Wall clock time and date at job start Tue Mar 31 2020 06:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.29018 * 124.91722 * 2 1 4 4 C 1.31784 * 117.12555 * 180.02562 * 3 2 1 5 5 C 1.50696 * 122.75407 * 180.02562 * 4 3 2 6 6 C 1.33641 * 114.49851 * 0.02562 * 4 3 2 7 7 C 1.50703 * 126.03730 * 179.97438 * 6 4 3 8 8 N 1.46906 * 109.47109 * 90.00197 * 7 6 4 9 9 C 1.46895 * 110.99789 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.47035 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47191 * 300.00419 * 10 9 8 12 12 C 1.52999 * 109.46983 * 59.99979 * 10 9 8 13 13 C 1.52998 * 109.47380 * 180.02562 * 10 9 8 14 14 C 1.50694 * 109.47182 * 180.02562 * 13 10 9 15 15 H 1.07997 * 120.00285 * 359.97438 * 14 13 10 16 16 C 1.37876 * 120.00214 * 180.02562 * 14 13 10 17 17 N 1.31515 * 119.99912 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00442 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47077 * 89.99789 * 18 16 14 20 20 H 1.48500 * 109.47337 * 209.99979 * 18 16 14 21 21 H 1.48503 * 109.47045 * 330.00289 * 18 16 14 22 22 S 1.70980 * 124.91144 * 180.32324 * 2 1 3 23 23 H 1.08997 * 109.47053 * 89.97061 * 1 2 3 24 24 H 1.08999 * 109.46788 * 209.96885 * 1 2 3 25 25 H 1.09001 * 109.46493 * 329.97402 * 1 2 3 26 26 H 1.08998 * 109.46913 * 270.00143 * 5 4 3 27 27 H 1.09004 * 109.47243 * 29.99352 * 5 4 3 28 28 H 1.08996 * 109.47554 * 150.00155 * 5 4 3 29 29 H 1.08992 * 109.46894 * 329.99932 * 7 6 4 30 30 H 1.09004 * 109.47113 * 210.00083 * 7 6 4 31 31 H 1.00902 * 111.00068 * 56.04268 * 8 7 6 32 32 H 1.08996 * 109.47424 * 299.99656 * 9 8 7 33 33 H 1.09002 * 109.47411 * 60.00282 * 9 8 7 34 34 H 1.09003 * 109.47221 * 59.99243 * 11 10 9 35 35 H 1.08997 * 109.47170 * 180.02562 * 11 10 9 36 36 H 1.09005 * 109.46721 * 299.99839 * 11 10 9 37 37 H 1.09001 * 109.47612 * 60.00211 * 12 10 9 38 38 H 1.08997 * 109.47506 * 180.02562 * 12 10 9 39 39 H 1.09004 * 109.47572 * 300.00136 * 12 10 9 40 40 H 1.08999 * 109.46979 * 300.00363 * 13 10 9 41 41 H 1.08996 * 109.46919 * 59.99709 * 13 10 9 42 42 H 0.97000 * 120.00251 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2456 1.0579 0.0000 4 6 3.5512 0.8793 -0.0005 5 6 4.5309 2.0244 0.0000 6 6 3.9354 -0.4007 -0.0015 7 6 5.3575 -0.8996 -0.0029 8 7 5.8206 -1.0625 1.3817 9 6 7.2061 -1.5492 1.4196 10 6 7.6521 -1.7055 2.8748 11 6 7.5676 -0.3515 3.5824 12 6 6.7396 -2.7088 3.5830 13 6 9.0954 -2.2118 2.9143 14 6 9.5345 -2.3663 4.3475 15 1 8.8525 -2.1269 5.1501 16 6 10.8072 -2.8122 4.6344 17 7 11.6378 -3.1033 3.6572 18 14 11.3517 -3.0031 6.4111 19 1 11.0330 -4.3750 6.8818 20 1 12.8159 -2.7744 6.5074 21 1 10.6392 -2.0117 7.2564 22 16 2.4856 -1.4021 -0.0079 23 1 -0.3633 0.0005 -1.0276 24 1 -0.3633 -0.8903 0.5134 25 1 -0.3632 0.8898 0.5143 26 1 4.7667 2.3012 -1.0276 27 1 4.0909 2.8787 0.5145 28 1 5.4435 1.7217 0.5133 29 1 5.9945 -0.1798 -0.5167 30 1 5.4054 -1.8594 -0.5173 31 1 5.2079 -1.6758 1.8981 32 1 7.2663 -2.5135 0.9152 33 1 7.8563 -0.8342 0.9155 34 1 6.5395 0.0096 3.5542 35 1 7.8858 -0.4628 4.6189 36 1 8.2177 0.3633 3.0778 37 1 6.7997 -3.6734 3.0790 38 1 7.0570 -2.8198 4.6197 39 1 5.7115 -2.3477 3.5549 40 1 9.1560 -3.1762 2.4101 41 1 9.7452 -1.4967 2.4099 42 1 12.5331 -3.4174 3.8590 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266129784.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:49 Heat of formation + Delta-G solvation = -0.539700 kcal Electronic energy + Delta-G solvation = -19867.521181 eV Core-core repulsion = 16972.583439 eV Total energy + Delta-G solvation = -2894.937742 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.92484 -39.20150 -36.28257 -34.49903 -33.44797 -30.32224 -29.80083 -28.76174 -27.89692 -26.71752 -25.11919 -23.80119 -23.46374 -20.11853 -19.32872 -18.86055 -18.32115 -16.87414 -16.59576 -16.29398 -15.72743 -15.54418 -15.27931 -14.79787 -14.43790 -14.31892 -14.22635 -13.99715 -13.87774 -13.51122 -13.40264 -13.23887 -12.86638 -12.79898 -12.69268 -12.64479 -12.47597 -12.24278 -12.15063 -12.01995 -11.89912 -11.38072 -10.87702 -10.79400 -10.59603 -10.49584 -10.26168 -9.54029 -9.32461 -8.13487 -6.20057 -0.27752 0.38771 0.77238 1.41086 1.41650 1.52215 1.78527 2.44186 3.17413 3.20654 3.33951 3.85998 4.04803 4.09173 4.17580 4.24431 4.38473 4.56099 4.59136 4.65675 4.67084 4.76601 4.77336 4.81165 4.88005 4.96010 5.05233 5.07651 5.12735 5.20838 5.22056 5.41869 5.52546 5.54781 5.59110 5.64823 5.87467 5.93401 5.99846 6.37251 6.40235 6.80066 6.95115 7.47199 8.98789 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.035594 B = 0.003139 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.460486 B = 8918.959717 C = 9065.754317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.043 3.957 3 N -0.503 5.503 4 C 0.069 3.931 5 C -0.077 4.077 6 C -0.234 4.234 7 C 0.140 3.860 8 N -0.676 5.676 9 C 0.082 3.918 10 C -0.055 4.055 11 C -0.106 4.106 12 C -0.123 4.123 13 C 0.041 3.959 14 C -0.514 4.514 15 H 0.065 0.935 16 C -0.003 4.003 17 N -0.937 5.937 18 Si 0.954 3.046 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.264 1.264 22 S 0.130 5.870 23 H 0.101 0.899 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.045 0.955 31 H 0.342 0.658 32 H 0.022 0.978 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.036 0.964 36 H 0.033 0.967 37 H 0.038 0.962 38 H 0.046 0.954 39 H 0.063 0.937 40 H -0.015 1.015 41 H -0.013 1.013 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.804 5.092 -8.946 24.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.235 4.235 3 N -0.219 5.219 4 C -0.063 4.063 5 C -0.136 4.136 6 C -0.355 4.355 7 C 0.009 3.991 8 N -0.309 5.309 9 C -0.047 4.047 10 C -0.055 4.055 11 C -0.163 4.163 12 C -0.180 4.180 13 C 0.003 3.997 14 C -0.552 4.552 15 H 0.083 0.917 16 C -0.200 4.200 17 N -0.579 5.579 18 Si 0.780 3.220 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.188 1.188 22 S 0.386 5.614 23 H 0.119 0.881 24 H 0.118 0.882 25 H 0.109 0.891 26 H 0.101 0.899 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.115 0.885 30 H 0.063 0.937 31 H 0.161 0.839 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.004 0.996 41 H 0.005 0.995 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.954 5.119 -8.919 24.243 hybrid contribution 1.446 -0.525 0.474 1.610 sum -20.508 4.593 -8.445 22.649 Atomic orbital electron populations 1.20622 0.82774 1.05239 1.05094 1.27588 1.03120 0.90785 1.01970 1.66213 1.04960 1.32748 1.17982 1.20433 0.90252 0.94865 1.00739 1.20392 0.96061 0.93942 1.03223 1.25618 0.99771 0.95899 1.14173 1.20217 0.88221 1.00020 0.90631 1.60568 1.02988 1.55007 1.12290 1.21854 0.89018 0.97328 0.96452 1.20491 0.95332 0.96031 0.93646 1.21491 1.00512 0.95268 0.99053 1.21685 0.98156 0.97641 1.00504 1.18994 0.91421 0.93753 0.95509 1.21618 0.97809 1.42192 0.93560 0.91736 1.25892 0.97253 0.95796 1.01078 1.70101 1.07197 1.47189 1.33398 0.85606 0.77224 0.78674 0.80524 1.20105 1.21265 1.18807 1.83820 0.97123 1.11907 1.68589 0.88079 0.88207 0.89092 0.89903 0.90969 0.89985 0.88550 0.93740 0.83911 0.95946 0.91683 0.91751 0.94461 0.94790 0.94290 0.93469 0.91857 0.99639 0.99499 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.46 71.24 0.75 -0.13 16 2 C 0.04 0.85 7.39 88.52 0.65 1.51 16 3 N -0.50 -12.49 10.53 -179.40 -1.89 -14.38 16 4 C 0.07 1.70 6.74 41.52 0.28 1.98 16 5 C -0.08 -1.63 9.82 71.23 0.70 -0.93 16 6 C -0.23 -5.40 6.10 24.64 0.15 -5.25 16 7 C 0.14 3.25 5.61 85.56 0.48 3.73 16 8 N -0.68 -18.22 5.70 -517.92 -2.95 -21.18 16 9 C 0.08 2.70 4.65 86.31 0.40 3.10 16 10 C -0.05 -2.13 0.60 -52.18 -0.03 -2.16 16 11 C -0.11 -4.00 8.06 71.98 0.58 -3.42 16 12 C -0.12 -4.39 7.89 71.98 0.57 -3.82 16 13 C 0.04 2.09 4.04 29.85 0.12 2.21 16 14 C -0.51 -28.29 7.65 25.60 0.20 -28.09 16 15 H 0.06 3.42 5.68 -2.91 -0.02 3.41 16 16 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 17 N -0.94 -57.10 13.29 21.45 0.28 -56.82 16 18 Si 0.95 44.42 29.54 68.60 2.03 46.45 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 22 S 0.13 2.49 23.18 -56.49 -1.31 1.18 16 23 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.08 1.81 7.35 -2.39 -0.02 1.79 16 29 H 0.10 2.15 7.43 -2.39 -0.02 2.13 16 30 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.34 9.00 6.76 -89.69 -0.61 8.39 16 32 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.06 2.14 7.60 -2.39 -0.02 2.12 16 35 H 0.04 1.51 6.62 -2.39 -0.02 1.50 16 36 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.05 1.85 6.62 -2.39 -0.02 1.83 16 39 H 0.06 1.87 6.57 -2.38 -0.02 1.86 16 40 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 41 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 42 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -65.27 348.68 1.86 -63.42 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.39 Total: 12.34 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: 5.31 Total: -31.02 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -4.56 Total: -92.37 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.31 Total: 1.18 kcal Total: -65.27 1.86 -63.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266129784.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.877 kcal (2) G-P(sol) polarization free energy of solvation -65.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds