Wall clock time and date at job start Tue Mar 31 2020 07:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47105 * 2 1 4 4 C 1.52997 * 109.47086 * 239.99187 * 2 1 3 5 5 C 1.50699 * 109.46857 * 60.00366 * 4 2 1 6 6 H 1.08003 * 119.99963 * 0.02562 * 5 4 2 7 7 C 1.37884 * 120.00204 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99565 * 0.02562 * 7 5 4 9 9 Si 1.86790 * 120.00144 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47376 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47084 * 120.00373 * 9 7 5 12 12 H 1.48497 * 109.47286 * 240.00177 * 9 7 5 13 13 C 1.53002 * 109.46800 * 119.99598 * 2 1 3 14 14 O 1.45206 * 109.47129 * 299.99943 * 13 2 1 15 15 C 1.34232 * 116.99878 * 180.02562 * 14 13 2 16 16 O 1.20825 * 120.00049 * 0.02562 * 15 14 13 17 17 C 1.50695 * 119.99727 * 180.02562 * 15 14 13 18 18 H 1.08999 * 110.66783 * 61.76283 * 17 15 14 19 19 C 1.55000 * 110.74906 * 298.54377 * 17 15 14 20 20 C 1.55825 * 102.79106 * 241.67845 * 19 17 15 21 21 H 1.09002 * 115.38446 * 158.11051 * 20 19 17 22 22 C 1.55823 * 105.32343 * 287.31084 * 20 19 17 23 23 C 1.55004 * 102.78842 * 72.69050 * 22 20 19 24 24 C 1.55820 * 110.74745 * 185.17833 * 17 15 14 25 25 H 1.08999 * 115.38971 * 320.21346 * 24 17 15 26 26 O 1.46531 * 101.24180 * 32.41737 * 20 19 17 27 27 H 1.09002 * 109.47021 * 300.00084 * 1 2 3 28 28 H 1.09001 * 109.46630 * 60.00327 * 1 2 3 29 29 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46778 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46652 * 299.99654 * 3 2 1 32 32 H 1.08992 * 109.47514 * 59.99565 * 3 2 1 33 33 H 1.09004 * 109.46976 * 180.02562 * 4 2 1 34 34 H 1.08992 * 109.47530 * 299.99942 * 4 2 1 35 35 H 0.97002 * 119.99803 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.46930 * 180.02562 * 13 2 1 37 37 H 1.09000 * 109.47312 * 60.00000 * 13 2 1 38 38 H 1.09003 * 110.75040 * 0.02562 * 19 17 15 39 39 H 1.09001 * 110.74714 * 123.35063 * 19 17 15 40 40 H 1.09002 * 110.74367 * 191.01372 * 22 20 19 41 41 H 1.08995 * 110.74813 * 314.36207 * 22 20 19 42 42 H 1.08992 * 110.74649 * 241.67173 * 23 22 20 43 43 H 1.08997 * 110.90536 * 118.39094 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5378 -0.0111 -2.4796 6 1 0.9172 0.8673 -2.3806 7 6 1.8713 -0.4819 -3.7319 8 7 2.6273 -1.5513 -3.8525 9 14 1.2481 0.3981 -5.2571 10 1 0.4227 1.5646 -4.8531 11 1 2.4028 0.8655 -6.0655 12 1 0.4238 -0.5358 -6.0655 13 6 2.0400 -0.7212 1.2493 14 8 1.5560 -0.0366 2.4349 15 6 1.9170 -0.5463 3.6230 16 8 2.6148 -1.5315 3.6708 17 6 1.4521 0.1104 4.8972 18 1 0.3644 0.0917 4.9649 19 6 1.9833 1.5634 4.9916 20 6 2.8659 1.5253 6.2752 21 1 3.6255 2.3041 6.3432 22 6 1.8612 1.4475 7.4637 23 6 1.3301 -0.0057 7.3693 24 6 2.0983 -0.5744 6.1387 25 1 2.1763 -1.6603 6.0857 26 8 3.3687 0.1495 6.2354 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1301 -0.7218 -1.2489 34 1 1.6768 -1.7490 -1.2490 35 1 2.8616 -1.8828 -4.7335 36 1 3.1301 -0.7208 1.2496 37 1 1.6767 -1.7488 1.2494 38 1 2.5839 1.8127 4.1168 39 1 1.1604 2.2685 5.1096 40 1 2.3722 1.6110 8.4126 41 1 1.0508 2.1642 7.3318 42 1 0.2549 -0.0129 7.1904 43 1 1.5739 -0.5682 8.2705 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195044289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:51 Heat of formation + Delta-G solvation = -159.521507 kcal Electronic energy + Delta-G solvation = -22924.752341 eV Core-core repulsion = 19547.875009 eV Total energy + Delta-G solvation = -3376.877332 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.30010 -40.89502 -38.69893 -36.89965 -34.43684 -33.51957 -32.03262 -30.67025 -29.30561 -27.97945 -27.97525 -25.42331 -24.30101 -22.75854 -21.73109 -20.92413 -19.92908 -18.78161 -18.37825 -18.01067 -17.62260 -16.89709 -16.54400 -16.34012 -15.73074 -15.23707 -15.15580 -14.89222 -14.57787 -14.05975 -14.01179 -13.75073 -13.57898 -13.03388 -12.85902 -12.72801 -12.69447 -12.58688 -12.54951 -12.34607 -12.24360 -12.08957 -11.95711 -11.91618 -11.86593 -11.68339 -11.39654 -11.28937 -11.00670 -10.96111 -10.87933 -10.54920 -8.16943 -6.25098 1.14706 1.41631 1.42251 1.54561 1.62141 2.43336 2.83939 3.17731 3.31259 3.49793 3.67913 3.83574 3.89826 3.91643 3.92429 4.05601 4.19412 4.23535 4.32737 4.44844 4.54196 4.56631 4.59515 4.72103 4.85368 4.97469 5.00476 5.03074 5.06719 5.09311 5.11631 5.16544 5.23278 5.40564 5.43537 5.44544 5.50656 5.51820 5.61751 5.72404 5.85882 6.26240 6.69405 6.89088 7.42799 8.96125 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043071 B = 0.003257 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.935508 B = 8595.111003 C = 8788.593046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.055 4.055 3 C -0.118 4.118 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.074 0.926 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.962 3.038 10 H -0.256 1.256 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.089 3.911 14 O -0.342 6.342 15 C 0.460 3.540 16 O -0.546 6.546 17 C -0.110 4.110 18 H 0.153 0.847 19 C -0.133 4.133 20 C 0.050 3.950 21 H 0.145 0.855 22 C -0.140 4.140 23 C -0.139 4.139 24 C 0.073 3.927 25 H 0.122 0.878 26 O -0.407 6.407 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.037 0.963 30 H 0.035 0.965 31 H 0.057 0.943 32 H 0.068 0.932 33 H -0.013 1.013 34 H -0.012 1.012 35 H 0.261 0.739 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.064 0.936 39 H 0.125 0.875 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.394 9.260 23.597 26.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.055 4.055 3 C -0.175 4.175 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.787 3.213 10 H -0.180 1.180 11 H -0.209 1.209 12 H -0.209 1.209 13 C 0.015 3.985 14 O -0.258 6.258 15 C 0.304 3.696 16 O -0.436 6.436 17 C -0.129 4.129 18 H 0.171 0.829 19 C -0.171 4.171 20 C -0.007 4.007 21 H 0.162 0.838 22 C -0.177 4.177 23 C -0.176 4.176 24 C 0.015 3.985 25 H 0.140 0.860 26 O -0.327 6.327 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.005 0.995 34 H 0.007 0.993 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.144 0.856 40 H 0.099 0.901 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.880 8.786 23.456 25.728 hybrid contribution 0.381 -0.615 -1.520 1.683 sum -5.499 8.170 21.936 24.045 Atomic orbital electron populations 1.21636 0.93217 1.00896 1.01759 1.20631 0.97332 0.96532 0.90987 1.21633 0.99508 0.94646 1.01739 1.18990 0.94345 0.94336 0.92091 1.21569 1.30593 1.12170 0.90839 0.90828 1.25972 0.95558 0.95861 1.02791 1.70130 1.38711 1.24967 1.24185 0.85435 0.78093 0.78826 0.78949 1.17969 1.20947 1.20871 1.23102 0.97898 0.95425 0.82084 1.86470 1.69190 1.55530 1.14638 1.24375 0.76665 0.81985 0.86537 1.90646 1.36888 1.27660 1.88385 1.23057 1.04657 0.97531 0.87643 0.82933 1.23332 1.01304 0.93492 0.98975 1.25083 0.95731 0.85108 0.94778 0.83750 1.23271 0.99124 0.96988 0.98347 1.23250 1.01186 0.96381 0.96829 1.24729 0.82956 0.97800 0.93001 0.86040 1.90134 1.28692 1.19235 1.94634 0.91264 0.92426 0.94347 0.94630 0.92378 0.91322 0.99514 0.99315 0.93057 0.93240 0.92693 0.91751 0.85644 0.90056 0.87686 0.87863 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.32 8.08 71.98 0.58 -3.74 16 2 C -0.05 -2.24 0.61 -52.18 -0.03 -2.27 16 3 C -0.12 -4.38 8.08 71.98 0.58 -3.80 16 4 C 0.04 2.07 4.04 29.85 0.12 2.19 16 5 C -0.51 -28.04 7.65 25.60 0.20 -27.85 16 6 H 0.07 3.78 5.68 -2.91 -0.02 3.76 16 7 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 8 N -0.94 -57.48 13.29 21.45 0.28 -57.19 16 9 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 10 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 13 C 0.09 3.45 4.32 71.98 0.31 3.76 16 14 O -0.34 -11.11 8.86 -51.44 -0.46 -11.56 16 15 C 0.46 14.13 7.11 71.23 0.51 14.64 16 16 O -0.55 -21.04 15.63 21.97 0.34 -20.70 16 17 C -0.11 -2.15 3.00 -9.88 -0.03 -2.18 16 18 H 0.15 1.95 7.81 -2.39 -0.02 1.93 16 19 C -0.13 -2.12 6.14 32.26 0.20 -1.92 16 20 C 0.05 0.77 5.71 32.55 0.19 0.96 16 21 H 0.14 1.77 8.14 -2.39 -0.02 1.76 16 22 C -0.14 -1.33 6.52 32.26 0.21 -1.12 16 23 C -0.14 -1.56 6.52 32.26 0.21 -1.35 16 24 C 0.07 1.46 4.64 32.54 0.15 1.61 16 25 H 0.12 2.76 7.72 -2.39 -0.02 2.75 16 26 O -0.41 -10.23 11.65 -148.98 -1.73 -11.97 16 27 H 0.07 2.11 7.68 -2.39 -0.02 2.10 16 28 H 0.06 2.20 6.62 -2.39 -0.02 2.18 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 2.24 6.62 -2.39 -0.02 2.22 16 32 H 0.07 2.13 7.68 -2.39 -0.02 2.11 16 33 H -0.01 -0.78 8.14 -2.38 -0.02 -0.80 16 34 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 35 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 36 H 0.05 2.05 8.13 -2.38 -0.02 2.03 16 37 H 0.05 2.22 8.13 -2.39 -0.02 2.20 16 38 H 0.06 1.31 7.76 -2.39 -0.02 1.29 16 39 H 0.13 1.13 7.80 -2.39 -0.02 1.11 16 40 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.10 0.50 7.80 -2.39 -0.02 0.48 16 42 H 0.10 0.69 7.81 -2.39 -0.02 0.68 16 43 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -72.12 340.72 5.10 -67.03 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 0.98 Total: 9.40 kcal Atomic # 6 Polarization: -24.54 SS G_CDS: 3.65 Total: -20.89 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.28 Total: -57.19 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -1.85 Total: -44.23 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -72.12 5.10 -67.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195044289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.493 kcal (2) G-P(sol) polarization free energy of solvation -72.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds