Wall clock time and date at job start Tue Mar 31 2020 05:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48493 * 109.47326 * 90.00142 * 9 7 5 11 11 H 1.48506 * 109.46545 * 209.99892 * 9 7 5 12 12 H 1.48498 * 109.47210 * 329.99603 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21285 * 119.99653 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00176 * 180.02562 * 14 13 3 17 17 N 1.46501 * 109.47218 * 179.97438 * 16 14 13 18 18 C 1.35305 * 125.87264 * 124.99577 * 17 16 14 19 19 C 1.35351 * 106.17755 * 179.97438 * 18 17 16 20 20 C 1.50700 * 126.75154 * 179.97438 * 19 18 17 21 21 H 1.09009 * 109.47035 * 245.00510 * 20 19 18 22 22 C 1.52996 * 109.47105 * 125.00347 * 20 19 18 23 23 O 1.42903 * 109.47161 * 5.00212 * 20 19 18 24 24 N 1.33768 * 106.49443 * 0.02562 * 19 18 17 25 25 N 1.28629 * 108.88743 * 359.73441 * 24 19 18 26 26 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 27 27 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 28 28 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 30 30 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 31 31 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 32 32 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 33 33 H 1.09003 * 109.46719 * 299.99416 * 16 14 13 34 34 H 1.08991 * 109.47126 * 59.99074 * 16 14 13 35 35 H 1.07999 * 126.90963 * 359.97438 * 18 17 16 36 36 H 1.09002 * 109.46972 * 59.99930 * 22 20 19 37 37 H 1.09005 * 109.47245 * 179.97438 * 22 20 19 38 38 H 1.08998 * 109.46861 * 299.99935 * 22 20 19 39 39 H 0.96698 * 114.00078 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.4486 2.1066 2.0771 11 1 6.4366 -0.3171 2.1526 12 1 6.6108 0.8288 0.0225 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3396 2.6320 -0.4343 16 6 0.0361 3.3377 -2.6548 17 7 -1.3228 3.8700 -2.5271 18 6 -1.6957 5.1524 -2.7442 19 6 -3.0286 5.2015 -2.5145 20 6 -3.9181 6.4133 -2.6222 21 1 -4.3133 6.6626 -1.6373 22 6 -5.0764 6.1126 -3.5754 23 8 -3.1615 7.5164 -3.1249 24 7 -3.4010 3.9632 -2.1722 25 7 -2.3682 3.1968 -2.1941 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 3.8292 -0.0558 2.9526 32 1 2.2719 2.1232 -1.9978 33 1 0.7275 4.1530 -2.8679 34 1 0.0672 2.6131 -3.4684 35 1 -1.0579 5.9719 -3.0410 36 1 -5.6535 5.2712 -3.1919 37 1 -5.7200 6.9890 -3.6529 38 1 -4.6812 5.8634 -4.5602 39 1 -3.6715 8.3324 -3.2200 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273837509.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:52 Heat of formation + Delta-G solvation = 10.714375 kcal Electronic energy + Delta-G solvation = -22191.737851 eV Core-core repulsion = 18750.994908 eV Total energy + Delta-G solvation = -3440.742943 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.14770 -39.21126 -37.64128 -35.36081 -34.27533 -32.54237 -31.91458 -31.07892 -29.81473 -28.46522 -26.73971 -24.23490 -23.22860 -22.14382 -21.23144 -20.15259 -19.48607 -17.75580 -17.33147 -17.13295 -16.23871 -15.73367 -15.26110 -15.18805 -14.86390 -14.60856 -14.53659 -14.10962 -13.23375 -12.96892 -12.84365 -12.71516 -12.28115 -11.93334 -11.75774 -11.51371 -11.30434 -11.27534 -11.03408 -10.89757 -10.72830 -10.62332 -10.38563 -10.24339 -10.10564 -9.66402 -9.16455 -9.11610 -9.00690 -8.56808 -7.98716 -6.18747 -4.29207 1.73264 2.33336 2.63067 3.06705 3.20069 3.27069 3.28353 3.69819 3.78269 4.28841 4.44002 4.73740 4.79839 4.87605 4.92484 5.04761 5.12509 5.19824 5.40235 5.50576 5.63761 5.87803 5.98662 6.14758 6.38166 6.44644 6.61355 6.63899 7.00130 7.15643 7.25214 7.34359 7.35880 7.54165 7.63013 7.81239 8.10579 8.46036 8.65953 8.67498 8.92030 9.37900 10.86522 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.035146 B = 0.003414 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.494435 B = 8199.952609 C = 8625.383003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.273 3.727 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.701 5.701 14 C 0.488 3.512 15 O -0.517 6.517 16 C 0.090 3.910 17 N -0.276 5.276 18 C -0.027 4.027 19 C -0.031 4.031 20 C 0.196 3.804 21 H 0.073 0.927 22 C -0.176 4.176 23 O -0.566 6.566 24 N -0.268 5.268 25 N -0.045 5.045 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.024 0.976 29 H 0.032 0.968 30 H 0.099 0.901 31 H 0.265 0.735 32 H 0.390 0.610 33 H 0.130 0.870 34 H 0.123 0.877 35 H 0.191 0.809 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.708 11.210 -12.918 19.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.172 3.828 4 H 0.068 0.932 5 C -0.576 4.576 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.517 5.517 9 Si 0.730 3.270 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.350 5.350 14 C 0.269 3.731 15 O -0.393 6.393 16 C -0.036 4.036 17 N -0.069 5.069 18 C -0.177 4.177 19 C -0.169 4.169 20 C 0.135 3.865 21 H 0.091 0.909 22 C -0.234 4.234 23 O -0.372 6.372 24 N -0.136 5.136 25 N -0.024 5.024 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.223 0.777 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.208 0.792 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -9.276 9.225 -11.618 17.497 hybrid contribution 1.543 1.351 -0.567 2.127 sum -7.733 10.576 -12.185 17.892 Atomic orbital electron populations 1.21835 0.98032 0.98267 1.01346 1.21944 0.92765 0.99567 1.02365 1.18847 0.94315 0.89254 0.80421 0.93229 1.21193 0.90479 1.39561 1.06354 0.92004 1.24896 0.98703 0.94695 0.95365 1.69898 1.35232 1.37407 1.09170 0.86437 0.84679 0.77704 0.78213 1.20557 1.21022 1.19825 1.46438 1.13816 1.55759 1.19027 1.19974 0.83847 0.80842 0.88402 1.90809 1.50698 1.58469 1.39285 1.22071 0.78699 1.02148 1.00666 1.46804 1.09070 1.07273 1.43741 1.23265 0.97405 0.88310 1.08716 1.21408 0.92755 0.94858 1.07851 1.19472 0.87957 0.82312 0.96756 0.90897 1.22415 0.97904 1.02725 1.00388 1.86412 1.41094 1.21484 1.88245 1.75017 1.20625 1.00433 1.17537 1.78456 0.88206 1.20326 1.15455 0.93223 0.94154 0.95721 0.94932 0.88242 0.92446 0.77739 0.85227 0.85882 0.79174 0.90562 0.92014 0.91885 0.76696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.51 37.16 0.32 -2.79 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.58 2.24 -69.08 -0.15 6.42 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.54 -13.60 8.73 -34.44 -0.30 -13.90 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.25 11.31 55.43 0.63 -23.63 16 9 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 13 N -0.70 -13.18 5.02 -54.93 -0.28 -13.45 16 14 C 0.49 8.91 6.41 -10.99 -0.07 8.84 16 15 O -0.52 -11.94 12.82 5.55 0.07 -11.87 16 16 C 0.09 1.13 6.94 -5.19 -0.04 1.10 16 17 N -0.28 -4.25 3.19 -62.45 -0.20 -4.45 16 18 C -0.03 -0.36 10.92 -17.05 -0.19 -0.55 16 19 C -0.03 -0.45 6.47 -82.78 -0.54 -0.99 16 20 C 0.20 2.02 4.13 -27.88 -0.12 1.90 16 21 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 22 C -0.18 -1.52 9.51 37.16 0.35 -1.17 16 23 O -0.57 -4.91 12.71 -35.23 -0.45 -5.35 16 24 N -0.27 -4.72 12.40 33.29 0.41 -4.30 16 25 N -0.04 -0.83 12.14 60.35 0.73 -0.10 16 26 H 0.05 1.21 7.85 -51.93 -0.41 0.81 16 27 H 0.04 0.89 5.64 -51.93 -0.29 0.60 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 2.64 5.96 -51.93 -0.31 2.33 16 31 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.39 5.97 8.54 -40.82 -0.35 5.62 16 33 H 0.13 1.10 8.07 -51.93 -0.42 0.68 16 34 H 0.12 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.19 1.96 7.94 -52.49 -0.42 1.55 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.39 1.45 9.08 45.56 0.41 1.86 16 LS Contribution 328.76 15.07 4.95 4.95 Total: -1.00 -34.28 328.76 -4.79 -39.07 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -4.67 Total: 6.74 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -0.97 Total: -2.66 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 1.30 Total: -45.94 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.38 Total: -17.23 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.28 -4.79 -39.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273837509.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.788 kcal (2) G-P(sol) polarization free energy of solvation -34.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds