Wall clock time and date at job start Tue Mar 31 2020 06:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33640 * 122.75422 * 2 1 4 4 S 1.76194 * 107.92816 * 179.76157 * 3 2 1 5 5 C 1.70980 * 90.28213 * 0.27978 * 4 3 2 6 6 C 1.50701 * 124.91745 * 179.97438 * 5 4 3 7 7 H 1.08992 * 109.47284 * 164.70054 * 6 5 4 8 8 C 1.53002 * 109.46958 * 284.69972 * 6 5 4 9 9 N 1.46906 * 109.46922 * 44.69665 * 6 5 4 10 10 C 1.46903 * 110.99770 * 155.00349 * 9 6 5 11 11 C 1.52998 * 109.46854 * 180.02562 * 10 9 6 12 12 C 1.53003 * 109.46868 * 299.99274 * 11 10 9 13 13 C 1.52994 * 109.47548 * 59.99542 * 11 10 9 14 14 C 1.52999 * 109.46918 * 180.02562 * 11 10 9 15 15 C 1.50697 * 109.46990 * 179.97438 * 14 11 10 16 16 H 1.07998 * 120.00359 * 359.97438 * 15 14 11 17 17 C 1.37884 * 120.00060 * 179.97438 * 15 14 11 18 18 N 1.31511 * 119.99853 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00001 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47479 * 60.00090 * 19 17 15 21 21 H 1.48505 * 109.47192 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47296 * 299.99586 * 19 17 15 23 23 N 1.29026 * 110.16777 * 359.71635 * 5 4 3 24 24 H 1.09000 * 109.46912 * 270.02389 * 1 2 3 25 25 H 1.08999 * 109.46873 * 30.02330 * 1 2 3 26 26 H 1.09003 * 109.46964 * 150.02666 * 1 2 3 27 27 H 1.08002 * 126.03471 * 359.96984 * 3 2 1 28 28 H 1.09004 * 109.47006 * 179.97438 * 8 6 5 29 29 H 1.09002 * 109.47097 * 299.99808 * 8 6 5 30 30 H 1.09001 * 109.47142 * 59.99773 * 8 6 5 31 31 H 1.00899 * 110.99829 * 278.95499 * 9 6 5 32 32 H 1.09005 * 109.46479 * 299.99747 * 10 9 6 33 33 H 1.08996 * 109.47267 * 59.99984 * 10 9 6 34 34 H 1.09007 * 109.47060 * 60.00325 * 12 11 10 35 35 H 1.08997 * 109.46942 * 180.02562 * 12 11 10 36 36 H 1.08996 * 109.47498 * 300.00482 * 12 11 10 37 37 H 1.08998 * 109.47105 * 60.00261 * 13 11 10 38 38 H 1.08997 * 109.47481 * 180.02562 * 13 11 10 39 39 H 1.09000 * 109.47170 * 300.00341 * 13 11 10 40 40 H 1.08998 * 109.46986 * 299.99280 * 14 11 10 41 41 H 1.08996 * 109.47321 * 59.99595 * 14 11 10 42 42 H 0.97005 * 120.00245 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6731 0.0070 5 6 3.5039 -0.9819 0.0009 6 6 4.4834 -2.1272 0.0021 7 1 3.9652 -3.0483 0.2687 8 6 5.0991 -2.2733 -1.3909 9 7 5.5457 -1.8619 0.9816 10 6 6.1539 -3.1141 1.4506 11 6 7.2527 -2.7979 2.4673 12 6 8.3233 -1.9270 1.8068 13 6 6.6474 -2.0483 3.6558 14 6 7.8866 -4.1020 2.9553 15 6 8.9692 -3.7905 3.9563 16 1 9.1840 -2.7649 4.2178 17 6 9.6857 -4.8148 4.5382 18 7 9.4238 -6.0637 4.2201 19 14 11.0281 -4.4286 5.7783 20 1 10.4417 -3.7005 6.9321 21 1 11.6434 -5.6944 6.2522 22 1 12.0671 -3.5839 5.1362 23 7 2.2199 -1.1084 0.0004 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8903 -0.5134 27 1 1.8392 2.1308 -0.0005 28 1 5.8079 -3.1014 -1.3899 29 1 4.3109 -2.4701 -2.1177 30 1 5.6174 -1.3521 -1.6575 31 1 6.2438 -1.2420 0.5989 32 1 5.3912 -3.7344 1.9215 33 1 6.5848 -3.6483 0.6038 34 1 7.8720 -0.9978 1.4587 35 1 9.1063 -1.7020 2.5309 36 1 8.7545 -2.4609 0.9600 37 1 5.8847 -2.6688 4.1264 38 1 7.4302 -1.8226 4.3799 39 1 6.1961 -1.1192 3.3078 40 1 7.1241 -4.7228 3.4258 41 1 8.3179 -4.6356 2.1084 42 1 9.9281 -6.7844 4.6291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229696468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:47 Heat of formation + Delta-G solvation = 21.205792 kcal Electronic energy + Delta-G solvation = -20027.821075 eV Core-core repulsion = 17133.826289 eV Total energy + Delta-G solvation = -2893.994786 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.94385 -38.02031 -35.52636 -32.54438 -31.70293 -29.53092 -27.72403 -26.88827 -26.34013 -25.75396 -24.60979 -22.46847 -21.28215 -19.72497 -18.12144 -17.48416 -16.26399 -15.79858 -15.20038 -14.97994 -14.69546 -14.35084 -14.04691 -13.39571 -13.28947 -13.15928 -12.95654 -12.75653 -12.67087 -12.28059 -12.00685 -11.91866 -11.75176 -11.49605 -11.27078 -10.99015 -10.87862 -10.78628 -10.49528 -10.29361 -10.15588 -9.70597 -9.65396 -9.41926 -9.04758 -8.86930 -8.70156 -8.31087 -8.25749 -5.95788 -3.95964 0.69457 1.37811 1.78701 2.72833 3.35104 3.39854 3.41978 3.78016 4.46807 4.55926 4.80132 4.96814 5.01338 5.11180 5.19058 5.39975 5.40506 5.50413 5.55293 5.65631 5.67939 5.73669 5.79556 5.91849 5.99480 6.13746 6.23328 6.30154 6.48339 6.64784 6.76464 6.82631 7.11123 7.19895 7.24896 7.32171 7.52954 7.70145 7.74033 7.85082 8.04247 8.48393 9.09122 9.66789 11.15840 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.034036 B = 0.003301 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.450745 B = 8479.494010 C = 8570.670291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.068 3.932 3 C -0.281 4.281 4 S 0.137 5.863 5 C 0.083 3.917 6 C 0.153 3.847 7 H 0.107 0.893 8 C -0.177 4.177 9 N -0.680 5.680 10 C 0.072 3.928 11 C -0.058 4.058 12 C -0.129 4.129 13 C -0.117 4.117 14 C 0.035 3.965 15 C -0.508 4.508 16 H 0.059 0.941 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.888 3.112 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.278 1.278 23 N -0.480 5.480 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.172 0.828 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.342 0.658 32 H 0.070 0.930 33 H 0.030 0.970 34 H 0.032 0.968 35 H 0.065 0.935 36 H 0.041 0.959 37 H 0.039 0.961 38 H 0.055 0.945 39 H 0.041 0.959 40 H 0.015 0.985 41 H 0.013 0.987 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.367 13.240 -11.495 22.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.065 4.065 3 C -0.420 4.420 4 S 0.393 5.607 5 C -0.196 4.196 6 C 0.039 3.961 7 H 0.125 0.875 8 C -0.237 4.237 9 N -0.313 5.313 10 C -0.056 4.056 11 C -0.059 4.059 12 C -0.187 4.187 13 C -0.174 4.174 14 C -0.003 4.003 15 C -0.546 4.546 16 H 0.077 0.923 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.716 3.284 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.204 1.204 23 N -0.195 5.195 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.190 0.810 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.162 0.838 32 H 0.088 0.912 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.034 0.966 41 H 0.031 0.969 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.997 13.126 -10.904 21.450 hybrid contribution 0.354 -0.130 -0.003 0.377 sum -12.643 12.995 -10.907 21.159 Atomic orbital electron populations 1.20333 0.87402 1.03048 1.02875 1.20261 0.98105 0.86626 1.01517 1.26790 0.95813 1.03749 1.15636 1.83948 1.06584 1.03112 1.67037 1.27071 0.93680 0.98013 1.00788 1.20013 0.90736 0.93653 0.91692 0.87465 1.22512 1.01626 1.02862 0.96710 1.60569 1.15117 1.16967 1.38598 1.22178 0.97028 0.89025 0.97369 1.20641 0.92744 0.98713 0.93754 1.21780 0.99141 0.97416 1.00345 1.21603 0.99712 0.98600 0.97480 1.19110 0.95151 0.90160 0.95853 1.21195 1.17413 0.92637 1.23371 0.92339 1.25010 0.97416 0.95153 0.96965 1.69952 1.41377 0.98632 1.43778 0.86729 0.82331 0.77440 0.81918 1.20308 1.21453 1.20366 1.66087 1.04558 1.31622 1.17228 0.90719 0.90970 0.90708 0.81033 0.90839 0.91637 0.92148 0.83828 0.91159 0.95173 0.94888 0.91612 0.93991 0.94135 0.92630 0.93948 0.96636 0.96861 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.31 36.00 0.37 -0.29 16 2 C 0.07 0.80 6.74 -84.22 -0.57 0.23 16 3 C -0.28 -2.97 11.13 29.12 0.32 -2.64 16 4 S 0.14 1.55 22.96 -107.50 -2.47 -0.92 16 5 C 0.08 1.10 6.32 -13.46 -0.09 1.02 16 6 C 0.15 1.95 3.10 -68.86 -0.21 1.74 16 7 H 0.11 1.47 7.80 -51.93 -0.41 1.06 16 8 C -0.18 -1.89 9.14 37.16 0.34 -1.55 16 9 N -0.68 -9.56 5.25 -107.95 -0.57 -10.12 16 10 C 0.07 1.19 4.45 -3.82 -0.02 1.18 16 11 C -0.06 -1.13 0.60 -154.51 -0.09 -1.22 16 12 C -0.13 -2.32 7.89 37.16 0.29 -2.03 16 13 C -0.12 -2.25 8.06 37.15 0.30 -1.95 16 14 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 15 C -0.51 -13.76 7.65 -34.44 -0.26 -14.02 16 16 H 0.06 1.54 5.68 -52.49 -0.30 1.24 16 17 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.73 13.29 55.43 0.74 -25.99 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 N -0.48 -6.75 10.53 -8.05 -0.08 -6.83 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.17 1.33 8.06 -52.49 -0.42 0.90 16 28 H 0.07 0.78 7.45 -51.93 -0.39 0.40 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.34 4.51 6.51 -39.29 -0.26 4.26 16 32 H 0.07 1.22 8.06 -51.93 -0.42 0.80 16 33 H 0.03 0.49 7.43 -51.93 -0.39 0.10 16 34 H 0.03 0.50 6.57 -51.92 -0.34 0.15 16 35 H 0.06 1.29 6.61 -51.93 -0.34 0.95 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 39 H 0.04 0.74 7.60 -51.93 -0.39 0.34 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 347.72 15.07 5.24 5.24 Total: -1.00 -30.09 347.72 -8.92 -39.01 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.93 Total: 0.43 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 0.18 Total: -17.32 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.09 Total: -42.95 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.47 Total: -0.92 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.09 -8.92 -39.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229696468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.218 kcal (2) G-P(sol) polarization free energy of solvation -30.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds