Wall clock time and date at job start Tue Mar 31 2020 05:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47170 * 2 1 4 4 H 1.08996 * 109.47338 * 305.40309 * 3 2 1 5 5 C 1.50701 * 109.47124 * 185.39936 * 3 2 1 6 6 H 1.08003 * 119.99655 * 244.85284 * 5 3 2 7 7 C 1.37877 * 120.00236 * 64.85755 * 5 3 2 8 8 N 1.31507 * 120.00246 * 195.78667 * 7 5 3 9 9 Si 1.86805 * 119.99703 * 15.78270 * 7 5 3 10 10 H 1.48498 * 109.47307 * 87.25636 * 9 7 5 11 11 H 1.48502 * 109.46878 * 207.25520 * 9 7 5 12 12 H 1.48503 * 109.47116 * 327.25567 * 9 7 5 13 13 N 1.46901 * 109.47005 * 65.39936 * 3 2 1 14 14 C 1.39207 * 110.99993 * 262.34821 * 13 3 2 15 15 C 1.36170 * 126.22201 * 330.12490 * 14 13 3 16 16 N 1.48041 * 126.08728 * 359.97438 * 15 14 13 17 17 O 1.21801 * 119.99634 * 98.59934 * 16 15 14 18 18 O 1.21794 * 120.00053 * 278.58972 * 16 15 14 19 19 C 1.39761 * 107.81434 * 179.84808 * 15 14 13 20 20 C 1.50707 * 125.83910 * 180.16458 * 19 15 14 21 21 N 1.30839 * 108.32509 * 0.42729 * 19 15 14 22 22 N 1.35251 * 126.21915 * 150.44589 * 14 13 3 23 23 C 1.46503 * 126.04493 * 359.96758 * 22 14 13 24 24 C 1.52999 * 109.46564 * 94.99069 * 23 22 14 25 25 H 1.08996 * 109.46945 * 65.93197 * 1 2 3 26 26 H 1.09003 * 109.46636 * 185.92618 * 1 2 3 27 27 H 1.08995 * 109.46952 * 305.92917 * 1 2 3 28 28 H 1.09000 * 109.47288 * 240.00026 * 2 1 3 29 29 H 1.09001 * 109.47295 * 120.00215 * 2 1 3 30 30 H 0.97002 * 120.00236 * 180.02562 * 8 7 5 31 31 H 1.00901 * 111.00275 * 26.30019 * 13 3 2 32 32 H 1.09000 * 109.47193 * 270.28097 * 20 19 15 33 33 H 1.08998 * 109.46878 * 30.27812 * 20 19 15 34 34 H 1.08998 * 109.47002 * 150.27752 * 20 19 15 35 35 H 1.08996 * 109.47185 * 214.99472 * 23 22 14 36 36 H 1.09004 * 109.46749 * 334.99784 * 23 22 14 37 37 H 1.08992 * 109.47528 * 304.99096 * 24 23 22 38 38 H 1.09008 * 109.47020 * 64.99762 * 24 23 22 39 39 H 1.09003 * 109.47057 * 184.98937 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5999 1.9835 -0.8376 5 6 3.5411 1.4446 -0.1337 6 1 4.1546 1.8160 0.6738 7 6 4.1312 0.9724 -1.2869 8 7 5.4136 0.6812 -1.2976 9 14 3.1090 0.7462 -2.8340 10 1 3.0783 2.0194 -3.5976 11 1 3.7114 -0.3202 -3.6737 12 1 1.7247 0.3594 -2.4605 13 7 1.6596 2.0963 1.2593 14 6 0.5033 2.8545 1.0983 15 6 0.0993 3.4728 -0.0457 16 7 0.8126 3.4592 -1.3429 17 8 0.4693 2.6852 -2.2185 18 8 1.7425 4.2220 -1.5345 19 6 -1.1102 4.1199 0.2222 20 6 -1.9166 4.9264 -0.7630 21 7 -1.4198 3.9105 1.4761 22 7 -0.4199 3.1161 2.0514 23 6 -0.3814 2.6504 3.4399 24 6 0.2477 3.7302 4.3226 25 1 -0.3633 0.4191 -0.9383 26 1 -0.3633 -1.0222 0.1061 27 1 -0.3633 0.6030 0.8321 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 5.8288 0.3493 -2.1090 31 1 1.5479 1.4192 1.9990 32 1 -1.5938 5.9670 -0.7311 33 1 -1.7656 4.5298 -1.7669 34 1 -2.9734 4.8656 -0.5034 35 1 -1.3956 2.4459 3.7828 36 1 0.2136 1.7391 3.5010 37 1 1.2273 3.9980 3.9268 38 1 -0.3939 4.6114 4.3316 39 1 0.3577 3.3505 5.3384 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192770072.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:35 Heat of formation + Delta-G solvation = 95.301492 kcal Electronic energy + Delta-G solvation = -24236.302949 eV Core-core repulsion = 20799.227979 eV Total energy + Delta-G solvation = -3437.074970 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.24814 -40.84806 -37.32100 -35.71512 -35.07469 -32.88884 -31.83777 -31.15150 -29.54335 -28.17988 -27.16509 -25.29405 -23.06547 -22.83134 -21.32524 -20.62358 -19.87201 -18.34541 -18.03457 -17.29960 -16.79159 -16.26921 -15.57376 -15.33570 -14.60577 -14.39296 -14.19140 -13.70949 -13.50956 -13.16554 -12.82478 -12.65130 -12.48324 -12.24242 -12.04747 -11.94823 -11.57043 -11.21597 -11.20666 -10.97564 -10.90919 -10.82843 -10.44984 -10.35615 -10.22178 -10.03311 -9.55962 -9.36171 -9.08983 -8.46254 -7.97082 -6.19348 -4.18082 1.24308 1.67444 1.73999 2.28048 2.55406 3.38915 3.46448 3.62100 3.89991 4.26306 4.42093 4.57929 4.74622 4.83695 4.92478 5.03337 5.14516 5.36189 5.43647 5.44778 5.52512 5.56496 5.64549 5.71534 5.73917 5.90311 5.95611 6.11866 6.23619 6.30469 6.43975 6.63045 6.82813 7.03773 7.08253 7.30364 7.52364 7.54016 8.34882 8.37603 8.87379 9.42048 10.91483 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.018337 B = 0.008160 C = 0.006808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.607494 B = 3430.419883 C = 4111.803441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.151 4.151 3 C 0.173 3.827 4 H 0.055 0.945 5 C -0.521 4.521 6 H 0.084 0.916 7 C 0.088 3.912 8 N -0.880 5.880 9 Si 0.848 3.152 10 H -0.260 1.260 11 H -0.289 1.289 12 H -0.245 1.245 13 N -0.573 5.573 14 C 0.379 3.621 15 C -0.243 4.243 16 N 0.081 4.919 17 O -0.180 6.180 18 O -0.127 6.127 19 C 0.145 3.855 20 C -0.083 4.083 21 N -0.287 5.287 22 N -0.387 5.387 23 C 0.133 3.867 24 C -0.171 4.171 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.031 0.969 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.268 0.732 31 H 0.359 0.641 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.209 3.114 7.527 16.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.190 4.190 3 C 0.067 3.933 4 H 0.072 0.928 5 C -0.559 4.559 6 H 0.102 0.898 7 C -0.117 4.117 8 N -0.516 5.516 9 Si 0.673 3.327 10 H -0.185 1.185 11 H -0.215 1.215 12 H -0.169 1.169 13 N -0.200 5.200 14 C 0.148 3.852 15 C -0.340 4.340 16 N 0.602 4.398 17 O -0.387 6.387 18 O -0.354 6.354 19 C -0.025 4.025 20 C -0.142 4.142 21 N -0.108 5.108 22 N -0.174 5.174 23 C 0.013 3.987 24 C -0.229 4.229 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.186 0.814 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -14.785 3.583 9.065 17.709 hybrid contribution 0.055 -0.938 -1.570 1.830 sum -14.729 2.645 7.495 16.737 Atomic orbital electron populations 1.21964 0.97827 1.00574 1.01301 1.22618 0.93287 0.99799 1.03297 1.20532 0.99248 0.89823 0.83652 0.92809 1.20564 0.87090 1.44002 1.04202 0.89800 1.24766 0.94933 0.93492 0.98494 1.69925 1.11329 1.41855 1.28474 0.87429 0.81775 0.79373 0.84096 1.18474 1.21516 1.16903 1.57545 1.21243 1.27888 1.13282 1.19221 0.84785 0.94360 0.86838 1.19724 1.02697 1.25415 0.86204 1.42341 0.98813 0.97742 1.00890 1.94488 1.70503 1.35748 1.37946 1.94567 1.18943 1.35823 1.86073 1.21769 0.91404 0.96105 0.93215 1.20358 0.99336 0.98766 0.95701 1.77411 1.10385 1.16078 1.06974 1.48382 1.16207 1.43296 1.09555 1.21721 1.03793 0.97685 0.75506 1.22204 1.02156 0.99080 0.99508 0.92064 0.93086 0.94968 0.90079 0.92016 0.92243 0.81374 0.89490 0.90175 0.89558 0.88161 0.88906 0.91275 0.91465 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.56 37.16 0.36 -2.46 16 2 C -0.15 -3.12 4.59 -26.73 -0.12 -3.24 16 3 C 0.17 3.98 1.62 -68.86 -0.11 3.87 16 4 H 0.06 1.31 1.36 -59.32 -0.08 1.23 16 5 C -0.52 -14.44 9.27 -34.44 -0.32 -14.76 16 6 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16 7 C 0.09 2.54 5.32 -17.82 -0.09 2.44 16 8 N -0.88 -26.51 13.96 55.43 0.77 -25.74 16 9 Si 0.85 21.84 24.47 -169.99 -4.16 17.68 16 10 H -0.26 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.24 -5.97 5.36 56.52 0.30 -5.67 16 13 N -0.57 -11.24 6.20 -54.83 -0.34 -11.58 16 14 C 0.38 6.97 5.25 -153.41 -0.81 6.16 16 15 C -0.24 -4.78 6.27 -80.11 -0.50 -5.28 16 16 N 0.08 1.82 2.45 33.88 0.08 1.90 16 17 O -0.18 -4.12 16.22 -29.46 -0.48 -4.60 16 18 O -0.13 -3.05 19.17 -29.46 -0.56 -3.62 16 19 C 0.15 2.39 7.21 -82.44 -0.59 1.80 16 20 C -0.08 -1.04 10.44 36.01 0.38 -0.66 16 21 N -0.29 -4.52 12.56 33.65 0.42 -4.10 16 22 N -0.39 -5.83 3.62 -60.45 -0.22 -6.04 16 23 C 0.13 1.39 7.10 -4.04 -0.03 1.36 16 24 C -0.17 -1.63 10.24 37.16 0.38 -1.24 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.52 6.23 -51.93 -0.32 0.20 16 28 H 0.08 1.82 4.94 -51.93 -0.26 1.56 16 29 H 0.06 1.18 8.02 -51.93 -0.42 0.76 16 30 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 31 H 0.36 5.91 6.89 -39.29 -0.27 5.64 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.83 6.94 -51.93 -0.36 0.47 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 319.12 15.07 4.81 4.81 Total: -1.00 -33.01 319.12 -6.31 -39.32 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.17 Total: 3.98 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -1.47 Total: -12.01 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.72 Total: -45.56 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -1.04 Total: -8.22 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.16 Total: 17.68 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.01 -6.31 -39.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192770072.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.622 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds