Wall clock time and date at job start Tue Mar 31 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47040 * 2 1 4 4 N 1.40065 * 126.04768 * 275.09554 * 3 2 1 5 5 C 1.30831 * 108.39317 * 179.97438 * 4 3 2 6 6 C 1.50698 * 125.83925 * 180.02562 * 5 4 3 7 7 C 1.39774 * 108.32762 * 359.97438 * 5 4 3 8 8 N 1.48035 * 126.09907 * 180.26184 * 7 5 4 9 9 O 1.21795 * 119.99798 * 269.69650 * 8 7 5 10 10 O 1.21798 * 119.99845 * 89.68927 * 8 7 5 11 11 C 1.35254 * 126.04363 * 95.09127 * 3 2 1 12 12 N 1.39213 * 126.21962 * 359.97438 * 11 3 2 13 13 C 1.46896 * 110.99887 * 205.83506 * 12 11 3 14 14 C 1.53003 * 109.46923 * 173.17434 * 13 12 11 15 15 C 1.53000 * 109.46915 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47222 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99821 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00315 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99504 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00070 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47481 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47195 * 119.99494 * 20 18 16 23 23 H 1.48500 * 109.47271 * 239.99719 * 20 18 16 24 24 H 1.09000 * 109.47374 * 295.03345 * 1 2 3 25 25 H 1.08993 * 109.47277 * 55.04004 * 1 2 3 26 26 H 1.09010 * 109.46831 * 175.03664 * 1 2 3 27 27 H 1.09001 * 109.47594 * 239.99749 * 2 1 3 28 28 H 1.09004 * 109.46914 * 119.99874 * 2 1 3 29 29 H 1.09003 * 109.47580 * 269.97459 * 6 5 4 30 30 H 1.09000 * 109.47213 * 29.97774 * 6 5 4 31 31 H 1.09002 * 109.47149 * 149.97240 * 6 5 4 32 32 H 1.00902 * 110.99769 * 329.78607 * 12 11 3 33 33 H 1.09005 * 109.46851 * 293.16808 * 13 12 11 34 34 H 1.08997 * 109.47315 * 53.16659 * 13 12 11 35 35 H 1.09000 * 109.46495 * 299.99106 * 14 13 12 36 36 H 1.08991 * 109.47400 * 59.99780 * 14 13 12 37 37 H 1.08997 * 109.47156 * 299.99794 * 15 14 13 38 38 H 1.09008 * 109.47403 * 59.99761 * 15 14 13 39 39 H 0.97000 * 119.99540 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1982 2.1918 -1.1280 5 6 2.6464 3.3556 -0.7327 6 6 2.9744 4.5245 -1.6256 7 6 2.7680 3.3301 0.6595 8 7 3.2360 4.4440 1.5147 9 8 4.4201 4.5537 1.7781 10 8 2.4369 5.2510 1.9549 11 6 2.3750 2.0992 1.0893 12 7 2.3441 1.6602 2.4101 13 6 2.1949 2.7901 3.3369 14 6 1.9944 2.2607 4.7583 15 6 1.8396 3.4375 5.7237 16 6 1.6415 2.9161 7.1237 17 1 1.6269 1.8518 7.3065 18 6 1.4777 3.7977 8.1711 19 7 1.4949 5.0938 7.9483 20 14 1.2313 3.1513 9.9062 21 1 1.2509 1.6666 9.8888 22 1 2.3231 3.6509 10.7802 23 1 -0.0763 3.6226 10.4290 24 1 -0.3634 0.4348 0.9311 25 1 -0.3633 0.5888 -0.8422 26 1 -0.3633 -1.0239 -0.0889 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.0188 4.4659 -1.9320 30 1 2.3349 4.4983 -2.5079 31 1 2.8066 5.4547 -1.0828 32 1 1.6116 0.9802 2.5481 33 1 3.0917 3.4088 3.3028 34 1 1.3305 3.3869 3.0460 35 1 1.0976 1.6420 4.7923 36 1 2.8588 1.6639 5.0491 37 1 2.7365 4.0559 5.6896 38 1 0.9753 4.0347 5.4331 39 1 1.3800 5.7140 8.6852 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192565791.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:11 Heat of formation + Delta-G solvation = 66.837812 kcal Electronic energy + Delta-G solvation = -22514.223986 eV Core-core repulsion = 19075.914737 eV Total energy + Delta-G solvation = -3438.309248 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.52815 -41.22737 -37.20774 -36.13655 -35.37697 -33.72824 -31.89942 -31.33435 -29.84957 -28.26494 -26.65921 -25.49919 -23.38335 -23.08897 -21.34026 -20.91949 -19.95450 -18.69521 -18.43692 -17.33385 -16.85858 -16.34595 -16.26505 -15.40154 -15.04656 -14.79170 -14.43350 -14.18755 -13.81077 -13.47048 -12.96743 -12.93515 -12.60988 -12.34329 -12.14020 -11.91558 -11.81971 -11.44792 -11.32336 -11.03074 -10.87327 -10.84150 -10.77592 -10.59108 -10.51694 -9.87252 -9.53385 -9.49240 -9.13434 -8.63404 -8.36658 -6.00246 -4.04239 0.80969 1.18281 1.33033 1.88692 2.11776 3.30832 3.33895 3.38505 3.41789 3.90294 4.18331 4.43612 4.44754 4.50959 4.67285 4.70323 5.04323 5.12915 5.17159 5.21803 5.22364 5.31206 5.35661 5.45112 5.58985 5.74402 5.83162 5.93210 6.17528 6.37119 6.56170 6.64069 6.72815 6.93239 7.09718 7.63509 7.74070 7.90974 7.97282 8.36726 9.02085 9.59933 11.10857 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.020853 B = 0.004167 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.421186 B = 6718.467092 C = 7747.981640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.127 3.873 3 N -0.376 5.376 4 N -0.277 5.277 5 C 0.146 3.854 6 C -0.085 4.085 7 C -0.234 4.234 8 N 0.060 4.940 9 O -0.144 6.144 10 O -0.136 6.136 11 C 0.363 3.637 12 N -0.599 5.599 13 C 0.042 3.958 14 C -0.106 4.106 15 C 0.024 3.976 16 C -0.524 4.524 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.889 5.889 20 Si 0.892 3.108 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.284 1.284 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.370 0.630 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.022 0.978 38 H 0.020 0.980 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.733 -8.630 -19.856 21.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.007 3.993 3 N -0.162 5.162 4 N -0.098 5.098 5 C -0.023 4.023 6 C -0.143 4.143 7 C -0.332 4.332 8 N 0.589 4.411 9 O -0.365 6.365 10 O -0.359 6.359 11 C 0.132 3.868 12 N -0.228 5.228 13 C -0.084 4.084 14 C -0.144 4.144 15 C -0.013 4.013 16 C -0.563 4.563 17 H 0.074 0.926 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.210 1.210 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.197 0.803 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.038 0.962 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.740 -10.000 -21.054 23.320 hybrid contribution -0.503 0.403 1.860 1.968 sum -1.243 -9.597 -19.194 21.496 Atomic orbital electron populations 1.22235 0.93539 1.03830 1.03611 1.21894 0.95716 0.76199 1.05500 1.48472 1.52666 1.12805 1.02253 1.77515 1.25106 1.01096 1.06099 1.21869 0.95553 0.95291 0.89626 1.20397 1.03419 0.92172 0.98319 1.19917 1.31487 0.90089 0.91665 1.42467 1.00294 1.00136 0.98156 1.94553 1.00647 1.79848 1.61476 1.94600 1.51784 1.36763 1.52750 1.18883 0.92595 0.88224 0.87079 1.57390 1.49425 1.17782 0.98187 1.22974 1.02395 0.89823 0.93199 1.21737 1.00974 1.01359 0.90325 1.19052 0.97854 0.91852 0.92582 1.21178 1.50050 0.92872 0.92167 0.92638 1.25022 0.95298 0.94855 0.99157 1.69986 1.49741 1.01254 1.31816 0.86534 0.77765 0.78973 0.84696 1.19818 1.20905 1.21001 0.91891 0.91087 0.89688 0.87675 0.88067 0.89144 0.89270 0.90080 0.80309 0.89983 0.91817 0.92882 0.91856 0.95926 0.96190 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.24 37.16 0.38 -0.72 16 2 C 0.13 0.93 6.85 -4.05 -0.03 0.90 16 3 N -0.38 -4.41 3.62 -60.45 -0.22 -4.63 16 4 N -0.28 -3.56 12.56 33.65 0.42 -3.14 16 5 C 0.15 1.96 7.21 -82.45 -0.59 1.36 16 6 C -0.08 -0.83 10.44 36.00 0.38 -0.46 16 7 C -0.23 -3.68 6.32 -80.11 -0.51 -4.19 16 8 N 0.06 1.08 2.40 33.88 0.08 1.16 16 9 O -0.14 -2.73 18.60 -29.46 -0.55 -3.28 16 10 O -0.14 -2.61 17.55 -29.46 -0.52 -3.13 16 11 C 0.36 5.17 7.24 -153.40 -1.11 4.06 16 12 N -0.60 -8.47 6.55 -60.17 -0.39 -8.86 16 13 C 0.04 0.74 4.10 -3.82 -0.02 0.73 16 14 C -0.11 -2.11 5.34 -26.73 -0.14 -2.25 16 15 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 16 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 20 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 27 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.10 0.60 7.63 -51.93 -0.40 0.20 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.37 4.13 7.90 -39.29 -0.31 3.82 16 33 H 0.08 1.65 5.45 -51.93 -0.28 1.37 16 34 H 0.06 1.17 7.35 -51.93 -0.38 0.79 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.02 0.54 8.14 -51.92 -0.42 0.12 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 336.65 15.07 5.07 5.07 Total: -1.00 -33.30 336.65 -8.14 -41.44 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.56 Total: -1.45 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -2.19 Total: -13.56 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.63 Total: -41.65 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -1.06 Total: -6.41 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.30 -8.14 -41.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192565791.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.281 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds