H 0.116 0.884 29 H 0.024 0.976 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.256 -3.204 -4.485 17.165 hybrid contribution 0.299 0.220 0.508 0.629 sum -15.957 -2.984 -3.977 16.714 Atomic orbital electron populations 1.20150 0.87241 1.03065 1.02444 1.25928 1.01298 0.95572 1.13696 1.21700 0.87247 0.99777 1.02790 1.66264 1.17066 1.18883 1.15562 1.27176 1.00610 0.90695 1.00982 1.20726 0.87010 0.99549 0.93908 1.62350 1.08169 1.43829 1.10482 1.19822 0.79630 0.95728 0.98141 1.21082 0.95195 1.44540 0.93205 0.91958 1.24933 0.96737 0.95428 0.97255 1.69947 1.05270 1.46483 1.32113 0.86554 0.77912 0.78354 0.84974 1.20750 1.21307 1.19794 1.22248 0.96805 0.87870 1.00171 1.22298 1.01979 0.96296 0.98606 1.20997 0.99321 0.94943 0.95532 1.21838 1.01714 0.97155 0.99550 1.21858 1.01242 1.01346 0.95951 1.83957 0.99402 1.11862 1.68745 0.91005 0.91390 0.90575 0.81375 0.93069 0.88412 0.97576 0.95450 0.92969 0.89347 0.93079 0.93298 0.90153 0.91957 0.92679 0.93294 0.93226 0.92124 0.93709 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.42 36.00 0.38 -0.23 16 2 C -0.24 -3.08 6.60 -35.92 -0.24 -3.32 16 3 C 0.04 0.52 11.25 -19.18 -0.22 0.30 16 4 N -0.46 -8.22 10.54 -11.86 -0.13 -8.35 16 5 C 0.08 1.44 6.18 -13.45 -0.08 1.36 16 6 C 0.12 2.21 5.34 -4.97 -0.03 2.18 16 7 N -0.52 -11.20 4.69 -237.52 -1.11 -12.32 16 8 C 0.19 4.81 4.52 -4.98 -0.02 4.78 16 9 C -0.50 -13.75 8.40 -34.44 -0.29 -14.04 16 10 H 0.06 1.73 7.36 -52.48 -0.39 1.34 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -26.11 13.29 55.43 0.74 -25.38 16 13 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 17 C 0.06 1.09 4.65 -3.82 -0.02 1.07 16 18 C -0.15 -2.60 4.03 -26.73 -0.11 -2.71 16 19 C -0.09 -1.28 2.92 -90.62 -0.26 -1.54 16 20 C -0.15 -1.85 9.19 37.16 0.34 -1.51 16 21 C -0.15 -2.18 8.95 37.15 0.33 -1.85 16 22 S 0.11 1.47 21.60 -107.50 -2.32 -0.86 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.17 1.94 8.06 -52.49 -0.42 1.52 16 27 H 0.05 0.88 6.05 -51.93 -0.31 0.56 16 28 H 0.10 1.85 7.92 -51.93 -0.41 1.44 16 29 H 0.01 0.17 6.04 -51.93 -0.31 -0.14 16 30 H 0.03 0.74 7.91 -51.93 -0.41 0.33 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.09 1.84 5.43 -51.93 -0.28 1.56 16 33 H 0.05 0.90 5.91 -51.93 -0.31 0.60 16 34 H 0.05 0.79 6.29 -51.93 -0.33 0.46 16 35 H 0.08 1.61 6.34 -51.93 -0.33 1.28 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.95 6.58 -51.93 -0.34 0.60 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 344.34 15.07 5.19 5.19 Total: -1.00 -29.84 344.34 -9.75 -39.59 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.78 Total: -0.38 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -0.31 Total: -13.99 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.50 Total: -46.04 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.32 Total: -0.86 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.84 -9.75 -39.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180529059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.435 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds