Wall clock time and date at job start Tue Mar 31 2020 06:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47208 * 2 1 4 4 C 1.53000 * 109.46985 * 240.00509 * 2 1 3 5 5 C 1.50700 * 109.47262 * 120.00512 * 2 1 3 6 6 N 1.29027 * 124.91685 * 60.02033 * 5 2 1 7 7 C 1.31779 * 117.12535 * 180.02562 * 6 5 2 8 8 C 1.33640 * 114.50004 * 0.02562 * 7 6 5 9 9 C 1.50697 * 126.03640 * 179.97438 * 8 7 6 10 10 N 1.46905 * 109.47066 * 90.02577 * 9 8 7 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.46916 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.46700 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.46820 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00070 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00019 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99993 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 120.00130 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47108 * 89.99504 * 18 16 14 20 20 H 1.48498 * 109.47097 * 209.99712 * 18 16 14 21 21 H 1.48499 * 109.46508 * 329.99366 * 18 16 14 22 22 S 1.70972 * 124.91490 * 240.34090 * 5 2 1 23 23 H 1.08994 * 109.47171 * 299.99581 * 1 2 3 24 24 H 1.09008 * 109.47062 * 59.99720 * 1 2 3 25 25 H 1.08998 * 109.47515 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47008 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47334 * 300.00263 * 3 2 1 28 28 H 1.09006 * 109.46969 * 60.00435 * 3 2 1 29 29 H 1.09001 * 109.47384 * 299.99677 * 4 2 1 30 30 H 1.09000 * 109.47362 * 60.00334 * 4 2 1 31 31 H 1.09002 * 109.47378 * 180.02562 * 4 2 1 32 32 H 1.07999 * 122.74763 * 180.02562 * 7 6 5 33 33 H 1.09001 * 109.47558 * 330.02740 * 9 8 7 34 34 H 1.08998 * 109.47216 * 210.02402 * 9 8 7 35 35 H 1.00901 * 110.99869 * 56.04737 * 10 9 8 36 36 H 1.09004 * 109.47031 * 299.99620 * 11 10 9 37 37 H 1.08995 * 109.47111 * 59.99900 * 11 10 9 38 38 H 1.08995 * 109.46615 * 299.99641 * 12 11 10 39 39 H 1.08996 * 109.46939 * 60.00272 * 12 11 10 40 40 H 1.08993 * 109.47740 * 299.99810 * 13 12 11 41 41 H 1.09005 * 109.47573 * 59.99976 * 13 12 11 42 42 H 0.96999 * 120.00009 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0324 -0.7105 1.2304 6 7 1.7801 -1.9405 1.5277 7 6 2.2991 -2.4070 2.6455 8 6 3.0294 -1.5211 3.3295 9 6 3.7373 -1.7755 4.6353 10 7 5.0994 -2.2567 4.3682 11 6 5.8210 -2.5165 5.6211 12 6 7.2324 -3.0143 5.3029 13 6 7.9842 -3.2842 6.6078 14 6 9.3741 -3.7751 6.2944 15 1 9.6897 -3.8834 5.2673 16 6 10.2431 -4.0851 7.3190 17 7 11.4559 -4.5140 7.0455 18 14 9.6974 -3.8972 9.0956 19 1 9.0862 -5.1674 9.5627 20 1 10.8730 -3.5727 9.9429 21 1 8.6992 -2.8021 9.1936 22 16 3.0126 -0.0012 2.4383 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1299 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6767 -1.7488 -1.2494 30 1 1.6767 -0.2072 -2.1393 31 1 3.1300 -0.7216 -1.2491 32 1 2.1467 -3.4221 2.9813 33 1 3.1912 -2.5280 5.2042 34 1 3.7850 -0.8500 5.2091 35 1 5.6056 -1.6053 3.7873 36 1 5.8831 -1.5963 6.2021 37 1 5.2891 -3.2742 6.1964 38 1 7.1706 -3.9343 4.7218 39 1 7.7640 -2.2562 4.7279 40 1 8.0459 -2.3640 7.1887 41 1 7.4527 -4.0421 7.1834 42 1 12.0671 -4.7325 7.7663 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236767636.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:32 Heat of formation + Delta-G solvation = 14.900152 kcal Electronic energy + Delta-G solvation = -19005.664216 eV Core-core repulsion = 16111.395996 eV Total energy + Delta-G solvation = -2894.268220 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.07719 -37.34451 -36.40240 -33.73494 -31.92696 -30.09375 -27.83037 -27.61438 -27.17826 -25.60822 -23.56853 -22.05090 -21.29164 -20.16604 -18.84419 -17.90743 -16.75222 -16.12467 -15.33384 -15.17026 -14.70510 -14.65138 -14.45899 -14.12231 -13.79056 -13.66495 -13.53864 -12.69469 -12.65251 -12.52583 -12.42498 -12.05591 -11.95550 -11.71710 -11.66706 -11.39162 -11.36075 -11.23367 -10.96685 -10.79971 -9.98584 -9.75909 -9.74034 -9.63984 -9.37744 -9.17457 -8.92250 -8.52980 -8.34689 -6.03129 -4.00999 0.55687 1.17065 1.61563 2.71862 3.30923 3.38043 3.41326 3.76657 4.35308 4.39911 4.45753 4.51433 4.65011 4.79123 4.99687 5.05778 5.17185 5.24437 5.30573 5.37390 5.44452 5.47780 5.52047 5.57284 5.61651 5.63013 5.70398 5.77141 5.88608 5.93332 6.10786 6.12483 6.50065 6.53534 6.89902 7.09506 7.32883 7.38626 7.47616 7.61373 7.80845 8.55893 9.02414 9.59276 11.10432 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.040374 B = 0.002508 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.354396 B =11161.233396 C =11329.127652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.011 3.989 3 C -0.154 4.154 4 C -0.134 4.134 5 C 0.055 3.945 6 N -0.470 5.470 7 C 0.052 3.948 8 C -0.217 4.217 9 C 0.135 3.865 10 N -0.685 5.685 11 C 0.056 3.944 12 C -0.099 4.099 13 C -0.013 4.013 14 C -0.519 4.519 15 H 0.072 0.928 16 C 0.064 3.936 17 N -0.904 5.904 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.266 1.266 22 S 0.116 5.884 23 H 0.055 0.945 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.175 0.825 33 H 0.092 0.908 34 H 0.040 0.960 35 H 0.340 0.660 36 H 0.026 0.974 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.013 0.987 41 H 0.012 0.988 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.828 12.574 -13.075 29.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.007 3.993 3 C -0.212 4.212 4 C -0.193 4.193 5 C -0.223 4.223 6 N -0.184 5.184 7 C -0.099 4.099 8 C -0.339 4.339 9 C 0.004 3.996 10 N -0.316 5.316 11 C -0.072 4.072 12 C -0.137 4.137 13 C -0.050 4.050 14 C -0.557 4.557 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.543 5.543 18 Si 0.709 3.291 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.191 1.191 22 S 0.372 5.628 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.192 0.808 33 H 0.111 0.889 34 H 0.058 0.942 35 H 0.158 0.842 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.032 0.968 41 H 0.030 0.970 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.742 12.532 -13.243 29.935 hybrid contribution 0.004 -0.047 1.654 1.655 sum -23.737 12.484 -11.589 29.217 Atomic orbital electron populations 1.21833 0.92361 1.03040 1.01969 1.19218 0.96489 0.93953 0.89647 1.22031 1.01859 0.94276 1.03072 1.21840 1.01338 1.01026 0.95103 1.27022 1.00729 0.93653 1.00891 1.66169 1.23281 1.11684 1.17220 1.21680 0.96911 1.01140 0.90163 1.25972 1.07508 0.96196 1.04179 1.20260 0.90326 0.99237 0.89787 1.60599 1.01733 1.50668 1.18597 1.22198 0.96114 0.99327 0.89563 1.21445 0.91548 1.00772 0.99969 1.19542 0.96101 0.96169 0.93238 1.21148 0.95704 1.43719 0.95142 0.91021 1.25052 0.94790 0.94651 0.99142 1.69920 1.06301 1.45581 1.32539 0.86758 0.78266 0.78984 0.85140 1.20286 1.21427 1.19106 1.83953 1.48273 1.14474 1.16095 0.92591 0.91677 0.91457 0.91713 0.90719 0.91888 0.91431 0.91682 0.92380 0.80778 0.88944 0.94209 0.84207 0.95570 0.91177 0.91849 0.92992 0.96839 0.97011 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 8.45 37.16 0.31 -0.62 16 2 C 0.01 0.09 0.99 -155.66 -0.15 -0.07 16 3 C -0.15 -0.96 7.54 37.16 0.28 -0.68 16 4 C -0.13 -1.02 8.45 37.16 0.31 -0.70 16 5 C 0.06 0.58 5.78 -13.46 -0.08 0.50 16 6 N -0.47 -5.75 10.53 -11.87 -0.12 -5.88 16 7 C 0.05 0.63 11.25 -19.19 -0.22 0.41 16 8 C -0.22 -2.50 6.11 -35.92 -0.22 -2.72 16 9 C 0.14 1.57 6.22 -4.97 -0.03 1.54 16 10 N -0.68 -9.59 6.49 -115.05 -0.75 -10.33 16 11 C 0.06 0.90 5.69 -3.82 -0.02 0.88 16 12 C -0.10 -1.97 5.41 -26.73 -0.14 -2.12 16 13 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 14 C -0.52 -15.03 9.66 -34.44 -0.33 -15.36 16 15 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 16 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.90 -28.24 13.96 55.43 0.77 -27.47 16 18 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 22 S 0.12 1.17 21.57 -107.50 -2.32 -1.15 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.42 7.93 -51.93 -0.41 0.01 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.38 7.92 -51.93 -0.41 -0.03 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.18 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.34 4.67 8.72 -39.29 -0.34 4.32 16 36 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 41 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 42 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 LS Contribution 355.36 15.07 5.36 5.36 Total: -1.00 -31.58 355.36 -9.67 -41.24 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -7.44 Total: -1.46 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -0.50 Total: -17.55 kcal Atomic # 7 Polarization: -43.58 SS G_CDS: -0.10 Total: -43.68 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.32 Total: -1.15 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.58 -9.67 -41.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236767636.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.144 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds