Wall clock time and date at job start Tue Mar 31 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47040 * 2 1 4 4 N 1.40065 * 126.04768 * 275.09554 * 3 2 1 5 5 C 1.30831 * 108.39317 * 179.97438 * 4 3 2 6 6 C 1.50698 * 125.83925 * 180.02562 * 5 4 3 7 7 C 1.39774 * 108.32762 * 359.97438 * 5 4 3 8 8 N 1.48035 * 126.09907 * 180.26184 * 7 5 4 9 9 O 1.21795 * 119.99798 * 269.69650 * 8 7 5 10 10 O 1.21798 * 119.99845 * 89.68927 * 8 7 5 11 11 C 1.35254 * 126.04363 * 95.09127 * 3 2 1 12 12 N 1.39213 * 126.21962 * 359.97438 * 11 3 2 13 13 C 1.46896 * 110.99887 * 205.83506 * 12 11 3 14 14 C 1.53003 * 109.46923 * 173.17434 * 13 12 11 15 15 C 1.53000 * 109.46915 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47222 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99821 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00315 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99504 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00070 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47481 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47195 * 119.99494 * 20 18 16 23 23 H 1.48500 * 109.47271 * 239.99719 * 20 18 16 24 24 H 1.09000 * 109.47374 * 295.03345 * 1 2 3 25 25 H 1.08993 * 109.47277 * 55.04004 * 1 2 3 26 26 H 1.09010 * 109.46831 * 175.03664 * 1 2 3 27 27 H 1.09001 * 109.47594 * 239.99749 * 2 1 3 28 28 H 1.09004 * 109.46914 * 119.99874 * 2 1 3 29 29 H 1.09003 * 109.47580 * 269.97459 * 6 5 4 30 30 H 1.09000 * 109.47213 * 29.97774 * 6 5 4 31 31 H 1.09002 * 109.47149 * 149.97240 * 6 5 4 32 32 H 1.00902 * 110.99769 * 329.78607 * 12 11 3 33 33 H 1.09005 * 109.46851 * 293.16808 * 13 12 11 34 34 H 1.08997 * 109.47315 * 53.16659 * 13 12 11 35 35 H 1.09000 * 109.46495 * 299.99106 * 14 13 12 36 36 H 1.08991 * 109.47400 * 59.99780 * 14 13 12 37 37 H 1.08997 * 109.47156 * 299.99794 * 15 14 13 38 38 H 1.09008 * 109.47403 * 59.99761 * 15 14 13 39 39 H 0.97000 * 119.99540 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1982 2.1918 -1.1280 5 6 2.6464 3.3556 -0.7327 6 6 2.9744 4.5245 -1.6256 7 6 2.7680 3.3301 0.6595 8 7 3.2360 4.4440 1.5147 9 8 4.4201 4.5537 1.7781 10 8 2.4369 5.2510 1.9549 11 6 2.3750 2.0992 1.0893 12 7 2.3441 1.6602 2.4101 13 6 2.1949 2.7901 3.3369 14 6 1.9944 2.2607 4.7583 15 6 1.8396 3.4375 5.7237 16 6 1.6415 2.9161 7.1237 17 1 1.6269 1.8518 7.3065 18 6 1.4777 3.7977 8.1711 19 7 1.4949 5.0938 7.9483 20 14 1.2313 3.1513 9.9062 21 1 1.2509 1.6666 9.8888 22 1 2.3231 3.6509 10.7802 23 1 -0.0763 3.6226 10.4290 24 1 -0.3634 0.4348 0.9311 25 1 -0.3633 0.5888 -0.8422 26 1 -0.3633 -1.0239 -0.0889 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.0188 4.4659 -1.9320 30 1 2.3349 4.4983 -2.5079 31 1 2.8066 5.4547 -1.0828 32 1 1.6116 0.9802 2.5481 33 1 3.0917 3.4088 3.3028 34 1 1.3305 3.3869 3.0460 35 1 1.0976 1.6420 4.7923 36 1 2.8588 1.6639 5.0491 37 1 2.7365 4.0559 5.6896 38 1 0.9753 4.0347 5.4331 39 1 1.3800 5.7140 8.6852 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192565791.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:11 Heat of formation + Delta-G solvation = 46.298502 kcal Electronic energy + Delta-G solvation = -22515.114637 eV Core-core repulsion = 19075.914737 eV Total energy + Delta-G solvation = -3439.199899 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.72076 -42.46729 -38.52325 -37.57701 -36.26263 -35.58424 -33.51963 -32.32052 -31.16932 -29.31431 -28.20881 -26.85969 -24.90595 -24.13164 -22.81580 -22.11537 -21.36035 -19.88510 -19.81658 -18.56941 -18.33995 -18.09812 -17.34598 -16.77894 -16.38653 -16.21650 -15.63930 -15.26185 -14.56401 -14.48539 -14.42025 -14.09554 -13.82991 -13.60894 -13.37559 -13.08013 -12.84658 -12.80515 -12.79431 -12.64367 -12.41181 -12.34734 -12.27164 -12.09288 -11.98096 -11.58013 -11.54330 -11.22168 -10.57396 -10.47668 -9.79216 -8.19366 -6.32231 -0.67143 0.08747 0.19940 0.81306 1.02446 1.41599 1.42509 1.55372 2.24605 2.42506 2.98116 3.14030 3.14737 3.57394 3.70967 3.78224 3.84914 3.90219 4.20635 4.25913 4.28217 4.43767 4.49719 4.51852 4.66619 4.70489 4.78836 4.91930 4.98323 5.07195 5.10959 5.24616 5.26829 5.47071 5.62423 5.70830 5.81248 6.06147 6.18905 6.40188 6.84681 7.37701 8.93048 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.020853 B = 0.004167 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.421186 B = 6718.467092 C = 7747.981640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.114 3.886 3 N -0.361 5.361 4 N -0.275 5.275 5 C 0.142 3.858 6 C -0.085 4.085 7 C -0.261 4.261 8 N 0.068 4.932 9 O -0.159 6.159 10 O -0.167 6.167 11 C 0.356 3.644 12 N -0.588 5.588 13 C 0.062 3.938 14 C -0.090 4.090 15 C 0.027 3.973 16 C -0.543 4.543 17 H 0.067 0.933 18 C -0.002 4.002 19 N -0.933 5.933 20 Si 0.969 3.031 21 H -0.258 1.258 22 H -0.280 1.280 23 H -0.278 1.278 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.113 0.887 27 H 0.125 0.875 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.073 0.927 32 H 0.389 0.611 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.067 0.933 37 H -0.014 1.014 38 H -0.006 1.006 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.357 -11.455 -20.494 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.004 4.004 3 N -0.147 5.147 4 N -0.096 5.096 5 C -0.028 4.028 6 C -0.143 4.143 7 C -0.358 4.358 8 N 0.593 4.407 9 O -0.381 6.381 10 O -0.386 6.386 11 C 0.123 3.877 12 N -0.220 5.220 13 C -0.066 4.066 14 C -0.128 4.128 15 C -0.011 4.011 16 C -0.580 4.580 17 H 0.085 0.915 18 C -0.200 4.200 19 N -0.573 5.573 20 Si 0.793 3.207 21 H -0.182 1.182 22 H -0.206 1.206 23 H -0.204 1.204 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.132 0.868 27 H 0.143 0.857 28 H 0.139 0.861 29 H 0.123 0.877 30 H 0.130 0.870 31 H 0.092 0.908 32 H 0.218 0.782 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.005 0.995 38 H 0.012 0.988 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.399 -12.856 -21.718 25.276 hybrid contribution -0.317 1.223 1.953 2.326 sum -1.716 -11.633 -19.765 22.998 Atomic orbital electron populations 1.22222 0.92543 1.05324 1.02590 1.22430 0.96492 0.73986 1.07494 1.48936 1.51022 1.13738 1.00959 1.77510 1.24772 1.00963 1.06380 1.22354 0.95210 0.96322 0.88899 1.20544 1.04849 0.90506 0.98434 1.20261 1.33259 0.89838 0.92441 1.42770 0.99816 1.00369 0.97712 1.94523 1.01322 1.80293 1.61947 1.94588 1.51757 1.38244 1.54013 1.18839 0.92971 0.88295 0.87545 1.57149 1.50507 1.16574 0.97728 1.22471 1.00676 0.90424 0.92983 1.21439 1.02246 0.99039 0.90047 1.18916 0.94953 0.93326 0.93924 1.21641 1.49652 0.93551 0.93201 0.91453 1.26037 0.94818 0.94982 1.04132 1.70138 1.50861 1.02852 1.33399 0.85346 0.77713 0.79046 0.78598 1.18150 1.20616 1.20378 0.92711 0.92358 0.86823 0.85688 0.86136 0.87670 0.86957 0.90845 0.78160 0.92631 0.92832 0.90489 0.91416 0.99515 0.98795 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.62 10.24 71.98 0.74 -0.89 16 2 C 0.11 1.29 6.85 86.38 0.59 1.88 16 3 N -0.36 -7.68 3.62 -345.18 -1.25 -8.93 16 4 N -0.27 -6.54 12.56 -47.45 -0.60 -7.13 16 5 C 0.14 3.65 7.21 43.08 0.31 3.96 16 6 C -0.09 -1.58 10.44 71.24 0.74 -0.84 16 7 C -0.26 -8.18 6.32 36.26 0.23 -7.95 16 8 N 0.07 2.52 2.40 -46.71 -0.11 2.41 16 9 O -0.16 -6.29 18.60 18.89 0.35 -5.94 16 10 O -0.17 -6.81 17.55 18.89 0.33 -6.47 16 11 C 0.36 9.72 7.24 131.42 0.95 10.68 16 12 N -0.59 -15.86 6.55 -344.29 -2.26 -18.12 16 13 C 0.06 2.21 4.10 86.31 0.35 2.57 16 14 C -0.09 -3.55 5.34 30.60 0.16 -3.39 16 15 C 0.03 1.42 4.97 29.85 0.15 1.57 16 16 C -0.54 -30.68 9.11 25.60 0.23 -30.45 16 17 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 18 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 19 N -0.93 -57.88 13.29 21.45 0.28 -57.59 16 20 Si 0.97 44.13 29.54 68.60 2.03 46.16 16 21 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 27 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.12 0.95 7.63 -2.38 -0.02 0.94 16 29 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.39 7.70 7.90 -89.69 -0.71 6.99 16 33 H 0.06 2.32 5.45 -2.38 -0.01 2.31 16 34 H 0.05 2.03 7.35 -2.39 -0.02 2.01 16 35 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 37 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 38 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 39 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -74.18 336.65 4.06 -70.12 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: 0.36 Total: 8.00 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 4.92 Total: -22.49 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -3.93 Total: -89.36 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.68 Total: -12.41 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -74.18 4.06 -70.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192565791.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.414 kcal (2) G-P(sol) polarization free energy of solvation -74.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds