Wall clock time and date at job start Tue Mar 31 2020 05:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47265 * 2 1 4 4 O 1.42908 * 109.46914 * 119.99647 * 2 1 3 5 5 C 1.50691 * 109.47237 * 239.99594 * 2 1 3 6 6 C 1.35353 * 126.75126 * 125.00115 * 5 2 1 7 7 N 1.35313 * 106.17543 * 180.02562 * 6 5 2 8 8 C 1.46506 * 125.86834 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.46998 * 124.99958 * 8 7 6 10 10 O 1.21274 * 120.00115 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99735 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00065 * 359.97438 * 11 9 8 13 13 C 1.46506 * 120.00000 * 180.02562 * 11 9 8 14 14 H 1.08998 * 109.46566 * 359.97438 * 13 11 9 15 15 C 1.52997 * 109.47289 * 119.99453 * 13 11 9 16 16 C 1.50697 * 109.47015 * 239.99910 * 13 11 9 17 17 H 1.07998 * 120.00039 * 359.97438 * 16 13 11 18 18 C 1.37880 * 119.99815 * 179.97438 * 16 13 11 19 19 N 1.31508 * 119.99915 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99777 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46954 * 59.99790 * 20 18 16 22 22 H 1.48496 * 109.46873 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47158 * 300.00368 * 20 18 16 24 24 N 1.28717 * 108.26586 * 0.26198 * 7 6 5 25 25 N 1.28638 * 110.17400 * 359.56129 * 24 7 6 26 26 H 1.09001 * 109.47265 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47165 * 299.99839 * 1 2 3 28 28 H 1.08998 * 109.47096 * 60.00182 * 1 2 3 29 29 H 0.96698 * 113.99917 * 60.00236 * 4 2 1 30 30 H 1.07997 * 126.90946 * 359.97438 * 6 5 2 31 31 H 1.09002 * 109.46843 * 5.00168 * 8 7 6 32 32 H 1.09000 * 109.46973 * 245.00050 * 8 7 6 33 33 H 1.09000 * 109.46842 * 270.00180 * 12 11 9 34 34 H 1.08994 * 109.47173 * 30.00714 * 12 11 9 35 35 H 1.08998 * 109.46730 * 150.00747 * 12 11 9 36 36 H 1.09002 * 109.47153 * 179.97438 * 15 13 11 37 37 H 1.09001 * 109.46832 * 60.00146 * 15 13 11 38 38 H 1.09004 * 109.47261 * 300.00128 * 15 13 11 39 39 H 0.97001 * 119.99839 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.0323 -0.7104 -1.2303 6 6 2.8888 -0.2193 -2.1562 7 7 3.0535 -1.1991 -3.0748 8 6 3.8978 -1.1226 -4.2696 9 6 4.8692 -2.2746 -4.2728 10 8 4.8578 -3.0800 -3.3662 11 7 5.7514 -2.4093 -5.2828 12 6 5.7656 -1.4361 -6.3777 13 6 6.6955 -3.5297 -5.2863 14 1 6.5354 -4.1423 -4.3991 15 6 6.4746 -4.3789 -6.5397 16 6 8.1056 -2.9983 -5.2816 17 1 8.2811 -1.9327 -5.2769 18 6 9.1718 -3.8726 -5.2832 19 7 8.9580 -5.1702 -5.2884 20 14 10.9198 -3.2139 -5.2781 21 1 11.1343 -2.3887 -4.0621 22 1 11.8767 -4.3494 -5.2803 23 1 11.1380 -2.3796 -6.4871 24 7 2.3361 -2.2078 -2.7216 25 7 1.7191 -1.9504 -1.6226 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.7210 -1.5952 1.2330 30 1 3.3477 0.7584 -2.1613 31 1 4.4493 -0.1823 -4.2651 32 1 3.2719 -1.1725 -5.1606 33 1 5.0897 -1.7667 -7.1664 34 1 5.4413 -0.4647 -6.0046 35 1 6.7765 -1.3530 -6.7768 36 1 7.1773 -5.2121 -6.5425 37 1 6.6349 -3.7659 -7.4267 38 1 5.4546 -4.7632 -6.5431 39 1 9.7081 -5.7853 -5.2892 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268599692.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:32 Heat of formation + Delta-G solvation = 19.724576 kcal Electronic energy + Delta-G solvation = -22243.077053 eV Core-core repulsion = 18802.724822 eV Total energy + Delta-G solvation = -3440.352231 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.21587 -39.32006 -37.52662 -35.62008 -34.32589 -32.98097 -31.99457 -30.12890 -29.59708 -27.96061 -26.29309 -25.31113 -24.17857 -22.62430 -21.65552 -20.61296 -18.74705 -17.61541 -17.19106 -16.65949 -16.23304 -15.84968 -15.42373 -15.32286 -14.92158 -14.74712 -14.30265 -14.02617 -13.30158 -12.96735 -12.80151 -12.62988 -12.29902 -12.15012 -11.84953 -11.80953 -11.64878 -11.18495 -11.14196 -10.93992 -10.88967 -10.80340 -10.42609 -10.35992 -10.26073 -10.20308 -9.32356 -9.19252 -9.15111 -8.51910 -7.81464 -6.16088 -4.25532 1.63172 2.27282 2.55043 2.99573 3.21576 3.27920 3.28417 3.62321 4.16082 4.30787 4.39524 4.52148 4.65024 4.72046 4.84119 4.85691 5.02578 5.15438 5.28171 5.44331 5.52647 5.62382 5.81226 5.85096 5.98096 6.15767 6.16895 6.51230 6.65515 6.72310 6.94140 7.22392 7.37967 7.50011 7.59740 7.89026 8.06648 8.29516 8.60225 8.64000 8.81514 9.41099 10.89286 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.027697 B = 0.003632 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.714038 B = 7706.720223 C = 8028.497264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.197 3.803 3 H 0.111 0.889 4 O -0.557 6.557 5 C -0.066 4.066 6 C -0.039 4.039 7 N -0.273 5.273 8 C 0.093 3.907 9 C 0.491 3.509 10 O -0.521 6.521 11 N -0.586 5.586 12 C 0.077 3.923 13 C 0.260 3.740 14 H 0.064 0.936 15 C -0.147 4.147 16 C -0.532 4.532 17 H 0.060 0.940 18 C 0.066 3.934 19 N -0.885 5.885 20 Si 0.900 3.100 21 H -0.277 1.277 22 H -0.285 1.285 23 H -0.276 1.276 24 N -0.045 5.045 25 N -0.268 5.268 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.383 0.617 30 H 0.189 0.811 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.030 0.970 38 H 0.012 0.988 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.544 13.658 1.427 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.136 3.864 3 H 0.129 0.871 4 O -0.363 6.363 5 C -0.204 4.204 6 C -0.189 4.189 7 N -0.066 5.066 8 C -0.032 4.032 9 C 0.274 3.726 10 O -0.397 6.397 11 N -0.318 5.318 12 C -0.067 4.067 13 C 0.161 3.839 14 H 0.082 0.918 15 C -0.205 4.205 16 C -0.571 4.571 17 H 0.078 0.922 18 C -0.137 4.137 19 N -0.523 5.523 20 Si 0.728 3.272 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.202 1.202 24 N -0.025 5.025 25 N -0.136 5.136 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.231 0.769 30 H 0.206 0.794 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.113 0.887 37 H 0.050 0.950 38 H 0.032 0.968 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.559 12.157 1.636 17.555 hybrid contribution 1.317 1.019 -0.324 1.697 sum -11.242 13.176 1.312 17.370 Atomic orbital electron populations 1.22430 0.95225 1.03495 1.02433 1.19996 0.92963 0.94508 0.78973 0.87097 1.86544 1.77520 1.29929 1.42261 1.22739 1.02496 0.94310 1.00815 1.23348 1.04903 0.97692 0.92986 1.46872 1.30639 1.10259 1.18841 1.22119 0.93320 1.02288 0.85523 1.19958 0.82232 0.86433 0.83943 1.90791 1.70124 1.43220 1.35533 1.48251 1.34187 1.28586 1.20824 1.21713 1.04099 0.90625 0.90258 1.19006 0.85700 0.82641 0.96587 0.91813 1.22090 0.98734 1.01926 0.97763 1.21235 0.90040 0.93221 1.52582 0.92228 1.24897 0.99346 0.94789 0.94647 1.69863 1.31721 1.01399 1.49280 0.86528 0.83645 0.78453 0.78601 1.20213 1.21069 1.20163 1.78444 1.04561 1.10061 1.09407 1.75004 1.19684 1.13398 1.05545 0.91396 0.91449 0.91663 0.76856 0.79357 0.85211 0.85835 0.93264 0.92975 0.89399 0.88683 0.95039 0.96843 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 9.51 37.16 0.35 -1.19 16 2 C 0.20 2.05 4.09 -27.89 -0.11 1.94 16 3 H 0.11 0.91 8.12 -51.93 -0.42 0.48 16 4 O -0.56 -6.76 13.33 -35.23 -0.47 -7.23 16 5 C -0.07 -0.89 6.10 -82.78 -0.50 -1.39 16 6 C -0.04 -0.48 11.49 -17.05 -0.20 -0.68 16 7 N -0.27 -4.15 3.19 -62.44 -0.20 -4.35 16 8 C 0.09 1.19 5.49 -5.19 -0.03 1.17 16 9 C 0.49 9.50 7.69 -10.99 -0.08 9.41 16 10 O -0.52 -12.90 15.02 5.56 0.08 -12.82 16 11 N -0.59 -11.47 2.75 -175.27 -0.48 -11.95 16 12 C 0.08 1.08 9.24 59.85 0.55 1.64 16 13 C 0.26 6.41 2.63 -69.08 -0.18 6.22 16 14 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 15 C -0.15 -3.40 8.97 37.16 0.33 -3.06 16 16 C -0.53 -13.83 7.99 -34.44 -0.28 -14.10 16 17 H 0.06 1.49 7.33 -52.49 -0.38 1.11 16 18 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -24.67 11.32 55.43 0.63 -24.04 16 20 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 N -0.04 -0.83 12.15 60.35 0.73 -0.09 16 25 N -0.27 -4.57 12.40 33.29 0.41 -4.15 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.38 4.01 9.04 45.56 0.41 4.42 16 30 H 0.19 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.13 1.14 7.33 -51.93 -0.38 0.76 16 32 H 0.12 1.23 8.11 -51.93 -0.42 0.81 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.51 6.44 -51.93 -0.33 0.18 16 35 H 0.09 1.36 7.02 -51.93 -0.36 1.00 16 36 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 37 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 38 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 330.63 15.07 4.98 4.98 Total: -1.00 -35.20 330.63 -4.21 -39.41 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -4.64 Total: 3.16 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -0.24 Total: 1.62 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 1.09 Total: -44.59 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.39 Total: -20.04 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.20 -4.21 -39.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268599692.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.136 kcal (2) G-P(sol) polarization free energy of solvation -35.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds