Wall clock time and date at job start Tue Mar 31 2020 06:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33645 * 126.03676 * 2 1 4 4 N 1.31785 * 114.49935 * 179.97438 * 3 2 1 5 5 C 1.29033 * 117.12320 * 0.02562 * 4 3 2 6 6 C 1.50703 * 124.91344 * 179.97438 * 5 4 3 7 7 N 1.46899 * 109.46963 * 89.99984 * 6 5 4 8 8 C 1.46901 * 110.99724 * 189.99857 * 7 6 5 9 9 C 1.50700 * 109.47027 * 169.18747 * 8 7 6 10 10 H 1.08006 * 120.00281 * 355.03256 * 9 8 7 11 11 C 1.37873 * 120.00108 * 175.03589 * 9 8 7 12 12 N 1.31514 * 120.00075 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00167 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.46959 * 89.99927 * 13 11 9 15 15 H 1.48497 * 109.47218 * 210.00237 * 13 11 9 16 16 H 1.48506 * 109.47127 * 329.99936 * 13 11 9 17 17 C 1.46897 * 111.00251 * 66.04344 * 7 6 5 18 18 C 1.53003 * 109.46873 * 62.16100 * 17 7 6 19 19 C 1.53001 * 109.46932 * 180.77418 * 18 17 7 20 20 C 1.53001 * 109.46795 * 174.99774 * 19 18 17 21 21 C 1.52995 * 109.47035 * 294.99526 * 19 18 17 22 22 S 1.70968 * 110.16865 * 359.97438 * 5 4 3 23 23 H 1.09004 * 109.47042 * 90.02691 * 1 2 3 24 24 H 1.09002 * 109.47623 * 210.02172 * 1 2 3 25 25 H 1.09001 * 109.47335 * 330.02801 * 1 2 3 26 26 H 1.07994 * 122.75134 * 359.73322 * 3 2 1 27 27 H 1.08995 * 109.46863 * 209.99828 * 6 5 4 28 28 H 1.08998 * 109.47258 * 330.00054 * 6 5 4 29 29 H 1.08993 * 109.47364 * 289.18437 * 8 7 6 30 30 H 1.09001 * 109.47017 * 49.19039 * 8 7 6 31 31 H 0.96996 * 120.00225 * 179.97438 * 12 11 9 32 32 H 1.08995 * 109.47126 * 182.15844 * 17 7 6 33 33 H 1.08998 * 109.47361 * 302.16319 * 17 7 6 34 34 H 1.09002 * 109.46754 * 300.76936 * 18 17 7 35 35 H 1.08998 * 109.47368 * 60.77231 * 18 17 7 36 36 H 1.08996 * 109.47542 * 55.00115 * 19 18 17 37 37 H 1.08995 * 109.47218 * 60.00216 * 20 19 18 38 38 H 1.08999 * 109.47080 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.47391 * 299.99753 * 20 19 18 40 40 H 1.08996 * 109.47127 * 60.00250 * 21 19 18 41 41 H 1.09003 * 109.47329 * 180.02562 * 21 19 18 42 42 H 1.08995 * 109.47497 * 300.00101 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2932 1.0807 0.0000 4 7 3.5844 0.8171 0.0005 5 6 3.9311 -0.4258 0.0005 6 6 5.3532 -0.9245 0.0005 7 7 5.8152 -1.0867 1.3855 8 6 7.2612 -1.3415 1.4316 9 6 7.7442 -1.2386 2.8554 10 1 7.0643 -0.9287 3.6353 11 6 9.0541 -1.5399 3.1624 12 7 9.8820 -1.9176 2.2129 13 14 9.6527 -1.4130 4.9274 14 1 9.4530 -2.7152 5.6126 15 1 11.0963 -1.0649 4.9367 16 1 8.8846 -0.3578 5.6360 17 6 5.0706 -2.1536 2.0674 18 6 5.3197 -3.4847 1.3553 19 6 4.5289 -4.5927 2.0539 20 6 4.6782 -5.8979 1.2696 21 6 5.0668 -4.7860 3.4730 22 16 2.5436 -1.4248 0.0004 23 1 -0.3633 -0.0005 -1.0277 24 1 -0.3634 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5134 26 1 1.9024 2.0875 -0.0042 27 1 5.4014 -1.8846 -0.5134 28 1 5.9906 -0.2050 -0.5133 29 1 7.4663 -2.3416 1.0498 30 1 7.7797 -0.6049 0.8179 31 1 10.8036 -2.1292 2.4289 32 1 5.4059 -2.2267 3.1019 33 1 4.0052 -1.9241 2.0461 34 1 4.9970 -3.4073 0.3170 35 1 6.3832 -3.7211 1.3885 36 1 3.4760 -4.3144 2.0991 37 1 5.7310 -6.1762 1.2243 38 1 4.1152 -6.6873 1.7675 39 1 4.2950 -5.7602 0.2585 40 1 4.9605 -3.8562 4.0317 41 1 4.5038 -5.5757 3.9706 42 1 6.1197 -5.0643 3.4277 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180529059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:19 Heat of formation + Delta-G solvation = 10.716705 kcal Electronic energy + Delta-G solvation = -20549.527170 eV Core-core repulsion = 17655.077542 eV Total energy + Delta-G solvation = -2894.449627 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.73817 -39.36907 -36.50980 -34.79726 -33.55418 -30.59046 -30.07676 -28.00316 -27.75175 -26.07963 -25.15520 -24.27180 -21.86252 -20.85181 -19.93913 -18.94043 -18.33491 -17.00408 -16.61861 -16.40469 -16.09505 -15.74118 -15.19221 -15.01348 -14.61186 -14.43984 -14.20963 -14.08645 -13.70739 -13.58519 -13.39381 -13.18541 -13.06372 -12.80768 -12.72971 -12.61110 -12.47058 -12.12543 -12.04366 -11.88331 -11.67988 -11.49783 -11.29602 -11.27092 -10.58218 -10.49336 -10.07188 -9.68526 -8.93576 -8.17687 -6.26097 -0.25463 0.40843 0.81105 1.39925 1.41217 1.52339 1.89585 2.41206 3.15042 3.19171 3.42200 3.94077 3.97443 4.07850 4.10149 4.17099 4.30627 4.35866 4.40219 4.55145 4.64719 4.77056 4.79362 4.82614 4.84982 4.93507 4.95042 5.05184 5.07717 5.13139 5.21515 5.24430 5.31062 5.33855 5.42683 5.52674 5.59244 5.68936 6.06563 6.31174 6.57290 6.87990 6.89065 7.42397 8.92719 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.016039 B = 0.005419 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.319921 B = 5165.888266 C = 6230.395721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.221 4.221 3 C 0.009 3.991 4 N -0.494 5.494 5 C 0.043 3.957 6 C 0.125 3.875 7 N -0.539 5.539 8 C 0.209 3.791 9 C -0.514 4.514 10 H 0.055 0.945 11 C 0.009 3.991 12 N -0.931 5.931 13 Si 0.959 3.041 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.270 1.270 17 C 0.065 3.935 18 C -0.141 4.141 19 C -0.085 4.085 20 C -0.142 4.142 21 C -0.146 4.146 22 S 0.145 5.855 23 H 0.091 0.909 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.192 0.808 27 H 0.062 0.938 28 H 0.079 0.921 29 H -0.010 1.010 30 H -0.003 1.003 31 H 0.263 0.737 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.762 -3.690 -4.165 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.342 4.342 3 C -0.141 4.141 4 N -0.209 5.209 5 C -0.235 4.235 6 C -0.006 4.006 7 N -0.263 5.263 8 C 0.084 3.916 9 C -0.553 4.553 10 H 0.073 0.927 11 C -0.189 4.189 12 N -0.572 5.572 13 Si 0.785 3.215 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.194 1.194 17 C -0.063 4.063 18 C -0.180 4.180 19 C -0.104 4.104 20 C -0.199 4.199 21 C -0.203 4.203 22 S 0.399 5.601 23 H 0.110 0.890 24 H 0.099 0.901 25 H 0.113 0.887 26 H 0.209 0.791 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.008 0.992 30 H 0.015 0.985 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -19.378 -3.949 -3.955 20.168 hybrid contribution 1.118 0.489 0.285 1.253 sum -18.260 -3.460 -3.670 18.944 Atomic orbital electron populations 1.20380 0.83935 1.04623 1.04170 1.26532 1.03210 0.94325 1.10130 1.22074 0.86303 1.01513 1.04253 1.66211 1.19364 1.19743 1.15613 1.26706 1.00812 0.91690 1.04246 1.20554 0.88392 0.99651 0.91986 1.62182 1.06146 1.45107 1.12859 1.19412 0.82130 0.93655 0.96451 1.21318 0.95487 1.44434 0.94014 0.92655 1.25746 0.96836 0.94939 1.01404 1.70064 1.05610 1.47283 1.34197 0.85530 0.77348 0.78697 0.79969 1.19650 1.20801 1.19412 1.22170 0.97104 0.88248 0.98773 1.22149 1.00145 0.96344 0.99377 1.21006 0.99641 0.94781 0.95006 1.21806 1.01310 0.96635 1.00158 1.21848 1.00338 1.01577 0.96550 1.83669 0.97468 1.11303 1.67642 0.89007 0.90142 0.88677 0.79096 0.92037 0.90264 0.99249 0.98536 0.92782 0.91658 0.91286 0.92268 0.93911 0.89963 0.94084 0.91096 0.92140 0.93406 0.91012 0.94587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.42 71.23 0.74 -0.18 16 2 C -0.22 -4.91 6.60 24.64 0.16 -4.75 16 3 C 0.01 0.23 11.25 83.66 0.94 1.17 16 4 N -0.49 -17.45 10.54 -191.44 -2.02 -19.47 16 5 C 0.04 1.47 6.18 88.52 0.55 2.02 16 6 C 0.13 4.83 5.34 85.56 0.46 5.28 16 7 N -0.54 -24.08 4.69 -905.39 -4.24 -28.32 16 8 C 0.21 11.17 4.52 85.56 0.39 11.55 16 9 C -0.51 -29.36 8.40 25.60 0.21 -29.14 16 10 H 0.06 3.17 7.36 -2.91 -0.02 3.15 16 11 C 0.01 0.51 5.46 84.65 0.46 0.97 16 12 N -0.93 -55.88 13.29 21.45 0.28 -55.59 16 13 Si 0.96 44.88 29.54 68.60 2.03 46.90 16 14 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 15 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 16 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 17 C 0.07 2.52 4.65 86.30 0.40 2.92 16 18 C -0.14 -4.87 4.03 30.60 0.12 -4.74 16 19 C -0.09 -2.33 2.92 -10.79 -0.03 -2.37 16 20 C -0.14 -3.33 9.19 71.98 0.66 -2.67 16 21 C -0.15 -4.24 8.95 71.98 0.64 -3.59 16 22 S 0.15 3.70 21.60 -56.49 -1.22 2.48 16 23 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 24 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.19 4.00 8.06 -2.91 -0.02 3.97 16 27 H 0.06 2.18 6.05 -2.39 -0.01 2.16 16 28 H 0.08 3.24 7.92 -2.39 -0.02 3.23 16 29 H -0.01 -0.57 6.04 -2.39 -0.01 -0.58 16 30 H 0.00 -0.20 7.91 -2.39 -0.02 -0.22 16 31 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 32 H 0.07 2.81 5.43 -2.39 -0.01 2.80 16 33 H 0.07 2.40 5.91 -2.39 -0.01 2.38 16 34 H 0.06 1.89 6.29 -2.39 -0.01 1.88 16 35 H 0.04 1.80 6.34 -2.39 -0.02 1.79 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.05 1.49 6.58 -2.39 -0.02 1.47 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -67.09 344.34 1.53 -65.56 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.99 Total: 11.96 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 5.71 Total: -23.53 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -5.98 Total: -103.38 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 3.70 SS G_CDS: -1.22 Total: 2.48 kcal Total: -67.09 1.53 -65.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180529059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.280 kcal (2) G-P(sol) polarization free energy of solvation -67.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds