Wall clock time and date at job start Tue Mar 31 2020 06:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.34366 * 125.82723 * 2 1 4 4 C 1.31265 * 109.31094 * 179.72374 * 3 2 1 5 5 S 1.76203 * 125.80641 * 180.29228 * 4 3 2 6 6 C 1.81000 * 99.99655 * 0.17365 * 5 4 3 7 7 C 1.53008 * 109.46706 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46695 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00412 * 359.97438 * 8 7 6 10 10 C 1.37888 * 119.99407 * 180.02562 * 8 7 6 11 11 N 1.31519 * 119.99430 * 179.97438 * 10 8 7 12 12 Si 1.86793 * 120.00189 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47291 * 90.00218 * 12 10 8 14 14 H 1.48507 * 109.46745 * 210.00260 * 12 10 8 15 15 H 1.48499 * 109.46981 * 329.99771 * 12 10 8 16 16 N 1.36115 * 108.39361 * 0.43993 * 4 3 2 17 17 C 1.46499 * 126.50588 * 179.83031 * 16 4 3 18 18 C 1.53000 * 109.46840 * 269.69102 * 17 16 4 19 19 C 1.52993 * 109.47345 * 65.00000 * 18 17 16 20 20 C 1.53006 * 109.46846 * 185.00008 * 18 17 16 21 21 C 1.34388 * 125.83182 * 179.97438 * 2 1 3 22 22 C 1.50696 * 126.52092 * 0.02814 * 21 2 1 23 23 H 1.08998 * 109.47310 * 270.00078 * 1 2 3 24 24 H 1.09000 * 109.47198 * 30.00830 * 1 2 3 25 25 H 1.09004 * 109.46636 * 150.00183 * 1 2 3 26 26 H 1.08999 * 109.47049 * 299.99941 * 6 5 4 27 27 H 1.08996 * 109.47437 * 60.00306 * 6 5 4 28 28 H 1.09003 * 109.46651 * 299.99747 * 7 6 5 29 29 H 1.08996 * 109.47100 * 59.99883 * 7 6 5 30 30 H 0.96998 * 119.99494 * 179.97438 * 11 10 8 31 31 H 1.09002 * 109.47391 * 149.68771 * 17 16 4 32 32 H 1.09001 * 109.46813 * 29.68828 * 17 16 4 33 33 H 1.09002 * 109.47069 * 304.99442 * 18 17 16 34 34 H 1.09002 * 109.47179 * 299.99584 * 19 18 17 35 35 H 1.08993 * 109.47639 * 59.99724 * 19 18 17 36 36 H 1.09004 * 109.47135 * 179.97438 * 19 18 17 37 37 H 1.09001 * 109.47241 * 59.99481 * 20 18 17 38 38 H 1.08996 * 109.46751 * 179.97438 * 20 18 17 39 39 H 1.09002 * 109.46824 * 299.99583 * 20 18 17 40 40 H 1.08999 * 109.46846 * 269.97226 * 22 21 2 41 41 H 1.09007 * 109.47129 * 29.97385 * 22 21 2 42 42 H 1.08998 * 109.47564 * 149.97158 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2934 1.0894 0.0000 4 6 3.5519 0.7163 0.0060 5 16 4.9465 1.7932 0.0157 6 6 4.1056 3.3961 0.0199 7 6 5.1462 4.5178 0.0279 8 6 4.4461 5.8523 0.0320 9 1 3.3670 5.8960 0.0288 10 6 5.1834 7.0174 0.0389 11 7 4.5724 8.1821 0.0420 12 14 7.0498 6.9418 0.0437 13 1 7.5483 6.9275 -1.3550 14 1 7.5915 8.1304 0.7503 15 1 7.4933 5.7074 0.7400 16 7 3.5965 -0.6442 0.0001 17 6 4.8020 -1.4766 0.0001 18 6 5.2217 -1.7664 -1.4424 19 6 5.6316 -0.4607 -2.1264 20 6 6.4051 -2.7363 -1.4441 21 6 2.2937 -1.0895 0.0005 22 6 1.8368 -2.5256 0.0005 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8899 -0.5140 25 1 -0.3633 -0.8901 -0.5138 26 1 3.4849 3.4831 -0.8719 27 1 3.4787 3.4752 0.9080 28 1 5.7671 4.4309 0.9195 29 1 5.7727 4.4385 -0.8604 30 1 5.0910 9.0018 0.0472 31 1 4.5953 -2.4154 0.5140 32 1 5.6067 -0.9507 0.5140 33 1 4.3858 -2.2122 -1.9814 34 1 4.7885 0.2303 -2.1251 35 1 6.4675 -0.0149 -1.5874 36 1 5.9310 -0.6672 -3.1539 37 1 6.1131 -3.6666 -0.9567 38 1 6.7038 -2.9431 -2.4718 39 1 7.2410 -2.2905 -0.9051 40 1 1.7267 -2.8718 1.0282 41 1 0.8785 -2.6020 -0.5133 42 1 2.5747 -3.1417 -0.5133 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253479521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:18 Heat of formation + Delta-G solvation = 7.768189 kcal Electronic energy + Delta-G solvation = -20094.443661 eV Core-core repulsion = 17199.866176 eV Total energy + Delta-G solvation = -2894.577485 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.98539 -37.71316 -35.80555 -33.95923 -33.65518 -33.28213 -29.78400 -28.17059 -27.80747 -27.25010 -26.33769 -22.98276 -22.09032 -21.46994 -20.42821 -19.16107 -18.37339 -16.98868 -16.77937 -16.42749 -15.98776 -15.69784 -15.30360 -14.89998 -14.81247 -14.52794 -14.09700 -13.90562 -13.74328 -13.69275 -13.58881 -13.27061 -13.15375 -13.09533 -12.94517 -12.84291 -12.40133 -12.17316 -12.08092 -11.96096 -11.93567 -11.79202 -11.66900 -11.21949 -10.92878 -10.81039 -10.46033 -9.93719 -8.32876 -8.27779 -6.39801 0.29291 0.87298 1.19146 1.36012 1.38043 1.50058 1.93028 1.96142 2.34158 3.01449 3.58171 3.68609 3.75106 4.03946 4.10718 4.14927 4.19260 4.24057 4.27652 4.38456 4.58823 4.62768 4.69983 4.72061 4.77681 4.87759 4.90711 4.96940 5.00167 5.05272 5.10752 5.15660 5.15941 5.24470 5.34813 5.37565 5.41746 5.51353 5.78717 6.07612 6.19881 6.65775 6.96360 7.24005 8.83870 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.019147 B = 0.004521 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.981924 B = 6191.459225 C = 7417.383230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.031 4.031 3 N -0.528 5.528 4 C 0.176 3.824 5 S -0.021 6.021 6 C -0.060 4.060 7 C 0.009 3.991 8 C -0.534 4.534 9 H 0.031 0.969 10 C 0.011 3.989 11 N -0.947 5.947 12 Si 0.951 3.049 13 H -0.262 1.262 14 H -0.279 1.279 15 H -0.244 1.244 16 N -0.436 5.436 17 C 0.099 3.901 18 C -0.101 4.101 19 C -0.154 4.154 20 C -0.138 4.138 21 C -0.011 4.011 22 C -0.069 4.069 23 H 0.072 0.928 24 H 0.051 0.949 25 H 0.097 0.903 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.033 0.967 29 H 0.032 0.968 30 H 0.270 0.730 31 H 0.121 0.879 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.032 0.968 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.449 -29.249 -1.460 29.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.161 4.161 3 N -0.251 5.251 4 C -0.194 4.194 5 S 0.210 5.790 6 C -0.209 4.209 7 C -0.030 4.030 8 C -0.573 4.573 9 H 0.049 0.951 10 C -0.187 4.187 11 N -0.587 5.587 12 Si 0.773 3.227 13 H -0.187 1.187 14 H -0.204 1.204 15 H -0.168 1.168 16 N -0.122 5.122 17 C -0.022 4.022 18 C -0.120 4.120 19 C -0.212 4.212 20 C -0.196 4.196 21 C -0.129 4.129 22 C -0.127 4.127 23 H 0.091 0.909 24 H 0.071 0.929 25 H 0.115 0.885 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.139 0.861 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.115 0.885 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.495 -28.604 -1.450 28.750 hybrid contribution -0.774 0.680 -0.008 1.030 sum 1.721 -27.925 -1.459 28.016 Atomic orbital electron populations 1.20078 0.86015 1.03067 1.02601 1.21124 0.97765 0.88091 1.09168 1.70652 1.00052 1.32204 1.22197 1.24911 0.97649 0.85887 1.10966 1.84827 1.02875 0.97728 1.93529 1.23208 1.00924 0.92343 1.04385 1.19257 0.94422 0.91500 0.97830 1.21206 0.93732 0.90635 1.51772 0.95081 1.25982 1.04688 0.94456 0.93570 1.70058 1.38366 0.98456 1.51771 0.85656 0.78570 0.78927 0.79586 1.18685 1.20448 1.16751 1.45634 1.07448 1.04403 1.54683 1.22363 0.84404 0.95869 0.99518 1.21447 0.99941 0.96961 0.93635 1.22006 1.01230 0.96780 1.01179 1.21746 0.96309 0.98378 1.03172 1.21737 0.82309 0.98790 1.10015 1.20376 1.02750 0.85569 1.03960 0.90950 0.92943 0.88465 0.91355 0.91431 0.94915 0.95016 0.92154 0.86085 0.89071 0.90716 0.94882 0.92046 0.91616 0.90641 0.91416 0.92006 0.89491 0.88455 0.90083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.40 10.21 71.23 0.73 -0.67 16 2 C -0.03 -0.96 7.07 41.29 0.29 -0.66 16 3 N -0.53 -20.70 10.60 -184.52 -1.96 -22.65 16 4 C 0.18 6.18 6.69 179.69 1.20 7.38 16 5 S -0.02 -0.75 19.34 -56.49 -1.09 -1.84 16 6 C -0.06 -2.69 5.13 71.98 0.37 -2.32 16 7 C 0.01 0.45 4.04 29.85 0.12 0.57 16 8 C -0.53 -32.12 9.66 25.60 0.25 -31.87 16 9 H 0.03 2.08 7.99 -2.91 -0.02 2.05 16 10 C 0.01 0.64 5.47 84.66 0.46 1.11 16 11 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 12 Si 0.95 44.46 27.47 68.60 1.88 46.34 16 13 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 15 H -0.24 -10.56 6.54 99.48 0.65 -9.91 16 16 N -0.44 -11.54 2.61 -509.41 -1.33 -12.88 16 17 C 0.10 1.79 5.10 86.38 0.44 2.23 16 18 C -0.10 -1.61 3.13 -10.79 -0.03 -1.64 16 19 C -0.15 -3.37 7.90 71.98 0.57 -2.80 16 20 C -0.14 -1.43 9.19 71.98 0.66 -0.77 16 21 C -0.01 -0.28 6.97 40.76 0.28 0.01 16 22 C -0.07 -0.88 9.78 71.23 0.70 -0.19 16 23 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.10 1.55 7.14 -2.38 -0.02 1.53 16 26 H 0.07 3.27 8.14 -2.40 -0.02 3.25 16 27 H 0.07 3.24 8.14 -2.40 -0.02 3.22 16 28 H 0.03 1.56 7.20 -2.39 -0.02 1.55 16 29 H 0.03 1.50 7.57 -2.39 -0.02 1.48 16 30 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 31 H 0.12 1.42 7.84 -2.39 -0.02 1.40 16 32 H 0.09 1.74 7.72 -2.39 -0.02 1.72 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.03 0.94 5.88 -2.39 -0.01 0.93 16 35 H 0.06 1.36 7.78 -2.39 -0.02 1.34 16 36 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.10 0.97 7.14 -2.38 -0.02 0.95 16 42 H 0.08 0.77 7.90 -2.39 -0.02 0.75 16 Total: -1.00 -75.14 348.97 4.76 -70.38 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 0.92 Total: 10.42 kcal Atomic # 6 Polarization: -35.67 SS G_CDS: 6.04 Total: -29.63 kcal Atomic # 7 Polarization: -92.67 SS G_CDS: -2.99 Total: -95.66 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 1.88 Total: 46.34 kcal Atomic # 16 Polarization: -0.75 SS G_CDS: -1.09 Total: -1.84 kcal Total: -75.14 4.76 -70.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253479521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.149 kcal (2) G-P(sol) polarization free energy of solvation -75.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds