Wall clock time and date at job start Tue Mar 31 2020 06:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33640 * 122.75422 * 2 1 4 4 S 1.76194 * 107.92816 * 179.76157 * 3 2 1 5 5 C 1.70980 * 90.28213 * 0.27978 * 4 3 2 6 6 C 1.50701 * 124.91745 * 179.97438 * 5 4 3 7 7 H 1.08992 * 109.47284 * 164.70054 * 6 5 4 8 8 C 1.53002 * 109.46958 * 284.69972 * 6 5 4 9 9 N 1.46906 * 109.46922 * 44.69665 * 6 5 4 10 10 C 1.46903 * 110.99770 * 155.00349 * 9 6 5 11 11 C 1.52998 * 109.46854 * 180.02562 * 10 9 6 12 12 C 1.53003 * 109.46868 * 299.99274 * 11 10 9 13 13 C 1.52994 * 109.47548 * 59.99542 * 11 10 9 14 14 C 1.52999 * 109.46918 * 180.02562 * 11 10 9 15 15 C 1.50697 * 109.46990 * 179.97438 * 14 11 10 16 16 H 1.07998 * 120.00359 * 359.97438 * 15 14 11 17 17 C 1.37884 * 120.00060 * 179.97438 * 15 14 11 18 18 N 1.31511 * 119.99853 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00001 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47479 * 60.00090 * 19 17 15 21 21 H 1.48505 * 109.47192 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47296 * 299.99586 * 19 17 15 23 23 N 1.29026 * 110.16777 * 359.71635 * 5 4 3 24 24 H 1.09000 * 109.46912 * 270.02389 * 1 2 3 25 25 H 1.08999 * 109.46873 * 30.02330 * 1 2 3 26 26 H 1.09003 * 109.46964 * 150.02666 * 1 2 3 27 27 H 1.08002 * 126.03471 * 359.96984 * 3 2 1 28 28 H 1.09004 * 109.47006 * 179.97438 * 8 6 5 29 29 H 1.09002 * 109.47097 * 299.99808 * 8 6 5 30 30 H 1.09001 * 109.47142 * 59.99773 * 8 6 5 31 31 H 1.00899 * 110.99829 * 278.95499 * 9 6 5 32 32 H 1.09005 * 109.46479 * 299.99747 * 10 9 6 33 33 H 1.08996 * 109.47267 * 59.99984 * 10 9 6 34 34 H 1.09007 * 109.47060 * 60.00325 * 12 11 10 35 35 H 1.08997 * 109.46942 * 180.02562 * 12 11 10 36 36 H 1.08996 * 109.47498 * 300.00482 * 12 11 10 37 37 H 1.08998 * 109.47105 * 60.00261 * 13 11 10 38 38 H 1.08997 * 109.47481 * 180.02562 * 13 11 10 39 39 H 1.09000 * 109.47170 * 300.00341 * 13 11 10 40 40 H 1.08998 * 109.46986 * 299.99280 * 14 11 10 41 41 H 1.08996 * 109.47321 * 59.99595 * 14 11 10 42 42 H 0.97005 * 120.00245 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6731 0.0070 5 6 3.5039 -0.9819 0.0009 6 6 4.4834 -2.1272 0.0021 7 1 3.9652 -3.0483 0.2687 8 6 5.0991 -2.2733 -1.3909 9 7 5.5457 -1.8619 0.9816 10 6 6.1539 -3.1141 1.4506 11 6 7.2527 -2.7979 2.4673 12 6 8.3233 -1.9270 1.8068 13 6 6.6474 -2.0483 3.6558 14 6 7.8866 -4.1020 2.9553 15 6 8.9692 -3.7905 3.9563 16 1 9.1840 -2.7649 4.2178 17 6 9.6857 -4.8148 4.5382 18 7 9.4238 -6.0637 4.2201 19 14 11.0281 -4.4286 5.7783 20 1 10.4417 -3.7005 6.9321 21 1 11.6434 -5.6944 6.2522 22 1 12.0671 -3.5839 5.1362 23 7 2.2199 -1.1084 0.0004 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8903 -0.5134 27 1 1.8392 2.1308 -0.0005 28 1 5.8079 -3.1014 -1.3899 29 1 4.3109 -2.4701 -2.1177 30 1 5.6174 -1.3521 -1.6575 31 1 6.2438 -1.2420 0.5989 32 1 5.3912 -3.7344 1.9215 33 1 6.5848 -3.6483 0.6038 34 1 7.8720 -0.9978 1.4587 35 1 9.1063 -1.7020 2.5309 36 1 8.7545 -2.4609 0.9600 37 1 5.8847 -2.6688 4.1264 38 1 7.4302 -1.8226 4.3799 39 1 6.1961 -1.1192 3.3078 40 1 7.1241 -4.7228 3.4258 41 1 8.3179 -4.6356 2.1084 42 1 9.9281 -6.7844 4.6291 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229696468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:46 Heat of formation + Delta-G solvation = 3.115477 kcal Electronic energy + Delta-G solvation = -20028.605530 eV Core-core repulsion = 17133.826289 eV Total energy + Delta-G solvation = -2894.779241 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.84896 -39.39693 -36.87732 -34.47866 -32.74363 -30.68857 -28.79210 -28.47491 -27.88002 -26.95490 -25.90044 -24.22814 -22.29480 -20.65769 -19.56918 -18.49847 -18.30840 -16.92046 -16.61822 -16.09343 -16.01319 -15.66706 -15.23351 -14.63268 -14.56744 -14.49282 -14.04940 -13.90633 -13.85278 -13.48479 -13.31422 -13.15247 -12.88667 -12.75599 -12.68245 -12.53005 -12.35645 -12.20586 -12.15764 -12.07572 -11.92203 -11.37887 -10.86080 -10.78692 -10.56831 -10.48287 -10.30150 -9.57827 -9.41811 -8.12439 -6.19161 -0.18764 0.51896 0.91110 1.41991 1.43992 1.51169 1.83548 2.44817 2.80524 3.21671 3.49698 3.93698 4.00596 4.15185 4.23552 4.26238 4.33219 4.39853 4.42911 4.67221 4.71167 4.78866 4.82028 4.85522 4.88384 4.96069 5.00137 5.09581 5.11584 5.22827 5.23657 5.39331 5.53736 5.55948 5.60337 5.65077 5.88300 5.92185 5.95994 6.37587 6.41065 6.86278 6.95978 7.48047 8.99694 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.034036 B = 0.003301 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.450745 B = 8479.494010 C = 8570.670291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.043 3.957 3 C -0.272 4.272 4 S 0.159 5.841 5 C 0.059 3.941 6 C 0.156 3.844 7 H 0.091 0.909 8 C -0.170 4.170 9 N -0.677 5.677 10 C 0.086 3.914 11 C -0.054 4.054 12 C -0.123 4.123 13 C -0.108 4.108 14 C 0.041 3.959 15 C -0.514 4.514 16 H 0.066 0.934 17 C -0.004 4.004 18 N -0.938 5.938 19 Si 0.954 3.046 20 H -0.270 1.270 21 H -0.289 1.289 22 H -0.267 1.267 23 N -0.508 5.508 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.202 0.798 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.349 0.651 32 H 0.056 0.944 33 H 0.033 0.967 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.041 0.959 37 H 0.026 0.974 38 H 0.039 0.961 39 H 0.065 0.935 40 H -0.018 1.018 41 H -0.012 1.012 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.567 15.936 -12.033 24.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.089 4.089 3 C -0.411 4.411 4 S 0.415 5.585 5 C -0.220 4.220 6 C 0.042 3.958 7 H 0.109 0.891 8 C -0.230 4.230 9 N -0.310 5.310 10 C -0.043 4.043 11 C -0.055 4.055 12 C -0.180 4.180 13 C -0.165 4.165 14 C 0.003 3.997 15 C -0.552 4.552 16 H 0.084 0.916 17 C -0.200 4.200 18 N -0.579 5.579 19 Si 0.780 3.220 20 H -0.195 1.195 21 H -0.215 1.215 22 H -0.192 1.192 23 N -0.224 5.224 24 H 0.097 0.903 25 H 0.116 0.884 26 H 0.087 0.913 27 H 0.219 0.781 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.170 0.830 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.001 0.999 41 H 0.006 0.994 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.202 15.843 -11.451 23.589 hybrid contribution 0.338 -0.928 0.138 0.997 sum -12.864 14.915 -11.313 22.714 Atomic orbital electron populations 1.20416 0.85500 1.04053 1.03439 1.20761 0.99548 0.86489 1.02121 1.27202 0.95265 1.04831 1.13840 1.83780 1.07102 1.01323 1.66342 1.27016 0.93664 0.99119 1.02152 1.19936 0.90205 0.93289 0.92344 0.89074 1.22438 1.01661 1.03435 0.95431 1.60434 1.15273 1.15589 1.39698 1.21846 0.95743 0.90071 0.96636 1.20491 0.93972 0.96202 0.94799 1.21692 0.98112 0.98534 0.99653 1.21508 0.98822 0.99270 0.96887 1.18987 0.94013 0.92276 0.94376 1.21601 1.17461 0.92932 1.23250 0.91567 1.25902 1.00011 0.95004 0.99128 1.70099 1.42826 0.99672 1.45338 0.85658 0.79525 0.77288 0.79538 1.19478 1.21464 1.19159 1.66097 1.05227 1.33278 1.17782 0.90307 0.88442 0.91265 0.78077 0.90975 0.91151 0.90882 0.82951 0.92579 0.94907 0.91410 0.93413 0.93966 0.95460 0.94164 0.91576 0.99931 0.99395 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.31 71.23 0.73 -0.41 16 2 C 0.04 0.94 6.74 41.52 0.28 1.22 16 3 C -0.27 -5.00 11.13 66.78 0.74 -4.26 16 4 S 0.16 3.21 22.96 -56.49 -1.30 1.91 16 5 C 0.06 1.47 6.32 88.52 0.56 2.03 16 6 C 0.16 3.86 3.10 44.17 0.14 3.99 16 7 H 0.09 2.53 7.80 -2.39 -0.02 2.51 16 8 C -0.17 -3.39 9.14 71.98 0.66 -2.73 16 9 N -0.68 -18.11 5.25 -495.44 -2.60 -20.71 16 10 C 0.09 2.83 4.45 86.30 0.38 3.22 16 11 C -0.05 -2.10 0.60 -52.18 -0.03 -2.13 16 12 C -0.12 -4.21 7.89 71.98 0.57 -3.65 16 13 C -0.11 -4.09 8.06 71.98 0.58 -3.51 16 14 C 0.04 2.10 4.04 29.85 0.12 2.22 16 15 C -0.51 -28.24 7.65 25.60 0.20 -28.05 16 16 H 0.07 3.47 5.68 -2.91 -0.02 3.46 16 17 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 18 N -0.94 -57.31 13.29 21.45 0.28 -57.03 16 19 Si 0.95 44.34 29.54 68.60 2.03 46.36 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 N -0.51 -13.84 10.53 -179.40 -1.89 -15.73 16 24 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.10 0.95 8.12 -2.39 -0.02 0.93 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 28 H 0.07 1.46 7.45 -2.38 -0.02 1.44 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.07 1.27 8.13 -2.39 -0.02 1.25 16 31 H 0.35 8.35 6.51 -89.69 -0.58 7.77 16 32 H 0.06 2.00 8.06 -2.38 -0.02 1.99 16 33 H 0.03 1.06 7.43 -2.39 -0.02 1.04 16 34 H 0.07 1.85 6.57 -2.38 -0.02 1.83 16 35 H 0.05 1.81 6.61 -2.39 -0.02 1.79 16 36 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.04 1.63 6.62 -2.39 -0.02 1.61 16 39 H 0.07 2.18 7.60 -2.39 -0.02 2.17 16 40 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 41 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 42 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -65.85 347.72 2.33 -63.52 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.41 Total: 13.46 kcal Atomic # 6 Polarization: -37.18 SS G_CDS: 5.39 Total: -31.79 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -4.20 Total: -93.46 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -1.30 Total: 1.91 kcal Total: -65.85 2.33 -63.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229696468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.638 kcal (2) G-P(sol) polarization free energy of solvation -65.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds