Wall clock time and date at job start Tue Mar 31 2020 07:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47105 * 2 1 4 4 C 1.52997 * 109.47086 * 239.99187 * 2 1 3 5 5 C 1.50699 * 109.46857 * 60.00366 * 4 2 1 6 6 H 1.08003 * 119.99963 * 0.02562 * 5 4 2 7 7 C 1.37884 * 120.00204 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99565 * 0.02562 * 7 5 4 9 9 Si 1.86790 * 120.00144 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47376 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47084 * 120.00373 * 9 7 5 12 12 H 1.48497 * 109.47286 * 240.00177 * 9 7 5 13 13 C 1.53002 * 109.46800 * 119.99598 * 2 1 3 14 14 O 1.45206 * 109.47129 * 299.99943 * 13 2 1 15 15 C 1.34232 * 116.99878 * 180.02562 * 14 13 2 16 16 O 1.20825 * 120.00049 * 0.02562 * 15 14 13 17 17 C 1.50695 * 119.99727 * 180.02562 * 15 14 13 18 18 H 1.08999 * 110.66783 * 61.76283 * 17 15 14 19 19 C 1.55000 * 110.74906 * 298.54377 * 17 15 14 20 20 C 1.55825 * 102.79106 * 241.67845 * 19 17 15 21 21 H 1.09002 * 115.38446 * 158.11051 * 20 19 17 22 22 C 1.55823 * 105.32343 * 287.31084 * 20 19 17 23 23 C 1.55004 * 102.78842 * 72.69050 * 22 20 19 24 24 C 1.55820 * 110.74745 * 185.17833 * 17 15 14 25 25 H 1.08999 * 115.38971 * 320.21346 * 24 17 15 26 26 O 1.46531 * 101.24180 * 32.41737 * 20 19 17 27 27 H 1.09002 * 109.47021 * 300.00084 * 1 2 3 28 28 H 1.09001 * 109.46630 * 60.00327 * 1 2 3 29 29 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46778 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46652 * 299.99654 * 3 2 1 32 32 H 1.08992 * 109.47514 * 59.99565 * 3 2 1 33 33 H 1.09004 * 109.46976 * 180.02562 * 4 2 1 34 34 H 1.08992 * 109.47530 * 299.99942 * 4 2 1 35 35 H 0.97002 * 119.99803 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.46930 * 180.02562 * 13 2 1 37 37 H 1.09000 * 109.47312 * 60.00000 * 13 2 1 38 38 H 1.09003 * 110.75040 * 0.02562 * 19 17 15 39 39 H 1.09001 * 110.74714 * 123.35063 * 19 17 15 40 40 H 1.09002 * 110.74367 * 191.01372 * 22 20 19 41 41 H 1.08995 * 110.74813 * 314.36207 * 22 20 19 42 42 H 1.08992 * 110.74649 * 241.67173 * 23 22 20 43 43 H 1.08997 * 110.90536 * 118.39094 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5378 -0.0111 -2.4796 6 1 0.9172 0.8673 -2.3806 7 6 1.8713 -0.4819 -3.7319 8 7 2.6273 -1.5513 -3.8525 9 14 1.2481 0.3981 -5.2571 10 1 0.4227 1.5646 -4.8531 11 1 2.4028 0.8655 -6.0655 12 1 0.4238 -0.5358 -6.0655 13 6 2.0400 -0.7212 1.2493 14 8 1.5560 -0.0366 2.4349 15 6 1.9170 -0.5463 3.6230 16 8 2.6148 -1.5315 3.6708 17 6 1.4521 0.1104 4.8972 18 1 0.3644 0.0917 4.9649 19 6 1.9833 1.5634 4.9916 20 6 2.8659 1.5253 6.2752 21 1 3.6255 2.3041 6.3432 22 6 1.8612 1.4475 7.4637 23 6 1.3301 -0.0057 7.3693 24 6 2.0983 -0.5744 6.1387 25 1 2.1763 -1.6603 6.0857 26 8 3.3687 0.1495 6.2354 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1301 -0.7218 -1.2489 34 1 1.6768 -1.7490 -1.2490 35 1 2.8616 -1.8828 -4.7335 36 1 3.1301 -0.7208 1.2496 37 1 1.6767 -1.7488 1.2494 38 1 2.5839 1.8127 4.1168 39 1 1.1604 2.2685 5.1096 40 1 2.3722 1.6110 8.4126 41 1 1.0508 2.1642 7.3318 42 1 0.2549 -0.0129 7.1904 43 1 1.5739 -0.5682 8.2705 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195044289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:51 Heat of formation + Delta-G solvation = -140.928816 kcal Electronic energy + Delta-G solvation = -22923.946101 eV Core-core repulsion = 19547.875009 eV Total energy + Delta-G solvation = -3376.071093 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.38312 -39.70606 -37.12082 -35.35345 -32.72172 -32.32427 -31.32378 -29.98164 -27.31384 -26.44009 -26.41345 -23.99287 -22.80515 -21.97536 -20.92496 -19.96800 -18.26649 -17.62385 -17.07324 -16.46994 -16.16376 -15.82002 -15.51901 -14.81734 -14.53680 -14.16661 -13.67081 -13.42138 -13.09217 -12.86537 -12.52361 -12.37362 -12.09759 -12.06744 -11.89295 -11.79835 -11.41391 -11.31521 -11.23957 -10.98568 -10.85770 -10.81305 -10.61067 -10.41996 -10.27436 -10.26657 -10.19792 -10.07242 -9.73334 -9.20669 -8.93501 -8.37335 -6.01225 -4.02336 2.38649 2.85135 3.30177 3.38138 3.41212 3.55774 4.12542 4.24850 4.36262 4.44719 4.52898 4.73822 4.83360 4.84624 4.97537 5.15779 5.21525 5.34513 5.49614 5.51335 5.51656 5.52621 5.64999 5.69657 5.77079 5.79226 5.82850 6.06276 6.19706 6.27366 6.38009 6.50524 6.64500 6.70473 6.84704 7.10503 7.11250 7.13688 7.61099 7.72653 7.96717 8.00023 8.39466 9.02294 9.60777 11.10512 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043071 B = 0.003257 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.935508 B = 8595.111003 C = 8788.593046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.058 4.058 3 C -0.125 4.125 4 C 0.034 3.966 5 C -0.509 4.509 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.079 3.921 14 O -0.349 6.349 15 C 0.465 3.535 16 O -0.507 6.507 17 C -0.115 4.115 18 H 0.119 0.881 19 C -0.136 4.136 20 C 0.057 3.943 21 H 0.133 0.867 22 C -0.148 4.148 23 C -0.148 4.148 24 C 0.084 3.916 25 H 0.140 0.860 26 O -0.365 6.365 27 H 0.038 0.962 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.038 0.962 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.260 0.740 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.129 6.669 22.026 23.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.059 4.059 3 C -0.182 4.182 4 C -0.003 4.003 5 C -0.547 4.547 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.006 3.994 14 O -0.266 6.266 15 C 0.307 3.693 16 O -0.395 6.395 17 C -0.134 4.134 18 H 0.137 0.863 19 C -0.174 4.174 20 C 0.000 4.000 21 H 0.151 0.849 22 C -0.186 4.186 23 C -0.186 4.186 24 C 0.026 3.974 25 H 0.157 0.843 26 O -0.284 6.284 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.057 0.943 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.599 6.171 21.862 22.999 hybrid contribution -0.391 0.239 -1.100 1.191 sum -3.990 6.410 20.762 22.093 Atomic orbital electron populations 1.21711 0.94864 1.00885 1.00781 1.20810 0.96112 0.96199 0.92733 1.21706 1.00014 0.95749 1.00769 1.19129 0.96390 0.95290 0.89464 1.21192 1.31142 1.12095 0.90284 0.92020 1.25023 0.95298 0.95102 0.99143 1.69979 1.37018 1.23081 1.23390 0.86556 0.78615 0.79683 0.83282 1.19715 1.21104 1.21104 1.23506 0.98937 0.95883 0.81099 1.86478 1.69331 1.55940 1.14818 1.23234 0.77696 0.82471 0.85884 1.90656 1.35073 1.25735 1.88062 1.22803 1.02832 0.96985 0.90816 0.86343 1.23257 1.00413 0.94165 0.99558 1.24785 0.94876 0.86485 0.93892 0.84899 1.23264 0.99102 0.96964 0.99264 1.23250 1.00382 0.96268 0.98660 1.24611 0.82899 0.98462 0.91388 0.84282 1.90165 1.26893 1.16974 1.94346 0.94261 0.91569 0.93801 0.93791 0.91574 0.94262 0.96356 0.96365 0.93063 0.91677 0.91688 0.89637 0.89120 0.90637 0.90259 0.90215 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.08 37.16 0.30 -2.08 16 2 C -0.06 -1.19 0.61 -154.50 -0.09 -1.28 16 3 C -0.13 -2.38 8.08 37.16 0.30 -2.08 16 4 C 0.03 0.86 4.04 -27.89 -0.11 0.75 16 5 C -0.51 -13.75 7.65 -34.44 -0.26 -14.01 16 6 H 0.06 1.61 5.68 -52.48 -0.30 1.31 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.08 1.50 4.32 37.16 0.16 1.66 16 14 O -0.35 -5.84 8.86 -39.26 -0.35 -6.19 16 15 C 0.46 7.25 7.11 36.00 0.26 7.50 16 16 O -0.51 -9.47 15.63 -18.75 -0.29 -9.76 16 17 C -0.11 -1.26 3.00 -89.21 -0.27 -1.52 16 18 H 0.12 1.01 7.81 -51.93 -0.41 0.60 16 19 C -0.14 -1.28 6.14 -24.17 -0.15 -1.43 16 20 C 0.06 0.51 5.71 -23.72 -0.14 0.37 16 21 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 22 C -0.15 -0.99 6.52 -24.17 -0.16 -1.15 16 23 C -0.15 -1.07 6.52 -24.17 -0.16 -1.23 16 24 C 0.08 0.89 4.64 -23.72 -0.11 0.78 16 25 H 0.14 1.54 7.72 -51.93 -0.40 1.14 16 26 O -0.37 -4.68 11.65 -35.23 -0.41 -5.09 16 27 H 0.04 0.65 7.68 -51.93 -0.40 0.26 16 28 H 0.07 1.32 6.62 -51.93 -0.34 0.97 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.32 6.62 -51.93 -0.34 0.98 16 32 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 37 H 0.06 1.26 8.13 -51.93 -0.42 0.83 16 38 H 0.08 0.95 7.76 -51.93 -0.40 0.54 16 39 H 0.09 0.64 7.80 -51.93 -0.41 0.23 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.41 7.80 -51.93 -0.41 0.00 16 42 H 0.08 0.45 7.81 -51.93 -0.41 0.05 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 340.72 15.07 5.13 5.13 Total: -1.00 -31.99 340.72 -7.88 -39.87 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -7.15 Total: -2.13 kcal Atomic # 6 Polarization: -11.73 SS G_CDS: -0.53 Total: -12.26 kcal Atomic # 7 Polarization: -26.63 SS G_CDS: 0.74 Total: -25.90 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -1.05 Total: -21.04 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.99 -7.88 -39.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195044289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.059 kcal (2) G-P(sol) polarization free energy of solvation -31.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds