Wall clock time and date at job start Tue Mar 31 2020 05:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47300 * 2 1 4 4 O 1.42903 * 109.47002 * 239.99934 * 2 1 3 5 5 C 1.50700 * 109.46638 * 120.00330 * 2 1 3 6 6 C 1.35345 * 126.75272 * 125.00347 * 5 2 1 7 7 N 1.35317 * 106.17619 * 179.97438 * 6 5 2 8 8 C 1.46507 * 125.86662 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.46501 * 125.00192 * 8 7 6 10 10 O 1.21274 * 120.00844 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99418 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00252 * 0.02562 * 11 9 8 13 13 C 1.46500 * 119.99819 * 180.02562 * 11 9 8 14 14 H 1.09002 * 109.47129 * 359.97438 * 13 11 9 15 15 C 1.52997 * 109.47473 * 120.00094 * 13 11 9 16 16 C 1.50708 * 109.47008 * 240.00262 * 13 11 9 17 17 H 1.08000 * 119.99723 * 359.97438 * 16 13 11 18 18 C 1.37873 * 119.99930 * 179.97438 * 16 13 11 19 19 N 1.31509 * 120.00195 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99968 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46809 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46948 * 120.00245 * 20 18 16 23 23 H 1.48497 * 109.47378 * 240.00531 * 20 18 16 24 24 N 1.28710 * 108.26145 * 0.26743 * 7 6 5 25 25 N 1.28637 * 110.17945 * 359.54939 * 24 7 6 26 26 H 1.08999 * 109.47720 * 300.00304 * 1 2 3 27 27 H 1.09001 * 109.47205 * 59.99700 * 1 2 3 28 28 H 1.08997 * 109.47454 * 179.97438 * 1 2 3 29 29 H 0.96694 * 113.99963 * 300.00529 * 4 2 1 30 30 H 1.08000 * 126.91121 * 359.97438 * 6 5 2 31 31 H 1.09000 * 109.46985 * 5.00311 * 8 7 6 32 32 H 1.09000 * 109.46723 * 245.00668 * 8 7 6 33 33 H 1.08994 * 109.47032 * 269.99966 * 12 11 9 34 34 H 1.08998 * 109.46624 * 29.99760 * 12 11 9 35 35 H 1.08998 * 109.46783 * 149.99505 * 12 11 9 36 36 H 1.09002 * 109.47153 * 59.99757 * 15 13 11 37 37 H 1.09001 * 109.46832 * 299.99948 * 15 13 11 38 38 H 1.09004 * 109.47261 * 179.97438 * 15 13 11 39 39 H 0.97006 * 120.00358 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0322 -0.7105 1.2305 6 6 2.8886 -1.7579 1.2680 7 7 3.0540 -2.0629 2.5759 8 6 3.8986 -3.1358 3.1070 9 6 4.8705 -2.5620 4.1056 10 8 4.8587 -1.3743 4.3500 11 7 5.7524 -3.3693 4.7278 12 6 5.7665 -4.8043 4.4330 13 6 6.6970 -2.8118 5.6990 14 1 6.5376 -1.7369 5.7850 15 6 6.4761 -3.4712 7.0618 16 6 8.1070 -3.0746 5.2363 17 1 8.2819 -3.6043 4.3116 18 6 9.1735 -2.6387 5.9936 19 7 8.9605 -1.9941 7.1199 20 14 10.9212 -2.9651 5.4205 21 1 10.8899 -3.7033 4.1323 22 1 11.6301 -1.6737 5.2333 23 1 11.6329 -3.7773 6.4398 24 7 2.3370 -1.2525 3.2729 25 7 1.7197 -0.4296 2.5005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.7209 -1.5952 -1.2329 30 1 3.3476 -2.2510 0.4239 31 1 4.4496 -3.6023 2.2904 32 1 3.2729 -3.8822 3.5963 33 1 5.0904 -5.3216 5.1136 34 1 5.4423 -4.9671 3.4052 35 1 6.7773 -5.1915 4.5609 36 1 6.6358 -4.5460 6.9755 37 1 5.4563 -3.2811 7.3964 38 1 7.1792 -3.0567 7.7843 39 1 9.7108 -1.6878 7.6529 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268599694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:36 Heat of formation + Delta-G solvation = 20.516541 kcal Electronic energy + Delta-G solvation = -22259.731637 eV Core-core repulsion = 18819.413748 eV Total energy + Delta-G solvation = -3440.317889 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.21828 -39.32000 -37.72864 -35.63052 -34.41503 -32.99189 -31.77622 -30.20441 -29.69881 -27.93157 -26.29075 -25.31385 -24.18628 -22.61097 -21.51928 -20.77160 -18.79912 -17.71601 -17.19869 -16.67817 -16.28007 -15.82764 -15.54240 -15.32672 -14.88359 -14.72559 -14.32326 -14.00323 -13.28973 -12.96502 -12.85699 -12.63525 -12.29638 -12.22158 -11.84263 -11.80531 -11.65569 -11.29967 -11.14911 -10.93539 -10.87482 -10.80147 -10.57684 -10.36721 -10.27120 -10.18234 -9.30757 -9.16099 -9.11407 -8.52611 -7.81181 -6.16464 -4.25715 1.64066 2.27678 2.58130 2.99692 3.19938 3.28237 3.30017 3.62570 4.01611 4.17260 4.30689 4.58976 4.70125 4.73105 4.85463 4.88505 5.02855 5.15281 5.25955 5.44560 5.53826 5.67048 5.81588 5.89311 5.93397 6.11295 6.17077 6.52069 6.65557 6.72432 6.94214 7.22502 7.31023 7.38048 7.59930 7.89147 8.06470 8.29479 8.61550 8.64271 8.81821 9.41071 10.88944 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.028375 B = 0.003611 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.547402 B = 7751.190064 C = 8020.235378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.195 3.805 3 H 0.116 0.884 4 O -0.555 6.555 5 C -0.065 4.065 6 C -0.043 4.043 7 N -0.273 5.273 8 C 0.093 3.907 9 C 0.491 3.509 10 O -0.521 6.521 11 N -0.586 5.586 12 C 0.077 3.923 13 C 0.259 3.741 14 H 0.064 0.936 15 C -0.147 4.147 16 C -0.531 4.531 17 H 0.061 0.939 18 C 0.066 3.934 19 N -0.885 5.885 20 Si 0.900 3.100 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.282 1.282 24 N -0.045 5.045 25 N -0.266 5.266 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.375 0.625 30 H 0.190 0.810 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.087 0.913 36 H 0.030 0.970 37 H 0.013 0.987 38 H 0.095 0.905 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.617 -6.156 -12.909 19.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.134 3.866 3 H 0.134 0.866 4 O -0.359 6.359 5 C -0.203 4.203 6 C -0.193 4.193 7 N -0.066 5.066 8 C -0.032 4.032 9 C 0.274 3.726 10 O -0.397 6.397 11 N -0.318 5.318 12 C -0.067 4.067 13 C 0.160 3.840 14 H 0.082 0.918 15 C -0.205 4.205 16 C -0.569 4.569 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.523 5.523 20 Si 0.728 3.272 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.208 1.208 24 N -0.025 5.025 25 N -0.135 5.135 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.222 0.778 30 H 0.207 0.793 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.050 0.950 37 H 0.032 0.968 38 H 0.113 0.887 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.631 -4.465 -11.285 17.517 hybrid contribution 1.333 -1.371 -1.060 2.187 sum -11.298 -5.837 -12.345 17.724 Atomic orbital electron populations 1.22402 0.94871 1.02725 1.03302 1.19918 0.93014 0.95209 0.78465 0.86643 1.86628 1.77449 1.29307 1.42529 1.22725 1.02568 0.99132 0.95854 1.23208 1.05336 1.02814 0.87951 1.46859 1.30659 1.23927 1.05168 1.22113 0.93305 0.87336 1.00469 1.19962 0.82235 0.87538 0.82827 1.90790 1.70136 1.14984 1.63784 1.48249 1.34198 1.07365 1.42026 1.21713 1.04098 0.82204 0.98675 1.19020 0.85730 0.95743 0.83526 0.91806 1.22088 0.98745 0.99151 1.00523 1.21312 0.90010 1.38024 1.07567 0.92118 1.24901 0.99371 0.94664 0.94803 1.69885 1.31468 1.37533 1.13369 0.86417 0.84090 0.78108 0.78631 1.19801 1.20838 1.20842 1.78450 1.04540 0.99403 1.20115 1.75041 1.19795 1.18580 1.00037 0.90531 0.91398 0.92440 0.77766 0.79314 0.85224 0.85847 0.93263 0.92978 0.89394 0.95038 0.96840 0.88679 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 9.51 37.16 0.35 -1.15 16 2 C 0.19 2.02 4.14 -27.88 -0.12 1.90 16 3 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16 4 O -0.56 -5.04 12.81 -35.23 -0.45 -5.49 16 5 C -0.06 -0.88 6.45 -82.78 -0.53 -1.41 16 6 C -0.04 -0.53 10.79 -17.05 -0.18 -0.72 16 7 N -0.27 -4.15 3.19 -62.44 -0.20 -4.35 16 8 C 0.09 1.20 5.49 -5.19 -0.03 1.17 16 9 C 0.49 9.51 7.69 -10.98 -0.08 9.43 16 10 O -0.52 -12.92 15.02 5.56 0.08 -12.84 16 11 N -0.59 -11.48 2.75 -175.26 -0.48 -11.96 16 12 C 0.08 1.08 9.24 59.85 0.55 1.64 16 13 C 0.26 6.39 2.64 -69.08 -0.18 6.20 16 14 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 15 C -0.15 -3.40 8.97 37.16 0.33 -3.06 16 16 C -0.53 -13.78 7.99 -34.44 -0.28 -14.06 16 17 H 0.06 1.53 7.33 -52.49 -0.38 1.14 16 18 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 19 N -0.88 -24.65 11.32 55.43 0.63 -24.02 16 20 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 N -0.04 -0.84 12.15 60.35 0.73 -0.11 16 25 N -0.27 -4.62 12.40 33.29 0.41 -4.21 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.38 1.94 8.86 45.56 0.40 2.35 16 30 H 0.19 1.54 7.94 -52.49 -0.42 1.12 16 31 H 0.13 1.15 7.33 -51.93 -0.38 0.76 16 32 H 0.12 1.23 8.11 -51.93 -0.42 0.81 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.52 6.44 -51.93 -0.33 0.18 16 35 H 0.09 1.36 7.02 -51.93 -0.36 1.00 16 36 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 37 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 39 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 329.53 15.07 4.97 4.97 Total: -1.00 -35.28 329.53 -4.23 -39.51 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -4.64 Total: 1.44 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -0.26 Total: 1.60 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 1.09 Total: -44.65 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.37 Total: -18.33 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.28 -4.23 -39.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268599694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.024 kcal (2) G-P(sol) polarization free energy of solvation -35.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds