Wall clock time and date at job start Tue Mar 31 2020 05:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47148 * 2 1 4 4 H 1.09005 * 109.47351 * 51.96538 * 3 2 1 5 5 C 1.50699 * 109.47139 * 171.96708 * 3 2 1 6 6 H 1.07999 * 119.99736 * 120.00237 * 5 3 2 7 7 C 1.37875 * 120.00086 * 299.99775 * 5 3 2 8 8 N 1.31514 * 120.00031 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00035 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46921 * 60.00163 * 9 7 5 11 11 H 1.48496 * 109.47065 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47244 * 300.00580 * 9 7 5 13 13 N 1.46906 * 109.47080 * 291.96814 * 3 2 1 14 14 C 1.39207 * 110.99765 * 84.95581 * 13 3 2 15 15 C 1.36172 * 126.22036 * 49.69418 * 14 13 3 16 16 N 1.48035 * 126.09590 * 0.25697 * 15 14 13 17 17 O 1.21801 * 119.99605 * 81.94522 * 16 15 14 18 18 O 1.21795 * 120.00155 * 261.94525 * 16 15 14 19 19 C 1.39770 * 107.81064 * 180.25921 * 15 14 13 20 20 C 1.50704 * 125.83900 * 180.02562 * 19 15 14 21 21 N 1.30838 * 108.32743 * 0.02562 * 19 15 14 22 22 N 1.35251 * 126.22050 * 230.00028 * 14 13 3 23 23 C 1.46506 * 126.03918 * 359.73861 * 22 14 13 24 24 C 1.53000 * 109.46812 * 96.77048 * 23 22 14 25 25 H 1.08993 * 109.47250 * 60.05823 * 1 2 3 26 26 H 1.08993 * 109.47226 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46856 * 300.06539 * 1 2 3 28 28 H 1.08998 * 109.46933 * 240.00179 * 2 1 3 29 29 H 1.08996 * 109.47236 * 119.99778 * 2 1 3 30 30 H 0.96996 * 120.00085 * 179.97438 * 8 7 5 31 31 H 1.00900 * 111.00157 * 208.90849 * 13 3 2 32 32 H 1.09003 * 109.46852 * 269.98192 * 20 19 15 33 33 H 1.09000 * 109.47266 * 29.97836 * 20 19 15 34 34 H 1.09000 * 109.47332 * 149.98489 * 20 19 15 35 35 H 1.08996 * 109.46780 * 216.76799 * 23 22 14 36 36 H 1.09001 * 109.47034 * 336.76995 * 23 22 14 37 37 H 1.09003 * 109.46989 * 51.00833 * 24 23 22 38 38 H 1.09005 * 109.46659 * 171.00526 * 24 23 22 39 39 H 1.08996 * 109.47118 * 291.00799 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5642 1.9962 0.8095 5 6 3.5339 1.4471 0.1985 6 1 4.1773 1.8783 -0.5541 7 6 4.0792 0.9011 1.3411 8 7 3.2957 0.3758 2.2575 9 14 5.9309 0.9062 1.5869 10 1 6.4264 2.3062 1.5865 11 1 6.2597 0.2646 2.8851 12 1 6.5788 0.1516 0.4841 13 7 1.7147 2.0769 -1.2845 14 6 0.4230 2.5957 -1.2717 15 6 -0.1122 3.3984 -0.3107 16 7 0.5782 3.8807 0.9068 17 8 1.3138 4.8496 0.8462 18 8 0.4107 3.3086 1.9689 19 6 -1.4296 3.6857 -0.6786 20 6 -2.3956 4.5433 0.0978 21 7 -1.6810 3.0829 -1.8123 22 7 -0.5304 2.3894 -2.2085 23 6 -0.3854 1.5827 -3.4228 24 6 -0.9471 0.1814 -3.1742 25 1 -0.3633 0.5129 -0.8904 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5149 0.8895 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.6793 -0.0087 3.0611 31 1 2.3889 2.7910 -1.5161 32 1 -2.9528 3.9205 0.7976 33 1 -1.8436 5.3046 0.6489 34 1 -3.0890 5.0249 -0.5917 35 1 -0.9324 2.0538 -4.2394 36 1 0.6697 1.5096 -3.6867 37 1 -1.9513 0.2611 -2.7577 38 1 -0.9868 -0.3664 -4.1158 39 1 -0.3036 -0.3487 -2.4722 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192770045.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:30 Heat of formation + Delta-G solvation = 79.635155 kcal Electronic energy + Delta-G solvation = -24101.961950 eV Core-core repulsion = 20664.207636 eV Total energy + Delta-G solvation = -3437.754314 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.08056 -40.77828 -36.73089 -35.72438 -34.89394 -32.98925 -31.56339 -30.81802 -29.53206 -27.83921 -26.76350 -25.11806 -23.18346 -22.74607 -20.93677 -20.08682 -19.70581 -18.36299 -17.99865 -17.17247 -16.56463 -15.87124 -15.66295 -14.86676 -14.78150 -14.31961 -13.99599 -13.46454 -13.28085 -12.91935 -12.67581 -12.57260 -12.33034 -12.09323 -11.87979 -11.51023 -11.32775 -11.01407 -10.94345 -10.91019 -10.86049 -10.42428 -10.40299 -10.29279 -10.18387 -9.82944 -9.18998 -9.07307 -8.96132 -8.60357 -8.09491 -6.13357 -4.24593 1.24336 1.59933 1.79923 2.25611 2.58226 3.27759 3.32780 3.34546 4.14723 4.32817 4.51785 4.71434 4.95872 4.97148 5.17337 5.20404 5.31981 5.45586 5.54131 5.55470 5.61852 5.84082 6.07028 6.10574 6.16799 6.19411 6.33022 6.55989 6.79913 6.83834 7.01530 7.02933 7.17437 7.41862 7.50440 7.60816 7.76015 8.05458 8.20917 8.34553 8.76976 9.41862 10.91621 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.017854 B = 0.007359 C = 0.006039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.934945 B = 3803.896661 C = 4635.584255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.108 4.108 3 C 0.213 3.787 4 H 0.031 0.969 5 C -0.536 4.536 6 H 0.063 0.937 7 C 0.072 3.928 8 N -0.874 5.874 9 Si 0.902 3.098 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.277 1.277 13 N -0.638 5.638 14 C 0.379 3.621 15 C -0.231 4.231 16 N 0.064 4.936 17 O -0.158 6.158 18 O -0.125 6.125 19 C 0.129 3.871 20 C -0.082 4.082 21 N -0.280 5.280 22 N -0.348 5.348 23 C 0.135 3.865 24 C -0.176 4.176 25 H 0.045 0.955 26 H 0.035 0.965 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.102 0.898 30 H 0.266 0.734 31 H 0.369 0.631 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.019 2.735 -8.660 12.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.146 4.146 3 C 0.109 3.891 4 H 0.049 0.951 5 C -0.575 4.575 6 H 0.081 0.919 7 C -0.133 4.133 8 N -0.510 5.510 9 Si 0.729 3.271 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.202 1.202 13 N -0.277 5.277 14 C 0.151 3.849 15 C -0.327 4.327 16 N 0.593 4.407 17 O -0.377 6.377 18 O -0.351 6.351 19 C -0.040 4.040 20 C -0.140 4.140 21 N -0.103 5.103 22 N -0.130 5.130 23 C 0.015 3.985 24 C -0.234 4.234 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.198 0.802 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.126 0.874 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.334 1.514 -10.480 14.796 hybrid contribution 1.862 0.749 1.513 2.514 sum -8.472 2.263 -8.967 12.542 Atomic orbital electron populations 1.22159 0.99599 0.99538 1.00607 1.21592 0.91485 0.98799 1.02726 1.19709 0.96837 0.91848 0.80731 0.95107 1.20970 0.90043 1.41271 1.05167 0.91934 1.24860 0.98577 0.94549 0.95317 1.69865 1.34910 1.37471 1.08773 0.86492 0.84627 0.78518 0.77435 1.19969 1.21029 1.20213 1.57782 0.96665 1.33268 1.40030 1.18824 0.90868 0.88579 0.86675 1.20916 0.97359 1.18503 0.95966 1.42365 0.98324 0.98790 1.01202 1.94490 1.33328 1.17383 1.92503 1.94568 1.66659 1.57115 1.16724 1.21839 0.91458 0.97288 0.93371 1.20342 0.97029 0.97749 0.98902 1.77442 1.05291 1.13550 1.13968 1.48656 1.07296 1.38311 1.18783 1.21798 1.03999 0.90402 0.82317 1.22318 1.02348 0.95340 1.03394 0.93642 0.94619 0.93645 0.94193 0.88000 0.92352 0.80203 0.89320 0.90541 0.89626 0.88971 0.87441 0.91797 0.90539 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 8.61 37.16 0.32 -3.02 16 2 C -0.11 -2.52 5.46 -26.73 -0.15 -2.67 16 3 C 0.21 5.16 2.12 -68.86 -0.15 5.02 16 4 H 0.03 0.84 4.13 -51.93 -0.21 0.62 16 5 C -0.54 -14.18 8.59 -34.44 -0.30 -14.47 16 6 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 7 C 0.07 1.93 5.28 -17.82 -0.09 1.83 16 8 N -0.87 -24.43 11.29 55.43 0.63 -23.81 16 9 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.64 -12.92 6.17 -54.82 -0.34 -13.26 16 14 C 0.38 7.17 4.48 -153.41 -0.69 6.49 16 15 C -0.23 -4.56 6.21 -80.11 -0.50 -5.05 16 16 N 0.06 1.41 3.29 33.88 0.11 1.52 16 17 O -0.16 -3.55 19.26 -29.46 -0.57 -4.11 16 18 O -0.13 -2.99 17.64 -29.46 -0.52 -3.51 16 19 C 0.13 2.17 7.21 -82.44 -0.59 1.58 16 20 C -0.08 -1.04 10.44 36.01 0.38 -0.67 16 21 N -0.28 -4.58 12.56 33.65 0.42 -4.15 16 22 N -0.35 -5.60 2.92 -60.45 -0.18 -5.78 16 23 C 0.14 1.65 7.11 -4.04 -0.03 1.62 16 24 C -0.18 -2.06 9.20 37.16 0.34 -1.72 16 25 H 0.04 0.85 2.71 -51.93 -0.14 0.71 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.10 2.69 5.90 -51.93 -0.31 2.39 16 30 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.37 7.33 8.25 -39.29 -0.32 7.01 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.11 1.26 7.95 -51.93 -0.41 0.85 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 1.10 6.16 -51.93 -0.32 0.78 16 LS Contribution 323.01 15.07 4.87 4.87 Total: -1.00 -29.91 323.01 -7.10 -37.02 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -5.06 Total: 6.38 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -1.45 Total: -11.06 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.65 Total: -45.48 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -1.09 Total: -7.63 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.91 -7.10 -37.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192770045.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.652 kcal (2) G-P(sol) polarization free energy of solvation -29.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds