Wall clock time and date at job start Tue Mar 31 2020 06:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31779 * 122.75588 * 2 1 4 4 C 1.29025 * 117.12937 * 180.02562 * 3 2 1 5 5 C 1.50693 * 124.91866 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47332 * 299.97884 * 5 4 3 7 7 C 1.53001 * 109.47016 * 59.97558 * 5 4 3 8 8 S 1.70982 * 110.16403 * 359.72557 * 4 3 2 9 9 C 1.33647 * 122.74446 * 180.02562 * 2 1 3 10 10 C 1.50695 * 126.03776 * 359.97438 * 9 2 1 11 11 H 1.08994 * 109.47229 * 344.99769 * 10 9 2 12 12 C 1.52993 * 109.47261 * 105.00206 * 10 9 2 13 13 N 1.46904 * 109.46760 * 225.00297 * 10 9 2 14 14 C 1.46899 * 111.00029 * 155.00092 * 13 10 9 15 15 C 1.52997 * 109.47254 * 179.97438 * 14 13 10 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00362 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99850 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47052 * 89.99717 * 20 18 16 22 22 H 1.48495 * 109.47307 * 209.99656 * 20 18 16 23 23 H 1.48500 * 109.47143 * 330.00164 * 20 18 16 24 24 H 1.09004 * 109.46711 * 270.00159 * 1 2 3 25 25 H 1.09003 * 109.46496 * 29.99464 * 1 2 3 26 26 H 1.08993 * 109.47297 * 149.99535 * 1 2 3 27 27 H 1.09000 * 109.47427 * 179.97438 * 5 4 3 28 28 H 1.08997 * 109.47191 * 59.99884 * 6 5 4 29 29 H 1.09000 * 109.47248 * 180.02562 * 6 5 4 30 30 H 1.09000 * 109.47149 * 299.99568 * 6 5 4 31 31 H 1.09006 * 109.47105 * 60.00220 * 7 5 4 32 32 H 1.09007 * 109.47228 * 179.97438 * 7 5 4 33 33 H 1.08997 * 109.47313 * 299.99997 * 7 5 4 34 34 H 1.09004 * 109.47538 * 59.99756 * 12 10 9 35 35 H 1.09001 * 109.46997 * 179.97438 * 12 10 9 36 36 H 1.08999 * 109.47404 * 299.99809 * 12 10 9 37 37 H 1.00908 * 110.99583 * 278.95004 * 13 10 9 38 38 H 1.09002 * 109.47043 * 299.99792 * 14 13 10 39 39 H 1.09001 * 109.47354 * 59.99854 * 14 13 10 40 40 H 1.09002 * 109.47153 * 300.00004 * 15 14 13 41 41 H 1.08998 * 109.47533 * 59.99633 * 15 14 13 42 42 H 0.96994 * 119.99814 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.1082 0.0000 4 6 3.5041 0.9817 -0.0005 5 6 4.4836 2.1268 -0.0012 6 6 4.2670 2.9827 -1.2507 7 6 4.2672 2.9838 1.2477 8 16 3.9332 -0.6733 0.0066 9 6 2.2299 -1.1241 -0.0005 10 6 1.6845 -2.5289 -0.0006 11 1 0.6278 -2.5084 0.2658 12 6 1.8475 -3.1392 -1.3940 13 7 2.4206 -3.3399 0.9784 14 6 1.6053 -4.4687 1.4463 15 6 2.4040 -5.2885 2.4616 16 6 1.5673 -6.4461 2.9421 17 1 0.5662 -6.5837 2.5612 18 6 2.0803 -7.3303 3.8674 19 7 1.3503 -8.3409 4.2864 20 14 3.8128 -7.0938 4.5248 21 1 3.7696 -6.2365 5.7366 22 1 4.3946 -8.4147 4.8734 23 1 4.6513 -6.4417 3.4870 24 1 -0.3633 0.0000 1.0277 25 1 -0.3632 0.8901 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 5.5008 1.7350 -0.0010 28 1 3.2499 3.3746 -1.2508 29 1 4.9758 3.8107 -1.2514 30 1 4.4212 2.3722 -2.1405 31 1 4.4216 2.3741 2.1380 32 1 4.9761 3.8119 1.2475 33 1 3.2501 3.3758 1.2476 34 1 2.9042 -3.1597 -1.6605 35 1 1.4534 -4.1554 -1.3939 36 1 1.3013 -2.5374 -2.1204 37 1 3.2972 -3.6613 0.5956 38 1 0.6978 -4.0908 1.9173 39 1 1.3388 -5.1004 0.5989 40 1 3.3112 -5.6665 1.9902 41 1 2.6709 -4.6572 3.3091 42 1 1.7111 -8.9627 4.9375 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273254257.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:49 Heat of formation + Delta-G solvation = 14.967617 kcal Electronic energy + Delta-G solvation = -19713.105635 eV Core-core repulsion = 16818.840341 eV Total energy + Delta-G solvation = -2894.265294 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.05397 -37.27106 -35.59996 -33.39071 -31.80945 -30.56020 -28.36978 -27.39412 -27.21045 -25.18958 -24.13617 -21.89768 -20.97457 -20.55707 -18.42209 -17.78172 -16.76102 -15.76162 -15.31189 -14.88827 -14.68429 -14.46493 -14.01569 -13.93846 -13.50787 -13.41025 -12.92279 -12.84563 -12.56381 -12.52409 -12.47692 -12.17120 -12.07199 -11.76781 -11.40507 -11.38810 -11.34240 -11.24885 -11.05891 -10.88509 -10.26925 -9.87851 -9.82168 -9.49751 -9.25784 -9.09554 -8.55850 -8.51973 -8.04670 -6.06167 -4.04796 0.78879 1.41940 1.87221 2.81817 3.31947 3.38806 3.43263 3.96524 4.44798 4.47912 4.62553 4.77741 4.85199 4.87670 5.06175 5.22040 5.27760 5.28720 5.31675 5.40393 5.53185 5.58318 5.61509 5.65494 5.71447 5.74957 5.82972 5.89669 5.99014 6.04125 6.06204 6.13879 6.24103 6.34340 6.72118 7.05945 7.33773 7.51232 7.66256 7.81383 7.83587 8.50584 8.97547 9.56172 11.07106 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.023352 B = 0.003654 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.730918 B = 7661.213834 C = 8248.872253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.053 3.947 3 N -0.464 5.464 4 C 0.035 3.965 5 C -0.013 4.013 6 C -0.138 4.138 7 C -0.139 4.139 8 S 0.132 5.868 9 C -0.188 4.188 10 C 0.155 3.845 11 H 0.098 0.902 12 C -0.178 4.178 13 N -0.687 5.687 14 C 0.075 3.925 15 C -0.010 4.010 16 C -0.522 4.522 17 H 0.071 0.929 18 C 0.067 3.933 19 N -0.903 5.903 20 Si 0.882 3.118 21 H -0.276 1.276 22 H -0.289 1.289 23 H -0.265 1.265 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.336 0.664 38 H 0.066 0.934 39 H 0.026 0.974 40 H 0.013 0.987 41 H 0.021 0.979 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.326 21.202 -12.389 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.079 4.079 3 N -0.178 5.178 4 C -0.243 4.243 5 C -0.035 4.035 6 C -0.197 4.197 7 C -0.198 4.198 8 S 0.390 5.610 9 C -0.310 4.310 10 C 0.043 3.957 11 H 0.116 0.884 12 C -0.237 4.237 13 N -0.317 5.317 14 C -0.053 4.053 15 C -0.047 4.047 16 C -0.560 4.560 17 H 0.089 0.911 18 C -0.134 4.134 19 N -0.542 5.542 20 Si 0.709 3.291 21 H -0.202 1.202 22 H -0.215 1.215 23 H -0.190 1.190 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.104 0.896 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.154 0.846 38 H 0.085 0.915 39 H 0.044 0.956 40 H 0.032 0.968 41 H 0.039 0.961 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.901 21.402 -11.715 25.102 hybrid contribution 0.005 -0.679 -0.260 0.727 sum 5.905 20.723 -11.975 24.652 Atomic orbital electron populations 1.20325 0.87438 1.02826 1.02947 1.20055 0.97945 0.86076 1.03816 1.65976 1.04497 1.31478 1.15879 1.26842 0.94358 0.98012 1.05057 1.19758 0.95027 0.91261 0.97501 1.21784 1.02824 0.99112 0.95948 1.21795 1.02800 0.99125 0.96082 1.83918 1.07590 1.01749 1.67724 1.25769 0.94772 1.00108 1.10334 1.19901 0.98351 0.86421 0.91069 0.88411 1.22524 1.02275 1.01647 0.97274 1.60736 1.07077 1.25266 1.38646 1.22005 0.96585 0.89201 0.97517 1.19541 0.95842 0.94913 0.94435 1.21048 1.01956 1.08660 1.24342 0.91077 1.25003 0.97590 0.94842 0.95948 1.69912 1.37206 1.15181 1.31937 0.86742 0.85240 0.77320 0.79759 1.20224 1.21473 1.18992 0.90704 0.90980 0.90902 0.89610 0.91553 0.91878 0.92687 0.92463 0.91886 0.91546 0.92425 0.91366 0.92061 0.84580 0.91545 0.95589 0.96847 0.96082 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 9.81 36.01 0.35 -0.49 16 2 C 0.05 0.72 6.74 -84.22 -0.57 0.15 16 3 N -0.46 -6.37 10.51 -8.06 -0.08 -6.45 16 4 C 0.04 0.43 5.91 -13.46 -0.08 0.35 16 5 C -0.01 -0.12 3.35 -91.78 -0.31 -0.43 16 6 C -0.14 -1.11 9.17 37.16 0.34 -0.77 16 7 C -0.14 -1.22 9.17 37.16 0.34 -0.88 16 8 S 0.13 1.66 23.05 -107.50 -2.48 -0.81 16 9 C -0.19 -2.59 5.48 -35.92 -0.20 -2.78 16 10 C 0.16 2.15 2.75 -68.87 -0.19 1.96 16 11 H 0.10 1.35 6.43 -51.93 -0.33 1.01 16 12 C -0.18 -2.13 9.14 37.15 0.34 -1.80 16 13 N -0.69 -11.40 6.13 -107.96 -0.66 -12.06 16 14 C 0.07 1.47 5.42 -3.83 -0.02 1.44 16 15 C -0.01 -0.23 4.30 -27.89 -0.12 -0.35 16 16 C -0.52 -14.85 9.66 -34.44 -0.33 -15.18 16 17 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -27.93 13.96 55.43 0.77 -27.15 16 20 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.72 7.03 -51.93 -0.37 0.35 16 27 H 0.09 0.68 8.12 -51.93 -0.42 0.25 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 35 H 0.07 0.84 7.45 -51.93 -0.39 0.46 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.34 5.36 8.47 -39.29 -0.33 5.03 16 38 H 0.07 1.33 8.06 -51.93 -0.42 0.91 16 39 H 0.03 0.50 7.44 -51.93 -0.39 0.11 16 40 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 41 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 353.73 15.07 5.33 5.33 Total: -1.00 -31.38 353.73 -9.55 -40.93 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.23 Total: -0.16 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -0.54 Total: -16.88 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.03 Total: -45.67 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.48 Total: -0.81 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.38 -9.55 -40.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273254257.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.902 kcal (2) G-P(sol) polarization free energy of solvation -31.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds