Wall clock time and date at job start Tue Mar 31 2020 06:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33643 * 122.74824 * 2 1 4 4 S 1.76199 * 107.92569 * 179.97438 * 3 2 1 5 5 C 1.70974 * 90.28083 * 0.02562 * 4 3 2 6 6 C 1.50703 * 124.91459 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.46858 * 195.02341 * 6 5 4 8 8 C 1.52995 * 109.47198 * 75.02093 * 6 5 4 9 9 N 1.46904 * 109.47155 * 315.02132 * 6 5 4 10 10 C 1.46891 * 111.00320 * 204.99967 * 9 6 5 11 11 C 1.52998 * 109.47298 * 179.97438 * 10 9 6 12 12 C 1.53004 * 109.46988 * 300.00037 * 11 10 9 13 13 C 1.52998 * 109.47126 * 60.00023 * 11 10 9 14 14 C 1.52999 * 109.47155 * 180.02562 * 11 10 9 15 15 C 1.50699 * 109.47341 * 180.02562 * 14 11 10 16 16 H 1.08000 * 119.99767 * 359.97438 * 15 14 11 17 17 C 1.37877 * 120.00429 * 180.02562 * 15 14 11 18 18 N 1.31513 * 119.99866 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00150 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47652 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47276 * 119.99929 * 19 17 15 22 22 H 1.48505 * 109.47140 * 239.99686 * 19 17 15 23 23 N 1.29023 * 110.17232 * 0.02562 * 5 4 3 24 24 H 1.08997 * 109.47208 * 90.02421 * 1 2 3 25 25 H 1.09005 * 109.46733 * 210.02327 * 1 2 3 26 26 H 1.08999 * 109.47451 * 330.02592 * 1 2 3 27 27 H 1.08007 * 126.03527 * 0.24051 * 3 2 1 28 28 H 1.09008 * 109.47362 * 180.02562 * 8 6 5 29 29 H 1.09005 * 109.47252 * 299.99985 * 8 6 5 30 30 H 1.09001 * 109.47355 * 60.00006 * 8 6 5 31 31 H 1.00905 * 110.99685 * 81.04201 * 9 6 5 32 32 H 1.09004 * 109.47294 * 300.00138 * 10 9 6 33 33 H 1.09001 * 109.46939 * 60.00036 * 10 9 6 34 34 H 1.08998 * 109.47164 * 60.00143 * 12 11 10 35 35 H 1.09001 * 109.46626 * 180.02562 * 12 11 10 36 36 H 1.09001 * 109.47286 * 299.99979 * 12 11 10 37 37 H 1.09004 * 109.46935 * 60.00181 * 13 11 10 38 38 H 1.09001 * 109.46561 * 180.02562 * 13 11 10 39 39 H 1.08998 * 109.47227 * 299.99980 * 13 11 10 40 40 H 1.09004 * 109.47074 * 299.99922 * 14 11 10 41 41 H 1.09001 * 109.47303 * 59.99909 * 14 11 10 42 42 H 0.96999 * 120.00182 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 0.0007 5 6 3.5040 -0.9817 0.0002 6 6 4.4836 -2.1269 -0.0001 7 1 3.9655 -3.0481 -0.2668 8 6 5.0983 -2.2726 1.3934 9 7 5.5464 -1.8619 -0.9789 10 6 6.1551 -3.1141 -1.4472 11 6 7.2544 -2.7981 -2.4633 12 6 6.6497 -2.0489 -3.6525 13 6 8.3245 -1.9269 -1.8025 14 6 7.8879 -4.1024 -2.9515 15 6 8.9711 -3.7911 -3.9519 16 1 9.1860 -2.7656 -4.2136 17 6 9.6872 -4.8156 -4.5338 18 7 9.4253 -6.0644 -4.2156 19 14 11.0295 -4.4297 -5.7743 20 1 11.1260 -2.9593 -5.9580 21 1 12.3275 -4.9533 -5.2781 22 1 10.7017 -5.0699 -7.0735 23 7 2.2200 -1.1083 -0.0010 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3633 -0.8898 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 1.8390 2.1309 0.0037 28 1 5.8072 -3.1006 1.3931 29 1 5.6164 -1.3513 1.6600 30 1 4.3097 -2.4692 2.1197 31 1 6.2442 -1.2417 -0.5960 32 1 6.5854 -3.6481 -0.6000 33 1 5.3928 -3.7346 -1.9185 34 1 6.1981 -1.1198 -3.3050 35 1 7.4329 -1.8242 -4.3765 36 1 5.8873 -2.6696 -4.1233 37 1 8.7553 -2.4606 -0.9553 38 1 9.1074 -1.7014 -2.5265 39 1 7.8729 -0.9977 -1.4550 40 1 8.3186 -4.6365 -2.1045 41 1 7.1253 -4.7227 -3.4225 42 1 9.9288 -6.7852 -4.6252 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229696476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:51 Heat of formation + Delta-G solvation = 3.018146 kcal Electronic energy + Delta-G solvation = -20028.629504 eV Core-core repulsion = 17133.846042 eV Total energy + Delta-G solvation = -2894.783462 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.84942 -39.39642 -36.87738 -34.47968 -32.74376 -30.68904 -28.79317 -28.47413 -27.87863 -26.95420 -25.90119 -24.23034 -22.29473 -20.65817 -19.56907 -18.49807 -18.31439 -16.92073 -16.61642 -16.09157 -16.01014 -15.66583 -15.23549 -14.63231 -14.57507 -14.48886 -14.05467 -13.90704 -13.85607 -13.48674 -13.31578 -13.15175 -12.88109 -12.80562 -12.64690 -12.52718 -12.36239 -12.21214 -12.16335 -12.07645 -11.87749 -11.38169 -10.86232 -10.77376 -10.56701 -10.49650 -10.30141 -9.57851 -9.41620 -8.12806 -6.19284 -0.18738 0.51908 0.91100 1.40647 1.42150 1.53867 1.83569 2.44561 2.80572 3.21541 3.49733 3.93712 4.00645 4.15243 4.23566 4.26321 4.33230 4.39923 4.42905 4.67257 4.71192 4.78902 4.82084 4.85544 4.88398 4.96188 5.00148 5.09706 5.11591 5.22893 5.23778 5.39350 5.53983 5.56054 5.60377 5.65238 5.88315 5.92325 5.96127 6.37635 6.41155 6.86315 6.96256 7.48022 8.99726 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.034030 B = 0.003301 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.598216 B = 8481.082246 C = 8571.247227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.043 3.957 3 C -0.272 4.272 4 S 0.159 5.841 5 C 0.059 3.941 6 C 0.156 3.844 7 H 0.091 0.909 8 C -0.170 4.170 9 N -0.677 5.677 10 C 0.086 3.914 11 C -0.054 4.054 12 C -0.108 4.108 13 C -0.123 4.123 14 C 0.040 3.960 15 C -0.511 4.511 16 H 0.066 0.934 17 C -0.005 4.005 18 N -0.938 5.938 19 Si 0.954 3.046 20 H -0.260 1.260 21 H -0.282 1.282 22 H -0.284 1.284 23 N -0.508 5.508 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.202 0.798 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.349 0.651 32 H 0.033 0.967 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.039 0.961 36 H 0.026 0.974 37 H 0.042 0.958 38 H 0.047 0.953 39 H 0.067 0.933 40 H -0.012 1.012 41 H -0.017 1.017 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.597 15.960 12.060 24.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.089 4.089 3 C -0.411 4.411 4 S 0.414 5.586 5 C -0.219 4.219 6 C 0.042 3.958 7 H 0.109 0.891 8 C -0.230 4.230 9 N -0.310 5.310 10 C -0.043 4.043 11 C -0.055 4.055 12 C -0.165 4.165 13 C -0.180 4.180 14 C 0.003 3.997 15 C -0.550 4.550 16 H 0.084 0.916 17 C -0.201 4.201 18 N -0.579 5.579 19 Si 0.780 3.220 20 H -0.184 1.184 21 H -0.208 1.208 22 H -0.211 1.211 23 N -0.224 5.224 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.116 0.884 27 H 0.219 0.781 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.171 0.829 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.006 0.994 41 H 0.001 0.999 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.234 15.877 11.486 23.646 hybrid contribution 0.341 -0.954 -0.147 1.024 sum -12.893 14.923 11.339 22.748 Atomic orbital electron populations 1.20416 0.85501 1.04054 1.03439 1.20760 0.99547 0.86489 1.02121 1.27204 0.95257 1.04831 1.13842 1.83778 1.07108 1.01330 1.66347 1.27014 0.93664 0.99119 1.02148 1.19936 0.90198 0.93291 0.92347 0.89074 1.22439 1.01667 1.03439 0.95425 1.60428 1.15244 1.15578 1.39744 1.21844 0.95737 0.90070 0.96641 1.20492 0.93975 0.96200 0.94800 1.21513 0.98824 0.99275 0.96885 1.21690 0.98121 0.98528 0.99650 1.19000 0.94041 0.92282 0.94404 1.21654 1.17288 0.92931 1.23095 0.91561 1.25900 1.00027 0.95029 0.99156 1.70112 1.42841 0.99677 1.45319 0.85549 0.78961 0.78773 0.78694 1.18424 1.20798 1.21062 1.66095 1.05226 1.33283 1.17782 0.90312 0.91262 0.88442 0.78074 0.90969 0.90883 0.91151 0.82949 0.94908 0.92580 0.91584 0.94172 0.95445 0.93935 0.93424 0.91422 0.99374 0.99905 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.31 71.23 0.73 -0.40 16 2 C 0.04 0.94 6.74 41.52 0.28 1.22 16 3 C -0.27 -5.00 11.13 66.78 0.74 -4.26 16 4 S 0.16 3.20 22.96 -56.49 -1.30 1.90 16 5 C 0.06 1.47 6.32 88.52 0.56 2.03 16 6 C 0.16 3.85 3.10 44.17 0.14 3.99 16 7 H 0.09 2.53 7.80 -2.39 -0.02 2.51 16 8 C -0.17 -3.38 9.14 71.98 0.66 -2.72 16 9 N -0.68 -18.09 5.25 -495.47 -2.60 -20.70 16 10 C 0.09 2.83 4.44 86.30 0.38 3.21 16 11 C -0.05 -2.10 0.60 -52.18 -0.03 -2.13 16 12 C -0.11 -4.09 8.06 71.98 0.58 -3.51 16 13 C -0.12 -4.21 7.89 71.98 0.57 -3.64 16 14 C 0.04 2.06 4.04 29.85 0.12 2.18 16 15 C -0.51 -28.06 7.65 25.60 0.20 -27.86 16 16 H 0.07 3.49 5.68 -2.91 -0.02 3.47 16 17 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 18 N -0.94 -57.24 13.29 21.45 0.28 -56.96 16 19 Si 0.95 44.39 29.54 68.60 2.03 46.41 16 20 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 23 N -0.51 -13.83 10.53 -179.40 -1.89 -15.72 16 24 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.07 1.11 8.14 -2.38 -0.02 1.10 16 26 H 0.10 0.94 8.12 -2.39 -0.02 0.93 16 27 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 28 H 0.07 1.45 7.45 -2.38 -0.02 1.44 16 29 H 0.07 1.27 8.13 -2.38 -0.02 1.25 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.35 8.35 6.51 -89.69 -0.58 7.76 16 32 H 0.03 1.06 7.44 -2.39 -0.02 1.04 16 33 H 0.06 2.00 8.06 -2.39 -0.02 1.98 16 34 H 0.07 2.18 7.60 -2.39 -0.02 2.16 16 35 H 0.04 1.62 6.62 -2.39 -0.02 1.61 16 36 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.80 6.62 -2.39 -0.02 1.79 16 39 H 0.07 1.85 6.57 -2.39 -0.02 1.83 16 40 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 41 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 42 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -65.88 347.73 2.33 -63.55 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.41 Total: 13.20 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: 5.39 Total: -31.69 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -4.21 Total: -93.38 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.30 Total: 1.90 kcal Total: -65.88 2.33 -63.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229696476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.571 kcal (2) G-P(sol) polarization free energy of solvation -65.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds