Wall clock time and date at job start Tue Mar 31 2020 06:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29021 * 124.91978 * 2 1 4 4 C 1.31780 * 117.12718 * 179.97438 * 3 2 1 5 5 C 1.50706 * 122.75026 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46953 * 305.02680 * 5 4 3 7 7 N 1.46906 * 109.46897 * 180.02562 * 6 5 4 8 8 C 1.46898 * 110.99888 * 179.97438 * 7 6 5 9 9 C 1.53007 * 109.46764 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47080 * 300.00036 * 9 8 7 11 11 C 1.52997 * 109.47188 * 60.00071 * 9 8 7 12 12 C 1.52996 * 109.47066 * 179.97438 * 9 8 7 13 13 C 1.50694 * 109.47331 * 179.97438 * 12 9 8 14 14 H 1.07998 * 120.00090 * 0.02562 * 13 12 9 15 15 C 1.37877 * 120.00034 * 179.97438 * 13 12 9 16 16 N 1.31510 * 120.00193 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00098 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.47021 * 90.00131 * 17 15 13 19 19 H 1.48493 * 109.47462 * 210.00339 * 17 15 13 20 20 H 1.48501 * 109.47005 * 330.00707 * 17 15 13 21 21 C 1.33632 * 114.49933 * 0.23188 * 4 3 2 22 22 S 1.70979 * 124.91352 * 179.97438 * 2 1 3 23 23 H 1.09000 * 109.47136 * 90.00040 * 1 2 3 24 24 H 1.08998 * 109.47409 * 210.00346 * 1 2 3 25 25 H 1.09002 * 109.47171 * 330.00355 * 1 2 3 26 26 H 1.09000 * 109.46974 * 185.02428 * 5 4 3 27 27 H 1.09001 * 109.46547 * 65.02519 * 5 4 3 28 28 H 1.09000 * 109.47486 * 60.00062 * 6 5 4 29 29 H 1.09001 * 109.47362 * 299.99339 * 6 5 4 30 30 H 1.00902 * 110.99923 * 303.95801 * 7 6 5 31 31 H 1.08995 * 109.47296 * 299.99911 * 8 7 6 32 32 H 1.08997 * 109.47334 * 60.00212 * 8 7 6 33 33 H 1.08993 * 109.47237 * 60.00186 * 10 9 8 34 34 H 1.09000 * 109.46718 * 180.02562 * 10 9 8 35 35 H 1.09000 * 109.47014 * 300.00314 * 10 9 8 36 36 H 1.09004 * 109.47373 * 59.99887 * 11 9 8 37 37 H 1.09000 * 109.47373 * 179.97438 * 11 9 8 38 38 H 1.09006 * 109.47006 * 300.00098 * 11 9 8 39 39 H 1.09004 * 109.47365 * 300.00747 * 12 9 8 40 40 H 1.09005 * 109.47287 * 59.99608 * 12 9 8 41 41 H 0.97005 * 120.00597 * 179.97438 * 16 15 13 42 42 H 1.08006 * 126.04349 * 179.77015 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8792 0.0005 5 6 4.5308 2.0245 0.0000 6 6 4.2335 2.9494 -1.1820 7 7 5.1888 4.0654 -1.1828 8 6 4.9335 4.9760 -2.3069 9 6 5.9456 6.1230 -2.2739 10 6 5.8066 6.8880 -0.9562 11 6 7.3623 5.5567 -2.3878 12 6 5.6802 7.0711 -3.4450 13 6 6.6765 8.2012 -3.4122 14 1 7.4245 8.2392 -2.6341 15 6 6.6338 9.1861 -4.3761 16 7 5.7233 9.1396 -5.3239 17 14 7.8693 10.5866 -4.3359 18 1 9.0690 10.2113 -5.1266 19 1 7.2543 11.8063 -4.9183 20 1 8.2671 10.8556 -2.9306 21 6 3.9354 -0.4007 -0.0039 22 16 2.4856 -1.4021 0.0006 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 5.5449 1.6351 -0.0894 27 1 4.4369 2.5832 0.9312 28 1 3.2193 3.3388 -1.0925 29 1 4.3274 2.3906 -2.1131 30 1 5.1672 4.5604 -0.3038 31 1 5.0321 4.4309 -3.2456 32 1 3.9244 5.3798 -2.2255 33 1 5.9960 6.2124 -0.1221 34 1 6.5273 7.7054 -0.9329 35 1 4.7973 7.2914 -0.8750 36 1 7.4613 5.0117 -3.3266 37 1 8.0832 6.3739 -2.3648 38 1 7.5516 4.8809 -1.5537 39 1 5.7794 6.5258 -4.3836 40 1 4.6708 7.4746 -3.3643 41 1 5.6930 9.8327 -6.0019 42 1 4.9545 -0.7583 -0.0078 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230640508.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:46 Heat of formation + Delta-G solvation = 17.324935 kcal Electronic energy + Delta-G solvation = -19435.272410 eV Core-core repulsion = 16541.109337 eV Total energy + Delta-G solvation = -2894.163073 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.16733 -37.65635 -35.03104 -33.02354 -32.08536 -29.81760 -28.26848 -26.86496 -26.28228 -25.22067 -23.52870 -22.32523 -21.70574 -19.91432 -18.02222 -17.50108 -16.19654 -15.79930 -15.40326 -15.28733 -14.72693 -14.29205 -14.12817 -13.74116 -13.59905 -13.22789 -12.97693 -12.58345 -12.51380 -12.41908 -12.15319 -11.96518 -11.58503 -11.35704 -11.19262 -10.91772 -10.77669 -10.71967 -10.44817 -10.21264 -10.08519 -9.85319 -9.64894 -9.62889 -9.00658 -8.89591 -8.76824 -8.28465 -8.02751 -5.92925 -3.92926 0.47176 1.11298 1.48252 2.56579 3.35615 3.41992 3.44831 3.80771 4.42092 4.53413 4.71720 4.99769 5.02513 5.10035 5.14666 5.17787 5.42796 5.49338 5.49689 5.60792 5.74617 5.82350 5.92969 6.01186 6.08214 6.15554 6.33017 6.39431 6.56648 6.70918 6.84001 6.87437 7.25844 7.27346 7.30580 7.45160 7.54348 7.72597 7.76377 7.90415 8.07689 8.52245 9.12575 9.69649 11.18813 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.041491 B = 0.002558 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.677417 B =10943.078011 C =11230.474202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.051 3.949 3 N -0.467 5.467 4 C 0.079 3.921 5 C -0.043 4.043 6 C 0.067 3.933 7 N -0.688 5.688 8 C 0.071 3.929 9 C -0.058 4.058 10 C -0.129 4.129 11 C -0.116 4.116 12 C 0.033 3.967 13 C -0.506 4.506 14 H 0.059 0.941 15 C 0.054 3.946 16 N -0.898 5.898 17 Si 0.888 3.112 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.259 4.259 22 S 0.102 5.898 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.035 0.965 29 H 0.066 0.934 30 H 0.338 0.662 31 H 0.065 0.935 32 H 0.023 0.977 33 H 0.033 0.967 34 H 0.064 0.936 35 H 0.040 0.960 36 H 0.039 0.961 37 H 0.054 0.946 38 H 0.042 0.958 39 H 0.015 0.985 40 H 0.012 0.988 41 H 0.258 0.742 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.736 -21.427 12.405 25.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.228 4.228 3 N -0.183 5.183 4 C -0.053 4.053 5 C -0.083 4.083 6 C -0.063 4.063 7 N -0.320 5.320 8 C -0.058 4.058 9 C -0.059 4.059 10 C -0.186 4.186 11 C -0.173 4.173 12 C -0.004 4.004 13 C -0.544 4.544 14 H 0.077 0.923 15 C -0.147 4.147 16 N -0.538 5.538 17 Si 0.716 3.284 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.397 4.397 22 S 0.356 5.644 23 H 0.105 0.895 24 H 0.099 0.901 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.097 0.903 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.156 0.844 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.033 0.967 40 H 0.031 0.969 41 H 0.068 0.932 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -7.785 -22.258 11.919 26.421 hybrid contribution 0.427 1.906 0.097 1.956 sum -7.358 -20.352 12.015 24.753 Atomic orbital electron populations 1.20456 0.85173 1.04188 1.04028 1.27076 1.01807 0.90853 1.03062 1.66096 1.04670 1.31482 1.16030 1.20322 0.90040 0.94362 1.00554 1.20197 0.95826 0.92491 0.99779 1.21788 0.94346 0.92722 0.97470 1.60575 1.51834 1.12455 1.07131 1.22089 0.97299 0.93240 0.93123 1.20627 0.94223 0.93573 0.97450 1.21768 1.01312 0.99714 0.95831 1.21598 0.96406 0.99529 0.99768 1.19127 0.96753 0.93000 0.91560 1.21242 1.14822 1.07391 1.10944 0.92286 1.25021 0.95742 0.98154 0.95735 1.69968 1.34404 1.34474 1.14963 0.86664 0.81547 0.82072 0.78134 1.20792 1.21412 1.19948 1.26830 1.03038 0.95629 1.14231 1.83918 0.98336 1.13134 1.69029 0.89473 0.90146 0.89190 0.89340 0.90300 0.94646 0.91536 0.84363 0.91689 0.95861 0.94777 0.91734 0.94117 0.94232 0.92727 0.93880 0.96709 0.96919 0.93190 0.80513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.46 36.01 0.38 -0.12 16 2 C 0.05 0.49 7.39 -13.46 -0.10 0.40 16 3 N -0.47 -5.78 10.34 -8.06 -0.08 -5.87 16 4 C 0.08 0.91 6.08 -84.23 -0.51 0.40 16 5 C -0.04 -0.48 5.97 -27.88 -0.17 -0.65 16 6 C 0.07 0.91 5.59 -3.82 -0.02 0.88 16 7 N -0.69 -10.38 5.71 -113.78 -0.65 -11.03 16 8 C 0.07 1.29 4.65 -3.82 -0.02 1.27 16 9 C -0.06 -1.19 0.60 -154.51 -0.09 -1.29 16 10 C -0.13 -2.45 7.89 37.16 0.29 -2.16 16 11 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 12 C 0.03 0.85 4.04 -27.89 -0.11 0.74 16 13 C -0.51 -14.03 7.65 -34.44 -0.26 -14.29 16 14 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 15 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 17 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 C -0.26 -2.48 11.07 29.12 0.32 -2.16 16 22 S 0.10 0.84 23.18 -107.50 -2.49 -1.65 16 23 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.09 0.91 8.03 -51.93 -0.42 0.49 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.04 0.52 8.08 -51.93 -0.42 0.10 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.34 4.85 6.77 -39.29 -0.27 4.58 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.03 0.55 6.57 -51.93 -0.34 0.20 16 34 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 38 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 39 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.18 1.31 8.06 -52.48 -0.42 0.88 16 LS Contribution 350.18 15.07 5.28 5.28 Total: -1.00 -31.09 350.18 -9.36 -40.45 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -7.03 Total: 0.01 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -0.09 Total: -17.51 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.00 Total: -43.40 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.49 Total: -1.65 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.09 -9.36 -40.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230640508.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.772 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds