Wall clock time and date at job start Tue Mar 31 2020 05:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47337 * 2 1 4 4 H 1.09002 * 109.46821 * 304.99690 * 3 2 1 5 5 C 1.50698 * 109.47254 * 185.00106 * 3 2 1 6 6 H 1.08001 * 119.99810 * 239.99654 * 5 3 2 7 7 C 1.37872 * 120.00051 * 59.99844 * 5 3 2 8 8 N 1.31514 * 120.00244 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 120.00083 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47231 * 89.99406 * 9 7 5 11 11 H 1.48500 * 109.47013 * 209.99751 * 9 7 5 12 12 H 1.48498 * 109.46665 * 329.99226 * 9 7 5 13 13 N 1.46496 * 109.47519 * 64.99486 * 3 2 1 14 14 C 1.34777 * 120.00266 * 275.00721 * 13 3 2 15 15 O 1.21274 * 120.00135 * 0.27234 * 14 13 3 16 16 C 1.50706 * 119.99766 * 179.97438 * 14 13 3 17 17 N 1.46500 * 109.46949 * 179.97438 * 16 14 13 18 18 C 1.35309 * 125.86790 * 124.99773 * 17 16 14 19 19 C 1.35350 * 106.17637 * 180.02562 * 18 17 16 20 20 C 1.50698 * 126.75441 * 179.97438 * 19 18 17 21 21 H 1.09005 * 109.47033 * 245.00237 * 20 19 18 22 22 C 1.53005 * 109.47399 * 125.00314 * 20 19 18 23 23 O 1.42898 * 109.47237 * 5.00168 * 20 19 18 24 24 N 1.33776 * 106.49838 * 0.02562 * 19 18 17 25 25 N 1.28643 * 108.88147 * 359.73302 * 24 19 18 26 26 H 1.08994 * 109.47573 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47130 * 300.00509 * 1 2 3 28 28 H 1.09000 * 109.47158 * 60.00214 * 1 2 3 29 29 H 1.08994 * 109.47163 * 239.99474 * 2 1 3 30 30 H 1.09004 * 109.46933 * 119.99331 * 2 1 3 31 31 H 0.97005 * 120.00318 * 180.02562 * 8 7 5 32 32 H 0.96999 * 119.99691 * 94.99706 * 13 3 2 33 33 H 1.09000 * 109.47161 * 299.99737 * 16 14 13 34 34 H 1.09001 * 109.46740 * 59.99879 * 16 14 13 35 35 H 1.07994 * 126.91546 * 359.97438 * 18 17 16 36 36 H 1.09002 * 109.46828 * 59.99524 * 22 20 19 37 37 H 1.08992 * 109.47330 * 180.02562 * 22 20 19 38 38 H 1.09000 * 109.46706 * 300.00333 * 22 20 19 39 39 H 0.96702 * 113.99910 * 59.99917 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8783 -1.2279 8 7 3.4062 0.3365 -2.1728 9 14 6.0050 0.8799 -1.3811 10 1 6.5539 -0.3520 -0.7597 11 1 6.3835 0.9212 -2.8165 12 1 6.5575 2.0719 -0.6891 13 7 1.6524 2.0976 1.2517 14 6 0.4351 2.6645 1.3668 15 8 -0.3413 2.6280 0.4359 16 6 0.0363 3.3379 2.6547 17 7 -1.3222 3.8711 2.5266 18 6 -2.3613 3.5998 3.3497 19 6 -3.4167 4.2961 2.8668 20 6 -4.8123 4.3273 3.4344 21 1 -5.5050 3.8813 2.7206 22 6 -5.2210 5.7769 3.7040 23 8 -4.8461 3.5877 4.6566 24 7 -2.9776 4.9503 1.7856 25 7 -1.7313 4.6815 1.6141 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8293 -0.0620 -2.9495 32 1 2.2719 2.1232 1.9977 33 1 0.0673 2.6132 3.4684 34 1 0.7277 4.1531 2.8676 35 1 -2.3509 2.9564 4.2170 36 1 -5.1952 6.3410 2.7717 37 1 -6.2302 5.7994 4.1150 38 1 -4.5284 6.2228 4.4178 39 1 -4.2526 3.9291 5.3395 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273837507.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:48 Heat of formation + Delta-G solvation = 8.405763 kcal Electronic energy + Delta-G solvation = -22230.235518 eV Core-core repulsion = 18789.392466 eV Total energy + Delta-G solvation = -3440.843052 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.23416 -39.26301 -37.74814 -35.39963 -34.31522 -32.56547 -31.80241 -31.14727 -29.93812 -28.53125 -26.77714 -24.20588 -23.28038 -22.20439 -21.42341 -20.36072 -19.53714 -18.03280 -17.45997 -16.61386 -16.35151 -15.72824 -15.38871 -15.31724 -14.92609 -14.74274 -14.34148 -14.00584 -13.35962 -13.13803 -12.81947 -12.74946 -12.25308 -12.04021 -11.82357 -11.55281 -11.34852 -11.31319 -11.08178 -10.91684 -10.87185 -10.59924 -10.43353 -10.30386 -10.18876 -9.74557 -9.22166 -9.14328 -9.13754 -8.59871 -8.02186 -6.20274 -4.30839 1.62299 2.25874 2.56385 3.02250 3.19021 3.26538 3.28097 3.73078 3.99442 4.16286 4.28085 4.60567 4.68422 4.86090 4.86910 5.00828 5.10464 5.15151 5.24184 5.52258 5.66451 5.87748 5.91599 6.09326 6.28848 6.33138 6.52081 6.54659 6.90752 7.08049 7.20442 7.27797 7.28664 7.49445 7.59842 7.78314 8.07215 8.42605 8.60262 8.64080 8.88805 9.36433 10.84997 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.041060 B = 0.003340 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.766162 B = 8381.391743 C = 8558.573928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.051 0.949 5 C -0.537 4.537 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.701 5.701 14 C 0.488 3.512 15 O -0.516 6.516 16 C 0.089 3.911 17 N -0.272 5.272 18 C -0.044 4.044 19 C -0.065 4.065 20 C 0.195 3.805 21 H 0.116 0.884 22 C -0.175 4.175 23 O -0.555 6.555 24 N -0.267 5.267 25 N -0.043 5.043 26 H 0.024 0.976 27 H 0.034 0.966 28 H 0.050 0.950 29 H 0.101 0.899 30 H 0.032 0.968 31 H 0.266 0.734 32 H 0.390 0.610 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.189 0.811 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.191 5.517 15.683 18.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.069 0.931 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.350 5.350 14 C 0.269 3.731 15 O -0.392 6.392 16 C -0.037 4.037 17 N -0.065 5.065 18 C -0.194 4.194 19 C -0.203 4.203 20 C 0.134 3.866 21 H 0.133 0.867 22 C -0.233 4.233 23 O -0.359 6.359 24 N -0.135 5.135 25 N -0.023 5.023 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.119 0.881 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.223 0.777 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.206 0.794 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -9.744 5.813 13.204 17.409 hybrid contribution 1.731 -0.490 1.491 2.336 sum -8.014 5.323 14.694 17.563 Atomic orbital electron populations 1.21832 0.98368 0.98153 1.01031 1.21950 0.92491 0.99711 1.02476 1.18855 0.94407 0.89130 0.80484 0.93101 1.21184 0.90438 1.39454 1.06493 0.91983 1.24890 0.98736 0.94708 0.95301 1.69887 1.35258 1.37257 1.09344 0.86432 0.84650 0.78440 0.77497 1.20517 1.21013 1.19829 1.46434 1.13824 1.55684 1.19046 1.19958 0.84036 0.80696 0.88398 1.90811 1.50905 1.58196 1.39286 1.22089 0.79523 1.01221 1.00817 1.46814 1.10366 1.30719 1.18583 1.23194 0.87618 1.07007 1.01605 1.22726 0.98364 1.01707 0.97472 1.19918 0.88840 0.92478 0.85377 0.86668 1.22404 1.01756 0.95891 1.03273 1.86626 1.67344 1.57952 1.24017 1.75057 1.02304 1.21169 1.14948 1.78478 1.06588 1.07215 1.10027 0.95696 0.94737 0.93107 0.88092 0.94921 0.92422 0.77744 0.85310 0.85765 0.79369 0.90523 0.91392 0.92437 0.77755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.51 37.16 0.32 -2.67 16 2 C -0.13 -2.97 5.45 -26.73 -0.15 -3.12 16 3 C 0.27 6.50 2.24 -69.09 -0.15 6.34 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 5 C -0.54 -13.52 8.73 -34.44 -0.30 -13.82 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.13 11.29 55.43 0.63 -23.50 16 9 Si 0.90 20.01 29.54 -169.99 -5.02 14.98 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 N -0.70 -12.92 5.02 -54.93 -0.28 -13.19 16 14 C 0.49 8.70 6.42 -10.98 -0.07 8.63 16 15 O -0.52 -11.77 12.81 5.56 0.07 -11.69 16 16 C 0.09 1.06 6.94 -5.19 -0.04 1.02 16 17 N -0.27 -3.92 3.19 -62.44 -0.20 -4.12 16 18 C -0.04 -0.52 10.79 -17.05 -0.18 -0.70 16 19 C -0.06 -0.85 6.45 -82.78 -0.53 -1.38 16 20 C 0.19 1.95 4.14 -27.88 -0.12 1.84 16 21 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 22 C -0.18 -1.47 9.51 37.16 0.35 -1.12 16 23 O -0.56 -4.84 12.81 -35.23 -0.45 -5.29 16 24 N -0.27 -4.52 12.40 33.29 0.41 -4.11 16 25 N -0.04 -0.78 12.15 60.35 0.73 -0.05 16 26 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.03 0.72 5.64 -51.93 -0.29 0.42 16 28 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16 29 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.39 5.82 8.54 -40.82 -0.35 5.47 16 33 H 0.13 0.96 8.07 -51.93 -0.42 0.54 16 34 H 0.12 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.19 1.42 7.94 -52.49 -0.42 1.01 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.38 1.83 8.86 45.56 0.40 2.23 16 LS Contribution 328.47 15.07 4.95 4.95 Total: -1.00 -34.01 328.47 -4.80 -38.82 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -4.68 Total: 6.52 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -0.97 Total: -3.32 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 1.30 Total: -44.97 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.38 Total: -16.99 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.01 -4.80 -38.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273837507.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.223 kcal (2) G-P(sol) polarization free energy of solvation -34.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds