Wall clock time and date at job start Tue Mar 31 2020 06:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33643 * 122.74824 * 2 1 4 4 S 1.76199 * 107.92569 * 179.97438 * 3 2 1 5 5 C 1.70974 * 90.28083 * 0.02562 * 4 3 2 6 6 C 1.50703 * 124.91459 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.46858 * 195.02341 * 6 5 4 8 8 C 1.52995 * 109.47198 * 75.02093 * 6 5 4 9 9 N 1.46904 * 109.47155 * 315.02132 * 6 5 4 10 10 C 1.46891 * 111.00320 * 204.99967 * 9 6 5 11 11 C 1.52998 * 109.47298 * 179.97438 * 10 9 6 12 12 C 1.53004 * 109.46988 * 300.00037 * 11 10 9 13 13 C 1.52998 * 109.47126 * 60.00023 * 11 10 9 14 14 C 1.52999 * 109.47155 * 180.02562 * 11 10 9 15 15 C 1.50699 * 109.47341 * 180.02562 * 14 11 10 16 16 H 1.08000 * 119.99767 * 359.97438 * 15 14 11 17 17 C 1.37877 * 120.00429 * 180.02562 * 15 14 11 18 18 N 1.31513 * 119.99866 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00150 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47652 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47276 * 119.99929 * 19 17 15 22 22 H 1.48505 * 109.47140 * 239.99686 * 19 17 15 23 23 N 1.29023 * 110.17232 * 0.02562 * 5 4 3 24 24 H 1.08997 * 109.47208 * 90.02421 * 1 2 3 25 25 H 1.09005 * 109.46733 * 210.02327 * 1 2 3 26 26 H 1.08999 * 109.47451 * 330.02592 * 1 2 3 27 27 H 1.08007 * 126.03527 * 0.24051 * 3 2 1 28 28 H 1.09008 * 109.47362 * 180.02562 * 8 6 5 29 29 H 1.09005 * 109.47252 * 299.99985 * 8 6 5 30 30 H 1.09001 * 109.47355 * 60.00006 * 8 6 5 31 31 H 1.00905 * 110.99685 * 81.04201 * 9 6 5 32 32 H 1.09004 * 109.47294 * 300.00138 * 10 9 6 33 33 H 1.09001 * 109.46939 * 60.00036 * 10 9 6 34 34 H 1.08998 * 109.47164 * 60.00143 * 12 11 10 35 35 H 1.09001 * 109.46626 * 180.02562 * 12 11 10 36 36 H 1.09001 * 109.47286 * 299.99979 * 12 11 10 37 37 H 1.09004 * 109.46935 * 60.00181 * 13 11 10 38 38 H 1.09001 * 109.46561 * 180.02562 * 13 11 10 39 39 H 1.08998 * 109.47227 * 299.99980 * 13 11 10 40 40 H 1.09004 * 109.47074 * 299.99922 * 14 11 10 41 41 H 1.09001 * 109.47303 * 59.99909 * 14 11 10 42 42 H 0.96999 * 120.00182 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 0.0007 5 6 3.5040 -0.9817 0.0002 6 6 4.4836 -2.1269 -0.0001 7 1 3.9655 -3.0481 -0.2668 8 6 5.0983 -2.2726 1.3934 9 7 5.5464 -1.8619 -0.9789 10 6 6.1551 -3.1141 -1.4472 11 6 7.2544 -2.7981 -2.4633 12 6 6.6497 -2.0489 -3.6525 13 6 8.3245 -1.9269 -1.8025 14 6 7.8879 -4.1024 -2.9515 15 6 8.9711 -3.7911 -3.9519 16 1 9.1860 -2.7656 -4.2136 17 6 9.6872 -4.8156 -4.5338 18 7 9.4253 -6.0644 -4.2156 19 14 11.0295 -4.4297 -5.7743 20 1 11.1260 -2.9593 -5.9580 21 1 12.3275 -4.9533 -5.2781 22 1 10.7017 -5.0699 -7.0735 23 7 2.2200 -1.1083 -0.0010 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 1.8390 2.1309 0.0037 28 1 5.8072 -3.1006 1.3931 29 1 5.6164 -1.3513 1.6600 30 1 4.3097 -2.4692 2.1197 31 1 6.2442 -1.2417 -0.5960 32 1 6.5854 -3.6481 -0.6000 33 1 5.3928 -3.7346 -1.9185 34 1 6.1981 -1.1198 -3.3050 35 1 7.4329 -1.8242 -4.3765 36 1 5.8873 -2.6696 -4.1233 37 1 8.7553 -2.4606 -0.9553 38 1 9.1074 -1.7014 -2.5265 39 1 7.8729 -0.9977 -1.4550 40 1 8.3186 -4.6365 -2.1045 41 1 7.1253 -4.7227 -3.4225 42 1 9.9288 -6.7852 -4.6252 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229696476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:52 Heat of formation + Delta-G solvation = 21.136061 kcal Electronic energy + Delta-G solvation = -20027.843853 eV Core-core repulsion = 17133.846042 eV Total energy + Delta-G solvation = -2893.997810 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.94499 -38.02076 -35.52706 -32.54634 -31.70380 -29.53214 -27.72382 -26.89049 -26.33935 -25.75380 -24.61093 -22.47193 -21.28289 -19.72620 -18.12178 -17.48481 -16.26807 -15.80080 -15.20138 -14.98015 -14.69641 -14.34351 -14.04798 -13.39754 -13.29078 -13.15895 -12.95370 -12.75889 -12.67405 -12.28071 -12.01708 -11.92117 -11.75139 -11.49735 -11.27143 -11.00680 -10.89017 -10.75288 -10.50750 -10.29630 -10.13305 -9.70974 -9.65435 -9.41966 -9.05153 -8.85230 -8.70162 -8.31870 -8.25660 -5.96238 -3.96230 0.69418 1.37747 1.78626 2.72792 3.32599 3.40631 3.43955 3.77972 4.46702 4.55857 4.80058 4.96757 5.01290 5.11105 5.18960 5.39777 5.40481 5.50372 5.55225 5.65564 5.67920 5.73622 5.79483 5.91807 5.99420 6.13712 6.23285 6.30124 6.48330 6.64855 6.76407 6.82620 7.11164 7.19825 7.24928 7.32226 7.52969 7.70354 7.74005 7.84870 8.04082 8.48270 9.09339 9.66699 11.15471 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.034030 B = 0.003301 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.598216 B = 8481.082246 C = 8571.247227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.068 3.932 3 C -0.280 4.280 4 S 0.137 5.863 5 C 0.084 3.916 6 C 0.153 3.847 7 H 0.107 0.893 8 C -0.177 4.177 9 N -0.680 5.680 10 C 0.072 3.928 11 C -0.058 4.058 12 C -0.117 4.117 13 C -0.129 4.129 14 C 0.034 3.966 15 C -0.506 4.506 16 H 0.060 0.940 17 C 0.054 3.946 18 N -0.897 5.897 19 Si 0.887 3.113 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.285 1.285 23 N -0.480 5.480 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.172 0.828 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.342 0.658 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.042 0.958 35 H 0.055 0.945 36 H 0.039 0.961 37 H 0.041 0.959 38 H 0.065 0.935 39 H 0.032 0.968 40 H 0.013 0.987 41 H 0.015 0.985 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.385 13.279 11.513 22.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.065 4.065 3 C -0.420 4.420 4 S 0.393 5.607 5 C -0.195 4.195 6 C 0.039 3.961 7 H 0.125 0.875 8 C -0.237 4.237 9 N -0.312 5.312 10 C -0.056 4.056 11 C -0.058 4.058 12 C -0.174 4.174 13 C -0.187 4.187 14 C -0.004 4.004 15 C -0.544 4.544 16 H 0.078 0.922 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.715 3.285 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.212 1.212 23 N -0.195 5.195 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.190 0.810 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.162 0.838 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.084 0.916 39 H 0.051 0.949 40 H 0.031 0.969 41 H 0.034 0.966 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.015 13.176 10.930 21.505 hybrid contribution 0.351 -0.159 -0.002 0.386 sum -12.664 13.017 10.927 21.195 Atomic orbital electron populations 1.20332 0.87402 1.03045 1.02878 1.20261 0.98104 0.86626 1.01517 1.26791 0.95800 1.03747 1.15636 1.83946 1.06594 1.03122 1.67045 1.27068 0.93680 0.98009 1.00785 1.20013 0.90731 0.93657 0.91692 0.87465 1.22512 1.01631 1.02863 0.96707 1.60563 1.15086 1.16952 1.38644 1.22176 0.97024 0.89026 0.97373 1.20641 0.92745 0.98707 0.93755 1.21609 0.99716 0.98605 0.97481 1.21778 0.99154 0.97412 1.00338 1.19124 0.95183 0.90166 0.95882 1.21269 1.17244 0.92702 1.23220 0.92226 1.25014 0.97442 0.95163 0.96994 1.69973 1.41368 0.98624 1.43757 0.86614 0.82023 0.78404 0.81428 1.19772 1.21203 1.21171 1.66084 1.04557 1.31627 1.17226 0.90719 0.90707 0.90971 0.81031 0.90835 0.92149 0.91637 0.83827 0.95180 0.91162 0.93944 0.92618 0.94140 0.93986 0.91606 0.94887 0.96850 0.96625 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.31 36.00 0.37 -0.29 16 2 C 0.07 0.80 6.74 -84.22 -0.57 0.23 16 3 C -0.28 -2.97 11.13 29.12 0.32 -2.64 16 4 S 0.14 1.55 22.96 -107.50 -2.47 -0.92 16 5 C 0.08 1.10 6.32 -13.46 -0.09 1.02 16 6 C 0.15 1.95 3.10 -68.86 -0.21 1.74 16 7 H 0.11 1.47 7.80 -51.93 -0.41 1.06 16 8 C -0.18 -1.89 9.14 37.15 0.34 -1.55 16 9 N -0.68 -9.55 5.25 -107.96 -0.57 -10.12 16 10 C 0.07 1.19 4.44 -3.83 -0.02 1.18 16 11 C -0.06 -1.13 0.60 -154.51 -0.09 -1.22 16 12 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 13 C -0.13 -2.32 7.89 37.16 0.29 -2.02 16 14 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 15 C -0.51 -13.70 7.65 -34.44 -0.26 -13.96 16 16 H 0.06 1.58 5.68 -52.49 -0.30 1.28 16 17 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 18 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 N -0.48 -6.75 10.53 -8.06 -0.08 -6.83 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 27 H 0.17 1.33 8.06 -52.48 -0.42 0.90 16 28 H 0.07 0.78 7.45 -51.92 -0.39 0.40 16 29 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.34 4.51 6.51 -39.29 -0.26 4.25 16 32 H 0.03 0.49 7.44 -51.93 -0.39 0.10 16 33 H 0.07 1.22 8.06 -51.93 -0.42 0.80 16 34 H 0.04 0.74 7.60 -51.93 -0.39 0.34 16 35 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16 36 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 39 H 0.03 0.50 6.57 -51.93 -0.34 0.15 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 347.73 15.07 5.24 5.24 Total: -1.00 -30.13 347.73 -8.92 -39.05 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.93 Total: 0.35 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 0.18 Total: -17.30 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.08 Total: -42.92 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.47 Total: -0.92 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.13 -8.92 -39.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229696476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.184 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds