Wall clock time and date at job start Tue Mar 31 2020 05:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 N 1.46497 * 109.47475 * 180.02562 * 16 14 13 18 18 C 1.35311 * 125.86958 * 124.99891 * 17 16 14 19 19 C 1.35351 * 106.17407 * 180.02562 * 18 17 16 20 20 C 1.50699 * 126.75113 * 180.02562 * 19 18 17 21 21 H 1.09004 * 109.47111 * 4.99678 * 20 19 18 22 22 C 1.53002 * 109.47337 * 125.00016 * 20 19 18 23 23 O 1.42896 * 109.47172 * 244.99987 * 20 19 18 24 24 N 1.33767 * 106.49818 * 0.02562 * 19 18 17 25 25 N 1.28637 * 108.88617 * 359.73231 * 24 19 18 26 26 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 27 27 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 29 29 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 30 30 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 31 31 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 32 32 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 33 33 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 34 34 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 35 35 H 1.07999 * 126.91306 * 0.02927 * 18 17 16 36 36 H 1.08995 * 109.47013 * 59.99898 * 22 20 19 37 37 H 1.09004 * 109.46884 * 180.02562 * 22 20 19 38 38 H 1.09001 * 109.47089 * 299.99875 * 22 20 19 39 39 H 0.96699 * 114.00441 * 179.97438 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 7 -1.2994 3.8616 2.5657 18 6 -2.3304 3.5870 3.3978 19 6 -3.3909 4.2840 2.9270 20 6 -4.7808 4.3132 3.5087 21 1 -4.7970 3.7468 4.4398 22 6 -5.1873 5.7620 3.7859 23 8 -5.6979 3.7305 2.5807 24 7 -2.9625 4.9418 1.8439 25 7 -1.7178 4.6746 1.6596 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 5.9548 0.8552 -0.5318 32 1 2.2902 2.1166 1.9978 33 1 0.0991 2.6017 3.4901 34 1 0.7539 4.1436 2.8885 35 1 -2.3111 2.9415 4.2635 36 1 -5.1711 6.3284 2.8548 37 1 -6.1925 5.7830 4.2071 38 1 -4.4878 6.2065 4.4939 39 1 -6.6140 3.7153 2.8898 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273837511.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:56 Heat of formation + Delta-G solvation = 11.972206 kcal Electronic energy + Delta-G solvation = -22287.872839 eV Core-core repulsion = 18847.184440 eV Total energy + Delta-G solvation = -3440.688399 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.25223 -39.42414 -37.58323 -35.57796 -34.33920 -32.60169 -32.16624 -31.63295 -29.78884 -28.64646 -26.97700 -24.30609 -22.73027 -22.23618 -21.43306 -20.34272 -19.71797 -18.10861 -17.43972 -17.30215 -16.91747 -15.79417 -15.54187 -15.39174 -15.10274 -14.61628 -14.25111 -13.89796 -13.31109 -13.19121 -12.89207 -12.67378 -12.50631 -12.36377 -12.20191 -11.87674 -11.71919 -11.23613 -11.00206 -10.90545 -10.79028 -10.51546 -10.37406 -10.19625 -9.95580 -9.67567 -9.34975 -9.25683 -9.12043 -8.41636 -8.27466 -6.65188 -4.30384 1.55868 2.20474 2.50787 2.88485 3.35002 3.43085 3.54428 3.63629 4.03412 4.29749 4.36417 4.51485 4.65356 4.77242 4.81259 4.82631 4.99492 5.09941 5.23618 5.44174 5.50802 5.76310 5.96855 5.97246 6.00911 6.10611 6.17486 6.47569 6.58090 6.70949 6.83052 6.93108 7.21001 7.27327 7.45067 7.51398 8.13998 8.24180 8.55668 8.60435 8.76766 9.38848 10.75757 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.035060 B = 0.003651 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.438127 B = 7666.585796 C = 7875.350353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.249 3.751 4 H 0.044 0.956 5 C -0.619 4.619 6 H 0.062 0.938 7 C 0.041 3.959 8 N -0.896 5.896 9 Si 1.038 2.962 10 H -0.282 1.282 11 H -0.269 1.269 12 H -0.279 1.279 13 N -0.694 5.694 14 C 0.488 3.512 15 O -0.517 6.517 16 C 0.091 3.909 17 N -0.274 5.274 18 C -0.041 4.041 19 C -0.025 4.025 20 C 0.194 3.806 21 H 0.070 0.930 22 C -0.179 4.179 23 O -0.557 6.557 24 N -0.254 5.254 25 N -0.046 5.046 26 H 0.051 0.949 27 H 0.032 0.968 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.269 0.731 32 H 0.394 0.606 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.190 0.810 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.780 4.491 15.616 22.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C 0.146 3.854 4 H 0.062 0.938 5 C -0.657 4.657 6 H 0.080 0.920 7 C -0.166 4.166 8 N -0.529 5.529 9 Si 0.866 3.134 10 H -0.208 1.208 11 H -0.195 1.195 12 H -0.205 1.205 13 N -0.343 5.343 14 C 0.270 3.730 15 O -0.392 6.392 16 C -0.035 4.035 17 N -0.067 5.067 18 C -0.192 4.192 19 C -0.162 4.162 20 C 0.134 3.866 21 H 0.088 0.912 22 C -0.237 4.237 23 O -0.362 6.362 24 N -0.122 5.122 25 N -0.026 5.026 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.228 0.772 33 H 0.148 0.852 34 H 0.144 0.856 35 H 0.207 0.793 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -15.285 4.659 11.729 19.822 hybrid contribution -0.188 -0.129 3.449 3.457 sum -15.473 4.530 15.178 22.143 Atomic orbital electron populations 1.21876 0.97379 0.98981 1.01793 1.22374 0.93691 0.99681 1.02044 1.19114 0.95971 0.88528 0.81767 0.93849 1.22059 0.89460 1.49890 1.04263 0.91956 1.25668 0.97512 0.92258 1.01160 1.70881 1.07040 1.40648 1.34300 0.84136 0.75488 0.77879 0.75930 1.20806 1.19512 1.20467 1.46171 1.13778 1.55797 1.18593 1.20037 0.83879 0.80532 0.88592 1.90813 1.50446 1.58101 1.39865 1.22038 0.79611 1.01314 1.00498 1.46803 1.10421 1.30889 1.18573 1.23240 0.88090 1.06413 1.01408 1.21435 0.96112 1.01543 0.97157 1.19655 0.83420 0.93615 0.89957 0.91216 1.22437 1.01276 0.96720 1.03272 1.86666 1.20549 1.83251 1.45756 1.75086 1.02068 1.20757 1.14259 1.78510 1.06529 1.07193 1.10377 0.92945 0.94929 0.93744 0.91069 0.92988 0.92059 0.77243 0.85194 0.85591 0.79341 0.90794 0.91979 0.91630 0.77413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.53 37.15 0.32 -2.54 16 2 C -0.14 -3.00 5.28 -26.73 -0.14 -3.14 16 3 C 0.25 5.69 1.82 -69.08 -0.13 5.56 16 4 H 0.04 1.11 6.26 -51.93 -0.32 0.79 16 5 C -0.62 -16.09 9.01 -34.44 -0.31 -16.40 16 6 H 0.06 1.67 7.96 -52.48 -0.42 1.26 16 7 C 0.04 1.13 5.32 -17.82 -0.09 1.03 16 8 N -0.90 -26.16 13.69 55.43 0.76 -25.40 16 9 Si 1.04 24.91 26.27 -169.99 -4.47 20.45 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.04 5.67 56.52 0.32 -5.72 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.69 -12.58 5.03 -54.94 -0.28 -12.85 16 14 C 0.49 8.46 6.44 -10.99 -0.07 8.39 16 15 O -0.52 -11.37 12.82 5.56 0.07 -11.30 16 16 C 0.09 1.05 6.94 -5.20 -0.04 1.02 16 17 N -0.27 -3.95 3.19 -62.44 -0.20 -4.15 16 18 C -0.04 -0.48 11.49 -17.05 -0.20 -0.68 16 19 C -0.02 -0.34 6.13 -82.78 -0.51 -0.85 16 20 C 0.19 1.92 4.08 -27.88 -0.11 1.80 16 21 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 22 C -0.18 -1.48 9.51 37.16 0.35 -1.13 16 23 O -0.56 -6.22 13.30 -35.23 -0.47 -6.69 16 24 N -0.25 -4.53 12.40 33.29 0.41 -4.11 16 25 N -0.05 -0.85 12.14 60.35 0.73 -0.11 16 26 H 0.05 1.13 7.88 -51.93 -0.41 0.72 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.86 5.63 -51.92 -0.29 0.57 16 29 H 0.07 1.63 4.74 -51.92 -0.25 1.38 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.27 7.74 8.73 -40.82 -0.36 7.38 16 32 H 0.39 5.95 8.53 -40.82 -0.35 5.61 16 33 H 0.13 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.13 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.19 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.38 2.08 9.08 45.56 0.41 2.50 16 LS Contribution 325.18 15.07 4.90 4.90 Total: -1.00 -36.92 325.18 -4.12 -41.04 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -4.66 Total: 5.16 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -0.93 Total: -6.92 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 1.43 Total: -46.63 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.40 Total: -17.99 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -4.47 Total: 20.45 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.92 -4.12 -41.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273837511.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.013 kcal (2) G-P(sol) polarization free energy of solvation -36.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds