Wall clock time and date at job start Tue Mar 31 2020 05:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47300 * 2 1 4 4 O 1.42903 * 109.47002 * 239.99934 * 2 1 3 5 5 C 1.50700 * 109.46638 * 120.00330 * 2 1 3 6 6 C 1.35345 * 126.75272 * 125.00347 * 5 2 1 7 7 N 1.35317 * 106.17619 * 179.97438 * 6 5 2 8 8 C 1.46507 * 125.86662 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.46501 * 125.00192 * 8 7 6 10 10 O 1.21274 * 120.00844 * 0.02562 * 9 8 7 11 11 N 1.34781 * 119.99418 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00252 * 0.02562 * 11 9 8 13 13 C 1.46500 * 119.99819 * 180.02562 * 11 9 8 14 14 H 1.09002 * 109.47129 * 359.97438 * 13 11 9 15 15 C 1.52997 * 109.47473 * 120.00094 * 13 11 9 16 16 C 1.50708 * 109.47008 * 240.00262 * 13 11 9 17 17 H 1.08000 * 119.99723 * 359.97438 * 16 13 11 18 18 C 1.37873 * 119.99930 * 179.97438 * 16 13 11 19 19 N 1.31509 * 120.00195 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99968 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.46809 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46948 * 120.00245 * 20 18 16 23 23 H 1.48497 * 109.47378 * 240.00531 * 20 18 16 24 24 N 1.28710 * 108.26145 * 0.26743 * 7 6 5 25 25 N 1.28637 * 110.17945 * 359.54939 * 24 7 6 26 26 H 1.08999 * 109.47720 * 300.00304 * 1 2 3 27 27 H 1.09001 * 109.47205 * 59.99700 * 1 2 3 28 28 H 1.08997 * 109.47454 * 179.97438 * 1 2 3 29 29 H 0.96694 * 113.99963 * 300.00529 * 4 2 1 30 30 H 1.08000 * 126.91121 * 359.97438 * 6 5 2 31 31 H 1.09000 * 109.46985 * 5.00311 * 8 7 6 32 32 H 1.09000 * 109.46723 * 245.00668 * 8 7 6 33 33 H 1.08994 * 109.47032 * 269.99966 * 12 11 9 34 34 H 1.08998 * 109.46624 * 29.99760 * 12 11 9 35 35 H 1.08998 * 109.46783 * 149.99505 * 12 11 9 36 36 H 1.09002 * 109.47153 * 59.99757 * 15 13 11 37 37 H 1.09001 * 109.46832 * 299.99948 * 15 13 11 38 38 H 1.09004 * 109.47261 * 179.97438 * 15 13 11 39 39 H 0.97006 * 120.00358 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0322 -0.7105 1.2305 6 6 2.8886 -1.7579 1.2680 7 7 3.0540 -2.0629 2.5759 8 6 3.8986 -3.1358 3.1070 9 6 4.8705 -2.5620 4.1056 10 8 4.8587 -1.3743 4.3500 11 7 5.7524 -3.3693 4.7278 12 6 5.7665 -4.8043 4.4330 13 6 6.6970 -2.8118 5.6990 14 1 6.5376 -1.7369 5.7850 15 6 6.4761 -3.4712 7.0618 16 6 8.1070 -3.0746 5.2363 17 1 8.2819 -3.6043 4.3116 18 6 9.1735 -2.6387 5.9936 19 7 8.9605 -1.9941 7.1199 20 14 10.9212 -2.9651 5.4205 21 1 10.8899 -3.7033 4.1323 22 1 11.6301 -1.6737 5.2333 23 1 11.6329 -3.7773 6.4398 24 7 2.3370 -1.2525 3.2729 25 7 1.7197 -0.4296 2.5005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.7209 -1.5952 -1.2329 30 1 3.3476 -2.2510 0.4239 31 1 4.4496 -3.6023 2.2904 32 1 3.2729 -3.8822 3.5963 33 1 5.0904 -5.3216 5.1136 34 1 5.4423 -4.9671 3.4052 35 1 6.7773 -5.1915 4.5609 36 1 6.6358 -4.5460 6.9755 37 1 5.4563 -3.2811 7.3964 38 1 7.1792 -3.0567 7.7843 39 1 9.7108 -1.6878 7.6529 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268599694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:35 Heat of formation + Delta-G solvation = -8.390778 kcal Electronic energy + Delta-G solvation = -22260.985152 eV Core-core repulsion = 18819.413748 eV Total energy + Delta-G solvation = -3441.571404 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.30286 -40.82535 -38.49152 -37.28563 -35.60089 -34.81213 -32.67917 -31.79289 -30.73495 -29.15538 -27.57742 -27.32785 -25.06824 -23.99737 -22.69559 -22.03700 -20.23702 -18.74546 -18.67571 -18.19395 -17.52460 -17.01202 -16.89886 -16.54889 -16.16986 -15.97649 -15.52061 -15.03808 -14.76056 -14.35542 -14.16480 -13.75835 -13.56560 -13.40535 -13.10117 -13.00239 -12.89338 -12.78384 -12.72579 -12.68272 -12.23671 -12.12865 -12.09869 -11.93489 -11.49748 -11.26528 -11.20623 -10.69501 -10.52346 -10.14952 -9.41603 -8.17511 -6.34698 0.58354 1.29113 1.40027 1.42214 1.49467 1.52832 1.59739 2.22038 2.43553 3.11552 3.17450 3.33334 3.50859 3.75419 3.86903 3.98159 4.09671 4.28101 4.41953 4.45263 4.70476 4.74232 4.77833 4.84450 4.86444 5.02368 5.06699 5.08324 5.15494 5.31267 5.43574 5.47883 5.58867 5.62928 5.98704 6.12109 6.68691 6.74204 6.81645 7.21440 7.39561 7.50757 8.87389 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.028375 B = 0.003611 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.547402 B = 7751.190064 C = 8020.235378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.202 3.798 3 H 0.106 0.894 4 O -0.558 6.558 5 C -0.076 4.076 6 C -0.026 4.026 7 N -0.278 5.278 8 C 0.103 3.897 9 C 0.480 3.520 10 O -0.591 6.591 11 N -0.592 5.592 12 C 0.068 3.932 13 C 0.263 3.737 14 H 0.001 0.999 15 C -0.132 4.132 16 C -0.536 4.536 17 H 0.069 0.931 18 C 0.011 3.989 19 N -0.920 5.920 20 Si 0.967 3.033 21 H -0.259 1.259 22 H -0.290 1.290 23 H -0.275 1.275 24 N -0.105 5.105 25 N -0.299 5.299 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.394 0.606 30 H 0.238 0.762 31 H 0.184 0.816 32 H 0.161 0.839 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.017 0.983 38 H 0.065 0.935 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.717 -9.124 -15.988 22.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.140 3.860 3 H 0.124 0.876 4 O -0.364 6.364 5 C -0.215 4.215 6 C -0.176 4.176 7 N -0.071 5.071 8 C -0.020 4.020 9 C 0.266 3.734 10 O -0.471 6.471 11 N -0.323 5.323 12 C -0.073 4.073 13 C 0.161 3.839 14 H 0.019 0.981 15 C -0.191 4.191 16 C -0.575 4.575 17 H 0.088 0.912 18 C -0.188 4.188 19 N -0.559 5.559 20 Si 0.792 3.208 21 H -0.182 1.182 22 H -0.216 1.216 23 H -0.201 1.201 24 N -0.084 5.084 25 N -0.166 5.166 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.085 0.915 29 H 0.244 0.756 30 H 0.255 0.745 31 H 0.202 0.798 32 H 0.178 0.822 33 H 0.090 0.910 34 H 0.124 0.876 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.036 0.964 38 H 0.083 0.917 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.758 -7.507 -14.373 20.633 hybrid contribution 1.341 -0.453 -0.165 1.425 sum -11.417 -7.960 -14.538 20.127 Atomic orbital electron populations 1.22327 0.93640 1.03343 1.03221 1.19843 0.93837 0.94557 0.77733 0.87635 1.86607 1.77554 1.30905 1.41348 1.23362 1.02853 0.99738 0.95569 1.23994 1.03833 1.01814 0.88004 1.47086 1.30220 1.23819 1.06008 1.22353 0.92376 0.86691 1.00601 1.21057 0.82488 0.86695 0.83155 1.90765 1.72068 1.18208 1.66089 1.48194 1.33265 1.09809 1.41021 1.22081 1.04172 0.78465 1.02616 1.18521 0.86857 0.92794 0.85714 0.98069 1.21872 0.98068 1.00009 0.99160 1.21626 0.90727 1.37490 1.07645 0.91243 1.25796 1.03586 0.94525 0.94901 1.70048 1.32490 1.38737 1.14662 0.85373 0.78980 0.77635 0.78816 1.18223 1.21626 1.20101 1.78410 1.06902 1.01414 1.21649 1.74959 1.20639 1.19153 1.01850 0.92217 0.89801 0.91485 0.75580 0.74525 0.79838 0.82184 0.91004 0.87604 0.90846 0.92844 0.96405 0.91664 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 9.51 71.98 0.68 -1.93 16 2 C 0.20 3.84 4.14 29.85 0.12 3.96 16 3 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 4 O -0.56 -8.29 12.81 -148.98 -1.91 -10.19 16 5 C -0.08 -1.96 6.45 41.60 0.27 -1.69 16 6 C -0.03 -0.56 10.79 83.49 0.90 0.34 16 7 N -0.28 -7.86 3.19 -351.46 -1.12 -8.98 16 8 C 0.10 2.27 5.49 85.63 0.47 2.74 16 9 C 0.48 18.20 7.69 87.66 0.67 18.88 16 10 O -0.59 -30.57 15.02 -3.01 -0.05 -30.62 16 11 N -0.59 -22.52 2.75 -826.80 -2.28 -24.80 16 12 C 0.07 1.66 9.24 127.77 1.18 2.84 16 13 C 0.26 13.31 2.64 44.25 0.12 13.43 16 14 H 0.00 0.08 6.90 -2.39 -0.02 0.07 16 15 C -0.13 -6.27 8.97 71.98 0.65 -5.62 16 16 C -0.54 -28.01 7.99 25.60 0.20 -27.80 16 17 H 0.07 3.41 7.33 -2.91 -0.02 3.39 16 18 C 0.01 0.61 5.30 84.65 0.45 1.06 16 19 N -0.92 -53.09 11.32 21.44 0.24 -52.85 16 20 Si 0.97 42.01 29.54 68.60 2.03 44.04 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 22 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 24 N -0.10 -3.94 12.15 37.02 0.45 -3.49 16 25 N -0.30 -10.51 12.40 -48.60 -0.60 -11.11 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.39 2.41 8.86 -74.06 -0.66 1.75 16 30 H 0.24 2.47 7.94 -2.91 -0.02 2.45 16 31 H 0.18 1.99 7.33 -2.39 -0.02 1.97 16 32 H 0.16 2.38 8.11 -2.39 -0.02 2.36 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.11 1.42 6.44 -2.39 -0.02 1.41 16 35 H 0.07 2.04 7.02 -2.39 -0.02 2.02 16 36 H 0.05 2.22 7.67 -2.39 -0.02 2.21 16 37 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 3.49 6.07 -2.38 -0.01 3.47 16 39 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 Total: -1.00 -85.37 329.53 2.90 -82.48 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.41 Total: 9.33 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 5.72 Total: 6.19 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -3.31 Total: -101.22 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -1.95 Total: -40.81 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -85.37 2.90 -82.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268599694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.087 kcal (2) G-P(sol) polarization free energy of solvation -85.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds