Wall clock time and date at job start Tue Mar 31 2020 06:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.34366 * 125.82723 * 2 1 4 4 C 1.31265 * 109.31094 * 179.72374 * 3 2 1 5 5 S 1.76203 * 125.80641 * 180.29228 * 4 3 2 6 6 C 1.81000 * 99.99655 * 0.17365 * 5 4 3 7 7 C 1.53008 * 109.46706 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46695 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00412 * 359.97438 * 8 7 6 10 10 C 1.37888 * 119.99407 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99430 * 179.97438 * 10 8 7 12 12 Si 1.86793 * 120.00189 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47291 * 90.00218 * 12 10 8 14 14 H 1.48507 * 109.46745 * 210.00260 * 12 10 8 15 15 H 1.48499 * 109.46981 * 329.99771 * 12 10 8 16 16 N 1.36115 * 108.39361 * 0.43993 * 4 3 2 17 17 C 1.46499 * 126.50588 * 179.83031 * 16 4 3 18 18 C 1.53000 * 109.46840 * 269.69102 * 17 16 4 19 19 C 1.52993 * 109.47345 * 65.00000 * 18 17 16 20 20 C 1.53006 * 109.46846 * 185.00008 * 18 17 16 21 21 C 1.34388 * 125.83182 * 179.97438 * 2 1 3 22 22 C 1.50696 * 126.52092 * 0.02814 * 21 2 1 23 23 H 1.08998 * 109.47310 * 270.00078 * 1 2 3 24 24 H 1.09000 * 109.47198 * 30.00830 * 1 2 3 25 25 H 1.09004 * 109.46636 * 150.00183 * 1 2 3 26 26 H 1.08999 * 109.47049 * 299.99941 * 6 5 4 27 27 H 1.08996 * 109.47437 * 60.00306 * 6 5 4 28 28 H 1.09003 * 109.46651 * 299.99747 * 7 6 5 29 29 H 1.08996 * 109.47100 * 59.99883 * 7 6 5 30 30 H 0.96998 * 119.99494 * 179.97438 * 11 10 8 31 31 H 1.09002 * 109.47391 * 149.68771 * 17 16 4 32 32 H 1.09001 * 109.46813 * 29.68828 * 17 16 4 33 33 H 1.09002 * 109.47069 * 304.99442 * 18 17 16 34 34 H 1.09002 * 109.47179 * 299.99584 * 19 18 17 35 35 H 1.08993 * 109.47639 * 59.99724 * 19 18 17 36 36 H 1.09004 * 109.47135 * 179.97438 * 19 18 17 37 37 H 1.09001 * 109.47241 * 59.99481 * 20 18 17 38 38 H 1.08996 * 109.46751 * 179.97438 * 20 18 17 39 39 H 1.09002 * 109.46824 * 299.99583 * 20 18 17 40 40 H 1.08999 * 109.46846 * 269.97226 * 22 21 2 41 41 H 1.09007 * 109.47129 * 29.97385 * 22 21 2 42 42 H 1.08998 * 109.47564 * 149.97158 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2934 1.0894 0.0000 4 6 3.5519 0.7163 0.0060 5 16 4.9465 1.7932 0.0157 6 6 4.1056 3.3961 0.0199 7 6 5.1462 4.5178 0.0279 8 6 4.4461 5.8523 0.0320 9 1 3.3670 5.8960 0.0288 10 6 5.1834 7.0174 0.0389 11 7 4.5724 8.1821 0.0420 12 14 7.0498 6.9418 0.0437 13 1 7.5483 6.9275 -1.3550 14 1 7.5915 8.1304 0.7503 15 1 7.4933 5.7074 0.7400 16 7 3.5965 -0.6442 0.0001 17 6 4.8020 -1.4766 0.0001 18 6 5.2217 -1.7664 -1.4424 19 6 5.6316 -0.4607 -2.1264 20 6 6.4051 -2.7363 -1.4441 21 6 2.2937 -1.0895 0.0005 22 6 1.8368 -2.5256 0.0005 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5140 25 1 -0.3633 -0.8901 -0.5138 26 1 3.4849 3.4831 -0.8719 27 1 3.4787 3.4752 0.9080 28 1 5.7671 4.4309 0.9195 29 1 5.7727 4.4385 -0.8604 30 1 5.0910 9.0018 0.0472 31 1 4.5953 -2.4154 0.5140 32 1 5.6067 -0.9507 0.5140 33 1 4.3858 -2.2122 -1.9814 34 1 4.7885 0.2303 -2.1251 35 1 6.4675 -0.0149 -1.5874 36 1 5.9310 -0.6672 -3.1539 37 1 6.1131 -3.6666 -0.9567 38 1 6.7038 -2.9431 -2.4718 39 1 7.2410 -2.2905 -0.9051 40 1 1.7267 -2.8718 1.0282 41 1 0.8785 -2.6020 -0.5133 42 1 2.5747 -3.1417 -0.5133 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253479521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:18 Heat of formation + Delta-G solvation = 26.031815 kcal Electronic energy + Delta-G solvation = -20093.651690 eV Core-core repulsion = 17199.866176 eV Total energy + Delta-G solvation = -2893.785514 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.86624 -36.86197 -33.72212 -32.96090 -32.63266 -31.20887 -28.91149 -27.38392 -26.59360 -25.70236 -25.11209 -21.38666 -20.69296 -20.57763 -19.32996 -17.28580 -16.90353 -15.91113 -15.64271 -15.20387 -14.41939 -14.12234 -13.91110 -13.84333 -13.55462 -13.19893 -13.01333 -12.85854 -12.72517 -12.64871 -12.50374 -12.30720 -12.14057 -12.08657 -11.75237 -11.52699 -11.18051 -11.14059 -11.03626 -10.35442 -10.28121 -10.08458 -9.76147 -9.64400 -9.35608 -9.20688 -8.72543 -8.57245 -6.98151 -6.07125 -4.06859 1.64780 1.98626 2.73325 2.99810 3.16099 3.30098 3.37451 3.40764 4.37821 4.42560 4.49162 4.61687 4.82762 4.93212 5.05015 5.07921 5.14470 5.25939 5.33198 5.33794 5.39500 5.48620 5.61304 5.64554 5.72098 5.78136 5.85069 5.93840 6.01262 6.02793 6.05891 6.11839 6.29028 6.41385 6.61170 6.88781 7.08557 7.10666 7.21100 7.67462 8.13041 8.47844 8.97001 9.52752 11.05777 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.019147 B = 0.004521 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.981924 B = 6191.459225 C = 7417.383230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.009 3.991 3 N -0.482 5.482 4 C 0.211 3.789 5 S -0.063 6.063 6 C -0.061 4.061 7 C 0.001 3.999 8 C -0.517 4.517 9 H 0.077 0.923 10 C 0.071 3.929 11 N -0.899 5.899 12 Si 0.877 3.123 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.264 1.264 16 N -0.444 5.444 17 C 0.108 3.892 18 C -0.109 4.109 19 C -0.154 4.154 20 C -0.144 4.144 21 C -0.033 4.033 22 C -0.070 4.070 23 H 0.065 0.935 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.025 0.975 29 H 0.021 0.979 30 H 0.265 0.735 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.388 -25.280 -1.474 25.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.122 4.122 3 N -0.204 5.204 4 C -0.159 4.159 5 S 0.169 5.831 6 C -0.209 4.209 7 C -0.039 4.039 8 C -0.556 4.556 9 H 0.095 0.905 10 C -0.131 4.131 11 N -0.537 5.537 12 Si 0.704 3.296 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.189 1.189 16 N -0.130 5.130 17 C -0.014 4.014 18 C -0.128 4.128 19 C -0.211 4.211 20 C -0.202 4.202 21 C -0.148 4.148 22 C -0.128 4.128 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.652 -24.611 -1.463 24.663 hybrid contribution -0.044 -0.442 0.013 0.445 sum 0.608 -25.053 -1.450 25.102 Atomic orbital electron populations 1.20013 0.87870 1.02367 1.01964 1.20476 0.96200 0.88087 1.07428 1.70756 0.98705 1.29613 1.21334 1.25160 0.98242 0.84312 1.08191 1.85364 1.03755 1.00981 1.92986 1.23639 1.01620 0.89417 1.06231 1.19433 0.94214 0.92910 0.97340 1.20931 0.95351 0.87758 1.51603 0.90518 1.24962 0.98532 0.95231 0.94364 1.69902 1.35840 0.97423 1.50527 0.86812 0.86142 0.77952 0.78679 1.20082 1.21176 1.18891 1.45390 1.05964 1.05428 1.56221 1.21995 0.85791 0.95234 0.98396 1.21498 0.98856 0.97694 0.94788 1.22027 1.02783 0.96140 1.00175 1.21782 0.97562 0.98374 1.02486 1.20946 0.83149 0.97025 1.13721 1.20156 1.01479 0.88912 1.02264 0.91596 0.91152 0.91693 0.89421 0.89492 0.95661 0.96063 0.92552 0.89338 0.88672 0.90869 0.91597 0.91610 0.92572 0.92636 0.91923 0.92078 0.91313 0.90185 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.77 10.21 36.00 0.37 -0.40 16 2 C 0.01 0.14 7.07 -82.85 -0.59 -0.44 16 3 N -0.48 -9.13 10.60 -9.67 -0.10 -9.24 16 4 C 0.21 3.67 6.69 -88.75 -0.59 3.08 16 5 S -0.06 -1.11 19.34 -107.50 -2.08 -3.19 16 6 C -0.06 -1.30 5.13 37.16 0.19 -1.11 16 7 C 0.00 0.02 4.04 -27.88 -0.11 -0.10 16 8 C -0.52 -14.84 9.66 -34.44 -0.33 -15.17 16 9 H 0.08 2.38 7.99 -52.49 -0.42 1.96 16 10 C 0.07 2.08 5.47 -17.81 -0.10 1.98 16 11 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 12 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 16 N -0.44 -6.23 2.61 -112.36 -0.29 -6.52 16 17 C 0.11 1.13 5.10 -4.04 -0.02 1.11 16 18 C -0.11 -1.03 3.13 -90.62 -0.28 -1.31 16 19 C -0.15 -1.78 7.90 37.15 0.29 -1.48 16 20 C -0.14 -1.02 9.19 37.16 0.34 -0.68 16 21 C -0.03 -0.43 6.97 -81.32 -0.57 -1.00 16 22 C -0.07 -0.60 9.78 36.00 0.35 -0.25 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.59 7.14 -51.93 -0.37 0.22 16 26 H 0.09 1.95 8.14 -51.92 -0.42 1.52 16 27 H 0.09 1.94 8.14 -51.92 -0.42 1.52 16 28 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 29 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.09 0.73 7.84 -51.93 -0.41 0.32 16 32 H 0.09 1.02 7.72 -51.93 -0.40 0.62 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.95 5.88 -51.93 -0.31 0.65 16 35 H 0.06 0.77 7.78 -51.93 -0.40 0.37 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.58 7.14 -51.93 -0.37 0.21 16 42 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 LS Contribution 348.97 15.07 5.26 5.26 Total: -1.00 -32.47 348.97 -9.41 -41.87 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -7.25 Total: -2.40 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -1.05 Total: -15.78 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.38 Total: -42.70 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -2.08 Total: -3.19 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.47 -9.41 -41.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253479521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.906 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds