Wall clock time and date at job start Tue Mar 31 2020 07:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46920 * 2 1 4 4 C 1.53002 * 109.46926 * 119.99580 * 2 1 3 5 5 H 1.09006 * 109.62811 * 59.60463 * 4 2 1 6 6 C 1.53252 * 109.62913 * 179.97438 * 4 2 1 7 7 N 1.46467 * 109.85675 * 181.70645 * 6 4 2 8 8 C 1.46904 * 110.99850 * 162.23430 * 7 6 4 9 9 C 1.52994 * 109.47233 * 192.03112 * 8 7 6 10 10 H 1.09003 * 109.47157 * 304.99751 * 9 8 7 11 11 C 1.47195 * 109.47672 * 64.99939 * 9 8 7 12 12 N 6.58899 * 116.84085 * 148.92322 * 2 1 3 13 13 C 1.53001 * 109.47054 * 185.00283 * 9 8 7 14 14 C 1.50705 * 109.47305 * 174.99927 * 13 9 8 15 15 H 1.08004 * 119.99481 * 359.97438 * 14 13 9 16 16 C 1.37873 * 120.00226 * 180.02562 * 14 13 9 17 17 N 1.31517 * 119.99949 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99852 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47436 * 59.99840 * 18 16 14 20 20 H 1.48502 * 109.46529 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47053 * 299.99538 * 18 16 14 22 22 C 1.46470 * 112.56218 * 287.34514 * 7 6 4 23 23 C 1.53247 * 109.85894 * 72.65960 * 22 7 6 24 24 S 1.81896 * 108.67019 * 297.89650 * 23 22 7 25 25 H 1.08999 * 109.47194 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47313 * 300.00059 * 1 2 3 27 27 H 1.08997 * 109.47030 * 60.00245 * 1 2 3 28 28 H 1.08997 * 109.46640 * 239.99506 * 2 1 3 29 29 H 1.09001 * 109.47042 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46914 * 299.99321 * 3 2 1 31 31 H 1.08999 * 109.47815 * 59.99713 * 3 2 1 32 32 H 1.09001 * 109.40336 * 61.59289 * 6 4 2 33 33 H 1.08992 * 109.34187 * 301.78548 * 6 4 2 34 34 H 1.09002 * 109.46893 * 312.03000 * 8 7 6 35 35 H 1.08993 * 109.46736 * 72.02891 * 8 7 6 36 36 H 1.08999 * 109.47124 * 294.99070 * 13 9 8 37 37 H 1.08997 * 109.47294 * 54.99982 * 13 9 8 38 38 H 0.96996 * 119.99656 * 180.02562 * 17 16 14 39 39 H 1.08998 * 109.40164 * 312.53656 * 22 7 6 40 40 H 1.08995 * 109.33914 * 192.73797 * 22 7 6 41 41 H 1.09002 * 109.63363 * 57.70289 * 23 22 7 42 42 H 1.08995 * 109.62997 * 178.09501 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6722 -1.7473 1.2555 6 6 3.5725 -0.7239 1.2527 7 7 4.0661 -1.4485 2.4259 8 6 5.4731 -1.8341 2.2530 9 6 5.8657 -2.8333 3.3430 10 1 5.6494 -2.4063 4.3223 11 6 5.0971 -4.0765 3.1692 12 7 4.5050 -5.0353 3.0347 13 6 7.3612 -3.1395 3.2394 14 6 7.7730 -4.0266 4.3860 15 1 7.0413 -4.3402 5.1159 16 6 9.0840 -4.4369 4.5038 17 7 9.9751 -4.0546 3.6153 18 14 9.5944 -5.5359 5.9255 19 1 8.8248 -6.8048 5.8715 20 1 11.0459 -5.8332 5.8248 21 1 9.3184 -4.8439 7.2100 22 6 3.8763 -0.6993 3.6701 23 6 2.3924 -0.6927 4.0527 24 16 1.4568 0.1521 2.7413 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 3.9364 0.3032 1.2819 33 1 3.9346 -1.2109 0.3474 34 1 5.6060 -2.2939 1.2737 35 1 6.1042 -0.9486 2.3274 36 1 7.5636 -3.6474 2.2964 37 1 7.9264 -2.2084 3.2793 38 1 10.8973 -4.3436 3.6981 39 1 4.2192 0.3260 3.5313 40 1 4.4535 -1.1695 4.4662 41 1 2.0359 -1.7178 4.1546 42 1 2.2598 -0.1634 4.9962 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247511112.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:32 Heat of formation + Delta-G solvation = 7.656308 kcal Electronic energy + Delta-G solvation = -20242.767448 eV Core-core repulsion = 17348.185112 eV Total energy + Delta-G solvation = -2894.582336 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -38.88514 -36.81000 -35.62470 -33.71086 -32.06928 -30.83946 -29.12868 -27.37471 -26.30125 -23.79225 -23.32135 -21.75002 -20.92843 -20.36226 -16.82537 -16.78025 -16.51915 -15.81870 -15.23346 -15.14156 -14.64275 -14.38732 -14.10640 -13.73263 -13.35422 -13.02806 -13.00689 -12.61031 -12.56393 -12.20055 -12.15690 -11.98419 -11.81671 -11.56643 -11.44397 -11.23981 -11.18907 -11.07892 -10.91895 -10.83437 -10.60614 -10.56705 -10.18031 -9.63516 -9.57806 -9.26925 -8.49072 -8.34531 -7.65701 -6.13072 -4.16611 1.73343 2.47991 3.28709 3.33241 3.36746 3.63645 3.74197 3.81613 4.38094 4.55293 4.59099 4.81155 4.84987 4.86165 5.00883 5.14359 5.20716 5.25124 5.26548 5.39302 5.44422 5.49934 5.56520 5.59801 5.65542 5.75108 5.76140 5.78990 5.86557 5.91916 5.98821 6.11308 6.18455 6.28201 6.43476 7.00980 7.06489 7.37266 7.47466 7.81607 8.18792 8.53885 8.87729 9.49150 10.97756 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.032286 B = 0.003612 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.030084 B = 7749.523284 C = 7894.845475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.077 4.077 3 C -0.152 4.152 4 C -0.034 4.034 5 H 0.094 0.906 6 C 0.059 3.941 7 N -0.556 5.556 8 C 0.068 3.932 9 C 0.009 3.991 10 H 0.100 0.900 11 C 0.255 3.745 12 N -0.478 5.478 13 C 0.032 3.968 14 C -0.528 4.528 15 H 0.056 0.944 16 C 0.063 3.937 17 N -0.891 5.891 18 Si 0.892 3.108 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.051 3.949 23 C -0.079 4.079 24 S -0.269 6.269 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.056 0.944 36 H 0.026 0.974 37 H 0.037 0.963 38 H 0.263 0.737 39 H 0.049 0.951 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.415 12.846 -5.448 20.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.097 4.097 3 C -0.209 4.209 4 C -0.163 4.163 5 H 0.112 0.888 6 C -0.070 4.070 7 N -0.281 5.281 8 C -0.060 4.060 9 C -0.013 4.013 10 H 0.118 0.882 11 C -0.061 4.061 12 N -0.155 5.155 13 C -0.007 4.007 14 C -0.566 4.566 15 H 0.074 0.926 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.079 4.079 23 C -0.227 4.227 24 S -0.042 6.042 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.144 11.809 -5.548 20.757 hybrid contribution 1.944 -0.666 0.749 2.187 sum -14.200 11.143 -4.800 18.677 Atomic orbital electron populations 1.21868 0.94504 1.02096 1.02094 1.20966 0.96395 0.96649 0.95683 1.21965 1.01310 0.95434 1.02224 1.23436 0.97449 1.01529 0.93917 0.88792 1.22324 0.93128 0.97683 0.93858 1.61139 1.20640 1.44273 1.02004 1.22201 0.86064 0.97856 0.99904 1.19289 0.97206 0.85599 0.99175 0.88224 1.28782 0.91341 0.93979 0.92046 1.80942 1.12504 1.12213 1.09836 1.19167 0.84927 0.98144 0.98422 1.21087 0.94357 1.30887 1.10259 0.92573 1.24945 0.96628 0.96071 0.96239 1.69925 1.02973 1.45062 1.35031 0.86652 0.77482 0.81229 0.82723 1.20199 1.21162 1.20033 1.22301 0.95064 0.97297 0.93193 1.23527 0.96867 1.03752 0.98585 1.86757 1.61351 1.52496 1.03622 0.92563 0.91676 0.92599 0.90121 0.92320 0.92820 0.91325 0.92943 0.89867 0.90043 0.92545 0.95551 0.94440 0.92700 0.93232 0.88748 0.89255 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.97 37.16 0.33 -0.93 16 2 C -0.08 -0.68 2.76 -90.62 -0.25 -0.93 16 3 C -0.15 -1.28 8.60 37.16 0.32 -0.96 16 4 C -0.03 -0.36 2.58 -26.60 -0.07 -0.43 16 5 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 6 C 0.06 0.66 4.32 -3.93 -0.02 0.64 16 7 N -0.56 -7.14 4.10 -235.05 -0.96 -8.10 16 8 C 0.07 0.96 4.33 -3.83 -0.02 0.95 16 9 C 0.01 0.16 2.16 -93.41 -0.20 -0.04 16 10 H 0.10 1.66 6.08 -51.93 -0.32 1.34 16 11 C 0.26 5.23 13.66 -20.80 -0.28 4.95 16 12 N -0.48 -10.72 18.53 42.11 0.78 -9.94 16 13 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 14 C -0.53 -13.83 8.60 -34.44 -0.30 -14.13 16 15 H 0.06 1.47 7.59 -52.48 -0.40 1.07 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 18 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 22 C 0.05 0.59 5.29 -3.93 -0.02 0.57 16 23 C -0.08 -0.88 6.67 37.29 0.25 -0.63 16 24 S -0.27 -3.02 18.91 -107.50 -2.03 -5.06 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.62 6.97 -51.93 -0.36 0.25 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.49 6.48 -51.93 -0.34 0.16 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.64 6.89 -51.93 -0.36 0.29 16 32 H 0.05 0.56 6.31 -51.93 -0.33 0.23 16 33 H 0.08 0.89 7.73 -51.93 -0.40 0.48 16 34 H 0.08 1.16 7.79 -51.93 -0.40 0.76 16 35 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.05 0.55 7.91 -51.93 -0.41 0.14 16 40 H 0.09 1.12 5.82 -51.93 -0.30 0.82 16 41 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 342.77 15.07 5.17 5.17 Total: -1.00 -29.19 342.77 -8.79 -37.98 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -6.98 Total: -2.91 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -0.47 Total: -8.72 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.55 Total: -42.53 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -2.03 Total: -5.06 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.19 -8.79 -37.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247511112.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.636 kcal (2) G-P(sol) polarization free energy of solvation -29.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds