Wall clock time and date at job start Tue Mar 31 2020 07:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47151 * 2 1 4 4 C 1.52998 * 109.47231 * 240.00372 * 2 1 3 5 5 C 1.50701 * 109.47357 * 59.99828 * 4 2 1 6 6 H 1.07999 * 119.99687 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00137 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00266 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99919 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47143 * 90.00068 * 9 7 5 11 11 H 1.48506 * 109.46848 * 210.00122 * 9 7 5 12 12 H 1.48504 * 109.47113 * 329.99756 * 9 7 5 13 13 C 1.53003 * 109.47284 * 120.00108 * 2 1 3 14 14 N 1.46903 * 109.46899 * 300.00454 * 13 2 1 15 15 C 1.46898 * 110.99673 * 179.97438 * 14 13 2 16 16 C 1.53006 * 109.47006 * 179.97438 * 15 14 13 17 17 C 1.52997 * 109.47127 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.47242 * 180.02562 * 17 16 15 19 19 N 1.29034 * 124.91539 * 89.69189 * 18 17 16 20 20 C 1.31779 * 117.12503 * 179.81507 * 19 18 17 21 21 C 1.33645 * 114.49791 * 0.47738 * 20 19 18 22 22 S 1.70976 * 124.91972 * 270.00534 * 18 17 16 23 23 H 1.09004 * 109.47066 * 299.99897 * 1 2 3 24 24 H 1.09004 * 109.46990 * 59.99909 * 1 2 3 25 25 H 1.09002 * 109.46764 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47147 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47495 * 300.00396 * 3 2 1 28 28 H 1.09004 * 109.46784 * 59.99614 * 3 2 1 29 29 H 1.09006 * 109.47316 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.47225 * 299.99691 * 4 2 1 31 31 H 0.96994 * 120.00626 * 179.97438 * 8 7 5 32 32 H 1.08993 * 109.47042 * 180.02562 * 13 2 1 33 33 H 1.08995 * 109.46589 * 59.99635 * 13 2 1 34 34 H 1.00895 * 111.00497 * 56.03863 * 14 13 2 35 35 H 1.09001 * 109.47062 * 59.99745 * 15 14 13 36 36 H 1.08993 * 109.47084 * 299.99192 * 15 14 13 37 37 H 1.09001 * 109.46801 * 300.00064 * 16 15 14 38 38 H 1.09001 * 109.46998 * 59.99660 * 16 15 14 39 39 H 1.08996 * 109.46952 * 300.00302 * 17 16 15 40 40 H 1.09001 * 109.46832 * 60.00321 * 17 16 15 41 41 H 1.08001 * 122.74945 * 180.23017 * 20 19 18 42 42 H 1.07999 * 126.03024 * 179.71904 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5377 -0.0107 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8704 -0.4820 -3.7320 8 7 1.4324 0.1382 -4.8058 9 14 2.9432 -2.0016 -3.9034 10 1 2.0838 -3.2117 -3.9488 11 1 3.7352 -1.9096 -5.1563 12 1 3.8636 -2.0914 -2.7415 13 6 2.0400 -0.7213 1.2492 14 7 1.5503 -0.0288 2.4487 15 6 2.0208 -0.6953 3.6703 16 6 1.4922 0.0532 4.8956 17 6 1.9818 -0.6413 6.1679 18 6 1.4606 0.0955 7.3747 19 7 0.3383 -0.1500 7.9622 20 6 0.0349 0.5883 9.0107 21 6 0.9477 1.5145 9.3192 22 16 2.2673 1.3828 8.1592 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9565 -0.8899 28 1 1.6766 1.9564 0.8900 29 1 3.1301 -0.7216 -1.2490 30 1 1.6767 -1.7489 -1.2493 31 1 1.6668 -0.1931 -5.6868 32 1 3.1300 -0.7209 1.2494 33 1 1.6766 -1.7489 1.2492 34 1 0.5438 0.0413 2.4402 35 1 3.1107 -0.6955 3.6873 36 1 1.6570 -1.7226 3.6868 37 1 1.8564 1.0804 4.8788 38 1 0.4023 0.0538 4.8787 39 1 1.6173 -1.6684 6.1843 40 1 3.0717 -0.6422 6.1849 41 1 -0.8785 0.4584 9.5721 42 1 0.8867 2.2194 10.1351 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266169276.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:23 Heat of formation + Delta-G solvation = 19.923862 kcal Electronic energy + Delta-G solvation = -19285.523191 eV Core-core repulsion = 16391.472815 eV Total energy + Delta-G solvation = -2894.050375 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.96927 -37.91226 -35.78854 -33.34655 -32.05432 -30.03323 -27.82970 -26.94192 -26.35050 -24.98461 -23.59648 -21.84934 -21.53522 -20.20582 -18.27575 -17.81195 -16.77793 -16.09906 -15.76681 -15.03040 -14.94713 -14.59336 -14.21160 -13.83884 -13.76955 -13.52463 -13.09253 -12.71575 -12.38780 -12.18373 -11.97529 -11.94440 -11.82628 -11.45616 -11.08875 -11.01569 -10.87232 -10.78387 -10.46984 -10.31278 -9.94008 -9.79333 -9.72673 -9.65379 -9.30241 -9.16992 -8.88058 -8.48115 -8.15480 -5.98310 -3.94355 0.38148 1.04169 1.43408 2.51858 3.33223 3.40980 3.44579 3.77633 4.34838 4.49772 4.61298 4.79649 4.86022 5.08612 5.14815 5.21494 5.28436 5.34732 5.47548 5.59240 5.62960 5.69559 5.82391 5.89221 5.99913 6.05400 6.18207 6.27524 6.44069 6.61686 6.71307 6.82284 7.10089 7.16006 7.20562 7.31504 7.35379 7.42444 7.48524 7.63995 7.87326 8.61753 9.07756 9.64837 11.14830 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.044058 B = 0.002466 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.375754 B =11349.521473 C =11476.311912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.049 4.049 3 C -0.117 4.117 4 C -0.005 4.005 5 C -0.506 4.506 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.068 3.932 14 N -0.687 5.687 15 C 0.059 3.941 16 C -0.110 4.110 17 C -0.045 4.045 18 C 0.060 3.940 19 N -0.478 5.478 20 C 0.039 3.961 21 C -0.267 4.267 22 S 0.121 5.879 23 H 0.035 0.965 24 H 0.069 0.931 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.060 0.940 28 H 0.044 0.956 29 H 0.015 0.985 30 H 0.008 0.992 31 H 0.261 0.739 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.340 0.660 35 H 0.071 0.929 36 H 0.028 0.972 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.175 0.825 42 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.185 0.677 27.903 27.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.049 4.049 3 C -0.175 4.175 4 C -0.043 4.043 5 C -0.544 4.544 6 H 0.096 0.904 7 C -0.137 4.137 8 N -0.546 5.546 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.191 1.191 13 C -0.061 4.061 14 N -0.319 5.319 15 C -0.071 4.071 16 C -0.149 4.149 17 C -0.086 4.086 18 C -0.218 4.218 19 N -0.192 5.192 20 C -0.112 4.112 21 C -0.406 4.406 22 S 0.375 5.625 23 H 0.054 0.946 24 H 0.088 0.912 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.026 0.974 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.159 0.841 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.192 0.808 42 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.308 1.234 27.356 27.481 hybrid contribution -0.850 -1.731 0.370 1.963 sum 1.458 -0.497 27.726 27.768 Atomic orbital electron populations 1.21789 0.95634 1.00458 1.00966 1.20421 0.95066 0.96190 0.93270 1.21611 0.99652 0.95515 1.00700 1.19635 0.96030 0.95241 0.93355 1.21139 1.31428 1.13162 0.88679 0.90421 1.25023 0.95828 0.96772 0.96040 1.69904 1.46205 1.40639 0.97816 0.86845 0.81305 0.83994 0.77501 1.20534 1.21567 1.19119 1.22132 0.99733 0.94662 0.89565 1.60530 1.16546 1.53683 1.01115 1.21908 1.00455 0.95147 0.89564 1.21556 1.01492 1.00204 0.91696 1.20297 1.00714 0.99288 0.88321 1.27188 0.93874 0.99116 1.01652 1.66295 1.15992 1.27978 1.08942 1.21836 1.01141 0.93274 0.94910 1.27095 0.99005 1.07617 1.06875 1.84126 1.23266 1.32253 1.22834 0.94557 0.91164 0.94158 0.94237 0.92151 0.93668 0.96711 0.97411 0.92905 0.91588 0.95896 0.84110 0.91061 0.95419 0.90686 0.91397 0.88721 0.89380 0.80808 0.80642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 7.89 37.16 0.29 -2.12 16 2 C -0.05 -0.94 0.60 -154.51 -0.09 -1.04 16 3 C -0.12 -2.25 8.06 37.16 0.30 -1.96 16 4 C 0.00 -0.11 3.11 -27.88 -0.09 -0.20 16 5 C -0.51 -14.00 8.20 -34.44 -0.28 -14.28 16 6 H 0.08 2.29 5.92 -52.49 -0.31 1.98 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.91 -27.86 13.96 55.43 0.77 -27.08 16 9 Si 0.88 21.82 27.47 -169.99 -4.67 17.15 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 13 C 0.07 1.10 4.65 -3.82 -0.02 1.08 16 14 N -0.69 -9.36 5.71 -113.78 -0.65 -10.01 16 15 C 0.06 0.64 5.68 -3.82 -0.02 0.62 16 16 C -0.11 -1.04 5.46 -26.73 -0.15 -1.19 16 17 C -0.04 -0.37 5.80 -27.89 -0.16 -0.53 16 18 C 0.06 0.57 6.64 -13.46 -0.09 0.48 16 19 N -0.48 -5.19 10.54 -11.86 -0.13 -5.32 16 20 C 0.04 0.34 11.35 -19.18 -0.22 0.12 16 21 C -0.27 -1.94 11.37 29.12 0.33 -1.61 16 22 S 0.12 0.96 23.18 -107.50 -2.49 -1.54 16 23 H 0.04 0.57 6.57 -51.93 -0.34 0.23 16 24 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 28 H 0.04 0.78 7.60 -51.93 -0.39 0.39 16 29 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 30 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.34 4.54 6.77 -39.29 -0.27 4.27 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 346.61 15.07 5.22 5.22 Total: -1.00 -31.01 346.61 -9.24 -40.24 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -7.01 Total: 0.22 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -0.29 Total: -18.88 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.00 Total: -42.42 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.15 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.49 Total: -1.54 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.01 -9.24 -40.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266169276.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.166 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds